generated_nodes.ttl

@base <http://www.rqtl.org/dc/dataset/maf_example/> .
@prefix ns:    <http://www.rqtl.org/dc/dataset/maf_example/> .
@prefix qb:    <http://purl.org/linked-data/cube#> .
@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prop:  <http://www.rqtl.org/dc/properties/> .
@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/>.

ns:obs4 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <node/4/8> ;
  prop:Entrez_Gene_Id <node/4/9> ;
  prop:Center <node/4/10> ;
  prop:NCBI_Build 37 ;
  prop:Chromosome <node/4/12> ;
  <http://biohackathon.org/resource/faldo#begin> <node/4/13> ;
  <http://biohackathon.org/resource/faldo#end> <node/4/14> ;
  prop:Strand <node/4/15> ;
  prop:Reference_Allele <node/4/16> ;
  prop:Tumor_Seq_Allele1 <node/4/17> ;
  prop:Tumor_Seq_Allele2 <node/4/18> ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-BH-A0HP-01A-12D-A099-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-BH-A0HP-10A-01D-A099-09" ;
  prop:Match_Norm_Seq_Allele1 <node/4/22> ;
  prop:Match_Norm_Seq_Allele2 <node/4/23> ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2" ;
  prop:Matched_Norm_Sample_UUID "8c059d33-23de-439a-914a-290527c5efbe" ;
  prop:patient_id "BH-A0HP" ;
  prop:sample_id "01A-12D-A099-09" ;
  .

<node/4/8>
  a <http://identifiers.org/hgnc.symbol>  ;
  <http://semanticscience.org/resource/SIO_000300> <http://identifiers.org/hgnc.symbol/A1CF>  .

<node/4/9>
  a <http://identifiers.org/ncbigene>  ;
  <http://semanticscience.org/resource/SIO_000300> 29974  .

<node/4/10>
  a foaf:Organization  ;
  foaf:homepage "genome.wustl.edu"  .

<node/4/12>
  a <http://purl.org/obo/owl/SO#SO_0000340>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/12/1> . 
    
<node/4/12/1>
  <http://semanticscience.org/resource/SIO_000300> 10 .

<node/4/13>
  a <http://biohackathon.org/resource/faldo#Position>  ;
  <http://semanticscience.org/resource/SIO_000300> 52595854  .


<node/4/14>
  a <http://biohackathon.org/resource/faldo#Position>  ;
  <http://semanticscience.org/resource/SIO_000300> 52595854  .


<node/4/15>
  a <http://edamontology.org/data_0853>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/15/1> . 
    
<node/4/15/1>
  <http://semanticscience.org/resource/SIO_000300> "+" .

<node/4/16>
  a <http://purl.org/obo/owl/SO#SO_0001023>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/16/1> . 
    
<node/4/16/1>
  <http://semanticscience.org/resource/SIO_000300> "G" .

<node/4/17>
  a <http://purl.org/obo/owl/SO#SO_0001023>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/17/1> . 
    
<node/4/17/1>
  <http://semanticscience.org/resource/SIO_000300> "G" .

<node/4/18>
  a <http://purl.org/obo/owl/SO#SO_0001023>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/18/1> . 
    
<node/4/18/1>
  <http://semanticscience.org/resource/SIO_000300> "A" .

<node/4/22>
  a <http://purl.org/obo/owl/SO#SO_0001023>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/22/1> . 
    
<node/4/22/1>
  <http://semanticscience.org/resource/SIO_000300> "G" .

<node/4/23>
  a <http://purl.org/obo/owl/SO#SO_0001023>  ;
  <http://semanticscience.org/resource/SIO_000008> <node/4/23/1> . 
    
<node/4/23/1>
  <http://semanticscience.org/resource/SIO_000300> "G" .