Built with blockbuilder.org
forked from scresawn's block: simple genome map
Created
February 21, 2017 16:47
-
-
Save wrigh3tl/9ea7865446a191547879c7d14837c547 to your computer and use it in GitHub Desktop.
simple genome map
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| license: mit |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [{ | |
| "name": "Gene 1", | |
| "start": 50, | |
| "stop": 350, | |
| "orientation": "forward" | |
| }, | |
| { | |
| "name": "Gene 2", | |
| "start": 365, | |
| "stop": 425, | |
| "orientation": "reverse" | |
| }, | |
| { | |
| "name": "Gene 3", | |
| "start": 450, | |
| "stop": 580, | |
| "orientation": "reverse" | |
| }, | |
| { | |
| "name": "Gene 4", | |
| "start": 600, | |
| "stop": 770, | |
| "orientation": "reverse" | |
| }] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!DOCTYPE html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <script src="https://d3js.org/d3.v4.min.js"></script> | |
| <style> | |
| body { margin:0;position:fixed;top:0;right:0;bottom:0;left:0; } | |
| </style> | |
| </head> | |
| <body> | |
| <script> | |
| // Feel free to change or delete any of the code you see in this editor! | |
| var svg = d3.select("body").append("svg") | |
| .attr("width", 960) | |
| .attr("height", 500) | |
| d3.json("data.json", function(err, mydata) { | |
| var g = d3.select("svg").selectAll("g") | |
| .data(mydata) | |
| .enter() | |
| .append("g") | |
| .attr("transform", function (d) { | |
| if (d.orientation === 'forward') { | |
| return "translate(" + d.start + ",100)"; | |
| } | |
| else { | |
| return "translate(" + d.start + ",125)"; | |
| } | |
| }); | |
| g.append("rect") | |
| .attr("height", 50) | |
| .attr("width", function (d) { | |
| return d.stop - d.start; | |
| }) | |
| .attr("fill", function(d) { | |
| if (d.orientation == "forward") { | |
| return "green"; | |
| } | |
| else if (d.orientation == "reverse") { | |
| return "red"; | |
| } | |
| }) | |
| .attr("stroke-width", 3) | |
| .attr("stroke", "#000000"); | |
| g.append("text") | |
| .attr("x", function (d) { return (d.stop-d.start)/2}) | |
| .attr("y", 25) | |
| .text(function (d) { return d.name; }) | |
| .attr("text-anchor", "middle") | |
| .attr("alignment-baseline", "central"); | |
| }); | |
| </script> | |
| </body> |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment