Ubiquity command for OrthoMCL Gene and Group

orthomcl.js

CmdUtils.CreateCommand({
  names: ["orthomcl"],
  arguments: [{label: "gene_or_group_accession", nountype: noun_arb_text, role: 'object'}],
  homepage: "http://gist.github.com/30649",
  author: { name: "Ben J. Woodcroft", email: "b.woodcroft@pgrad.unimelb.edu.au"},
  contributors: ["Ben J. Woodcroft"],
  license: "GPL3",
  help: "Go to an OrthoMCL gene or group page in a new window",
  description: "Go to an OrthoMCL gene or group page in a new window",
  preview: "Go to an OrthoMCL gene or group page in a new window",
  
  execute: function execute(args) {
    var urlString = "";
    var text = new String(args.object.text);

    urlString = "http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=groupList&type=ackeyword&q="+
      text +
      "&in=Group+or+Seq+Accession%28s%29";

    Utils.openUrlInBrowser(urlString);
  }
})


CmdUtils.CreateCommand({
  names: ["orthomcl beta"],
  arguments: [{label: "gene_or_group_accession", nountype: noun_arb_text, role: 'object'}],
  homepage: "http://gist.github.com/30649",
  author: { name: "Ben J. Woodcroft", email: "b.woodcroft@pgrad.unimelb.edu.au"},
  contributors: ["Ben J. Woodcroft"],
  license: "GPL3",
  help: "Go to an OrthoMCL gene or group page in a new window",
  description: "Go to an OrthoMCL gene or group page in a new window",
  preview: "Go to an OrthoMCL gene or group page in a new window",
  
  execute: function execute(args) {
    var urlString = "";
    var text = new String(args.object.text);

    urlString = "http://www.orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=sequenceList&type=ackeyword&q="+
      text+
      "&in=Accession";

    Utils.openUrlInBrowser(urlString);
  }
})