Created
April 17, 2015 16:28
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Testing rejection thresholds in t and binomial distribution for binary data
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library(dplyr) | |
library(reshape2) | |
library(ggplot2) | |
n <- 500 | |
null <- .75 | |
obs_n <- seq(1,n-1) | |
binom_probs_low <- pbinom(obs_n, n, null) | |
binom_probs_upp <- pbinom(obs_n, n, null,lower.tail = FALSE) | |
binom_probs <- pmin(binom_probs_low, binom_probs_upp) | |
t_probs <- rep(0,n-2) | |
for (i in 1:(n-1)) { | |
x = c(rep(1,i),rep(0,n-i)) | |
t_probs[i] <- t.test(x,mu=.75)$p.value | |
} | |
df <- data.frame(Sample = obs_n, reject = NA, Binomial = binom_probs, t = t_probs) | |
df <- melt(df,id.vars = c("Sample","reject"),var = "Distribution") | |
df$reject[df$Distribution =='Binomial'] <- ifelse(df$value[df$Distribution =='Binomial'] < .025 |df$value[df$Distribution =='Binomial'] > .975 , 1,0) | |
df$reject[df$Distribution =='t'] <- ifelse(df$value[df$Distribution =='t'] < .025, 1,0) | |
df <- df %>% group_by(Sample) %>% | |
mutate(decision = if (all(reject==1)) { 1} else if (all(reject==0) ) { 0 } else { 2 }) | |
df$decision <- factor(df$decision) | |
ggplot(data = df, aes(x=Sample, y = value, color = decision,shape=Distribution)) + | |
geom_point() + | |
coord_cartesian(xlim = c(.6*n, .9*n)) + | |
ggtitle("Binomial vs. t NHST Results") | |
# decision = if (all(reject==1)) { 1} else if (all(reject==0) ) { 0} else { 2} |
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