master shell script to run multiple RNA-seq samples simultaneously, each on a separate node

compbio_hw2_rnaseq_master.sh

#!/bin/bash

LOGFILE="master_job_ids.log"

echo "======Starting new analysis run========" >> $LOGFILE
names=( SRR1592185 SRR1592187 SRR1592189 SRR1592186 SRR1592188 SRR1592190 )
for ((i=0; i<${#names[@]} ; i++)) do
	echo "Running Batch Job for ${names[i]}. SLURM Job ID shown below:" >> $LOGFILE
	#make results directory
	mkdir -p ${names[i]}_results
	cd ${names[i]}_results
	sbatch -J ${names[i]} ../rnaseq_cmd.sh ${names[i]} >> ../${LOGFILE}
	cd ..
done