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December 19, 2019 19:03
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scRNA-seq conda yaml file
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| name: /depot/bioinf/Projects/Bowman/scRNA_seq_MeHg/software/env4scRNA | |
| channels: | |
| - r | |
| - biobakery | |
| - conda-forge | |
| - bioconda | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1 | |
| - _r-mutex=1.0.1 | |
| - binutils_impl_linux-64=2.33.1 | |
| - binutils_linux-64=2.33.1 | |
| - bwidget=1.9.13 | |
| - bzip2=1.0.8 | |
| - ca-certificates=2019.11.28 | |
| - cairo=1.14.12 | |
| - certifi=2019.11.28 | |
| - colormath=3.0.0 | |
| - curl=7.65.3 | |
| - cyrus-sasl=2.1.26 | |
| - dbus=1.13.12 | |
| - decorator=4.4.1 | |
| - expat=2.2.6 | |
| - font-ttf-dejavu-sans-mono=2.37 | |
| - font-ttf-inconsolata=2.001 | |
| - font-ttf-source-code-pro=2.030 | |
| - font-ttf-ubuntu=0.83 | |
| - fontconfig=2.13.0 | |
| - fonts-anaconda=1 | |
| - freetype=2.10.0 | |
| - fribidi=1.0.5 | |
| - gcc_impl_linux-64=7.3.0 | |
| - gcc_linux-64=7.3.0 | |
| - gettext=0.19.8.1 | |
| - gfortran_impl_linux-64=7.3.0 | |
| - gfortran_linux-64=7.3.0 | |
| - glib=2.56.2 | |
| - gmp=6.1.2 | |
| - graphite2=1.3.13 | |
| - gsl=2.5 | |
| - gst-plugins-base=1.14.0 | |
| - gstreamer=1.14.0 | |
| - gxx_impl_linux-64=7.3.0 | |
| - gxx_linux-64=7.3.0 | |
| - harfbuzz=1.8.8 | |
| - icu=58.2 | |
| - jpeg=9c | |
| - krb5=1.16.3 | |
| - ld_impl_linux-64=2.33.1 | |
| - libblas=3.8.0 | |
| - libcblas=3.8.0 | |
| - libcurl=7.65.3 | |
| - libdb=6.1.26 | |
| - libedit=3.1.20181209 | |
| - libffi=3.2.1 | |
| - libgcc-ng=9.2.0 | |
| - libgfortran-ng=7.3.0 | |
| - libiconv=1.15 | |
| - liblapack=3.8.0 | |
| - libntlm=1.5 | |
| - libopenblas=0.3.7 | |
| - libpng=1.6.37 | |
| - libssh2=1.8.2 | |
| - libstdcxx-ng=9.2.0 | |
| - libtiff=4.1.0 | |
| - libuuid=1.0.3 | |
| - libxcb=1.13 | |
| - libxml2=2.9.9 | |
| - lz4-c=1.8.3 | |
| - make=4.2.1 | |
| - ncurses=6.1 | |
| - networkx=2.4 | |
| - numpy=1.17.3 | |
| - openjdk=8.0.152 | |
| - openssl=1.1.1d | |
| - pandoc=2.2.3.2 | |
| - pango=1.42.4 | |
| - pcre=8.43 | |
| - pip=19.3.1 | |
| - pixman=0.38.0 | |
| - pthread-stubs=0.4 | |
| - python=3.8.0 | |
| - qt=5.6.3 | |
| - r-ape=5.3 | |
| - r-askpass=1.1 | |
| - r-assertthat=0.2.1 | |
| - r-backports=1.1.5 | |
| - r-base=3.6.0 | |
| - r-base64enc=0.1_3 | |
| - r-bh=1.69.0_1 | |
| - r-bibtex=0.4.2 | |
| - r-bit=1.1_14 | |
| - r-bit64=0.9_7 | |
| - r-bitops=1.0_6 | |
| - r-blob=1.1.1 | |
| - r-catools=1.17.1.3 | |
| - r-cellranger=1.1.0 | |
| - r-cli=1.1.0 | |
| - r-clipr=0.6.0 | |
| - r-cluster=2.1.0 | |
| - r-codetools=0.2_16 | |
| - r-colorspace=1.4_1 | |
| - r-config=0.3 | |
| - r-cowplot=1.0.0 | |
| - r-crayon=1.3.4 | |
| - r-crosstalk=1.0.0 | |
| - r-curl=4.3 | |
| - r-data.table=1.12.6 | |
| - r-dbi=1.0.0 | |
| - r-dbplyr=1.4.0 | |
| - r-digest=0.6.23 | |
| - r-dplyr=0.8.3 | |
| - r-dqrng=0.2.1 | |
| - r-ellipsis=0.3.0 | |
| - r-evaluate=0.13 | |
| - r-fansi=0.4.0 | |
| - r-farver=2.0.1 | |
| - r-fastmap=1.0.1 | |
| - r-fitdistrplus=1.0_14 | |
| - r-fnn=1.1.3 | |
