willfurnass

#!/usr/bin/env python

# A test of whether Ruffus can be used to submit jobs to a cluster using the
# DRMAA API, sharing the DRMAA session between threads to allow multiple jobs to
# be submitted at once without burdening the head node with multiple DRMAA
# sessions.

# Can run this from a conda environnment created using
# conda create -n drmaatest -c bioconda python=2.7 ruffus drmaa

willfurnass

#!/usr/bin/env python
from __future__ import print_function
from ruffus import transform, suffix, pipeline_run

# A test of using Ruffus to locally run a very simple pipeline comprised of
# tasks defined as Python functions

# Can run this from a conda environnment created using
# conda create -n drmaatest -c bioconda python=2.7 ruffus drmaa

willfurnass

--- BibTeX.js.orig	2015-07-03 07:18:37.000000000 +0100
+++ BibTeX.js	2015-08-09 14:21:08.779706944 +0100
@@ -1176,7 +1176,11 @@
 		if(!type) type = "misc";
 		
 		// create a unique citation key
-		var citekey = buildCiteKey(item, citekeys);
+		if (item.shortTitle==''){
+		    var citekey = buildCiteKey(item, citekeys);
+		} else {

willfurnass

function tau_a = shear_stress(D, Q, k_s, T, den)
    %{ Hydraulic shear stress at pipe wall (in Pa).
    %
    % Params:
    % D -- internal diameter (m)
    % Q -- flow (m^3s^-1)
    % k_s -- roughness height (m)
    % T -- temperature; defaults to 10degC)
    % den -- density defaults to 1000kg/m^3
    %