vignette-warnings.txt

Building cellmigRation vignettes
--- re-building ‘cellmigRation.Rmd’ using rmarkdown
Bioconductor
  version
  3.12
  (BiocManager
  1.30.10), R
  4.0.4
  (2021-02-15)
Installing
  package(s)
  'cellmigRation'
Warning: package 'cellmigRation' is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Warning in sink() : no sink to remove
Computing centroid positions.......
Total number of unique cells across images: 4; Cells retained after filtering: 4
Total number of unique cells across images: 6; Cells retained after filtering: 4
Total number of unique cells across images: 4; Cells retained after filtering: 4
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Warning in pt(abs(tval), rdf, lower.tail = FALSE) : NaNs produced
Results were saved in your directory [use getwd()]

Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in predict.lm(quadratic.m, list(Time = timevalues, Time2 = timevalues^2)) :
  prediction from a rank-deficient fit may be misleading
Warning in sqrt(npair - 2) : NaNs produced

These are the parameters in your final results:
--- finished re-building ‘cellmigRation.Rmd’

✔ Setting active project to '<no active project>'
✔ Setting active project to '<no active project>'
Moving cellmigRation.html, cellmigRation.R to doc/
Copying cellmigRation.Rmd to doc/
✔ Setting active project to '<no active project>'
✔ Setting active project to '<no active project>'
Building vignette index