| - r-forcats=0.4.0 | |
| - r-forge=0.2.0 | |
| - r-future=1.15.1 | |
| - r-future.apply=1.3.0 | |
| - r-gbrd=0.4_11 | |
| - r-gdata=2.18.0 | |
| - r-generics=0.0.2 | |
| - r-ggplot2=3.2.1 | |
| - r-ggrepel=0.8.1 | |
| - r-ggridges=0.5.1 | |
| - r-globals=0.12.4 | |
| - r-glue=1.3.1 | |
| - r-gplots=3.0.1.1 | |
| - r-gridextra=2.3 | |
| - r-gtable=0.3.0 | |
| - r-gtools=3.8.1 | |
| - r-haven=2.1.0 | |
| - r-hexbin=1.28.0 | |
| - r-highr=0.8 | |
| - r-hms=0.4.2 | |
| - r-htmltools=0.4.0 | |
| - r-htmlwidgets=1.5.1 | |
| - r-httpuv=1.5.2 | |
| - r-httr=1.4.1 | |
| - r-ica=1.0_2 | |
| - r-igraph=1.2.4.2 | |
| - r-irlba=2.3.3 | |
| - r-jsonlite=1.6 | |
| - r-kernsmooth=2.23_15 | |
| - r-knitr=1.22 | |
| - r-labeling=0.3 | |
| - r-later=1.0.0 | |
| - r-lattice=0.20_38 | |
| - r-lazyeval=0.2.2 | |
| - r-leiden=0.3.1 | |
| - r-lifecycle=0.1.0 | |
| - r-listenv=0.7.0 | |
| - r-lmtest=0.9_37 | |
| - r-lsei=1.2_0 | |
| - r-magrittr=1.5 | |
| - r-markdown=0.9 | |
| - r-mass=7.3_51.4 | |
| - r-matrix=1.2_17 | |
| - r-metap=1.1 | |
| - r-mgcv=1.8_29 | |
| - r-mime=0.7 | |
| - r-miniui=0.1.1.1 | |
| - r-mongolite=2.0.1 | |
| - r-munsell=0.5.0 | |
| - r-nlme=3.1_141 | |
| - r-npsurv=0.4_0 | |
| - r-odbc=1.1.5 | |
| - r-openssl=1.4.1 | |
| - r-openxlsx=4.1.0 | |
| - r-packrat=0.5.0 | |
| - r-pbapply=1.4_2 | |
| - r-pillar=1.4.2 | |
| - r-pkgconfig=2.0.3 | |
| - r-pki=0.1_5.1 | |
| - r-plogr=0.2.0 | |
| - r-plotly=4.9.1 | |
| - r-plyr=1.8.4 | |
| - r-png=0.1_7 | |
| - r-prettyunits=1.0.2 | |
| - r-profvis=0.3.5 | |
| - r-progress=1.2.0 | |
| - r-promises=1.1.0 | |
| - r-purrr=0.3.3 | |
| - r-r.methodss3=1.7.1 | |
| - r-r.oo=1.23.0 | |
| - r-r.utils=2.9.0 | |
| - r-r2d3=0.2.3 | |
| - r-r6=2.4.1 | |
| - r-rann=2.6.1 | |
| - r-rappdirs=0.3.1 | |
| - r-rcolorbrewer=1.1_2 | |
| - r-rcpp=1.0.3 | |
| - r-rcppannoy=0.0.14 | |
| - r-rcppeigen=0.3.3.7.0 | |
| - r-rcppparallel=4.4.4 | |
| - r-rcppprogress=0.4.1 | |
| - r-rcurl=1.95_4.12 | |
| - r-rdpack=0.11_0 | |
| - r-readr=1.3.1 | |
| - r-readxl=1.3.1 | |
| - r-rematch=1.0.1 | |
| - r-reshape2=1.4.3 | |
| - r-reticulate=1.13 | |
| - r-rjava=0.9_11 | |
| - r-rjdbc=0.2_7.1 | |
| - r-rjsonio=1.3_1.1 | |
| - r-rlang=0.4.2 | |
| - r-rmarkdown=1.12 | |
| - r-rocr=1.0_7 | |
| - r-rprojroot=1.3_2 | |
| - r-rsconnect=0.8.13 | |
| - r-rspectra=0.15_0 | |
| - r-rstudioapi=0.10 | |
| - r-rsvd=1.0.2 | |
| - r-rtsne=0.15 | |
| - r-scales=1.1.0 | |
| - r-sctransform=0.2.0 | |
| - r-sdmtools=1.1_221.2 | |
| - r-seurat=3.1.1 | |
| - r-shiny=1.4.0 | |
| - r-sitmo=2.0.1 | |
| - r-sourcetools=0.1.7 | |
| - r-sparklyr=1.0.0 | |
| - r-stringi=1.4.3 | |
| - r-stringr=1.4.0 | |
| - r-survival=2.44_1.1 | |
| - r-sys=3.3 | |
| - r-tibble=2.1.3 | |
| - r-tidyr=1.0.0 | |
| - r-tidyselect=0.2.5 | |
| - r-tinytex=0.12 | |
| - r-tsne=0.1_3 | |
| - r-utf8=1.1.4 | |
| - r-uwot=0.1.4 | |
| - r-vctrs=0.2.0 | |
| - r-viridislite=0.3.0 | |
| - r-withr=2.1.2 | |
| - r-xfun=0.6 | |
| - r-xml2=1.2.0 | |
| - r-xtable=1.8_4 | |
| - r-yaml=2.2.0 | |
| - r-zeallot=0.1.0 | |
| - r-zip=2.0.1 | |
| - r-zoo=1.8_6 | |
| - readline=7.0 | |
| - rstudio=1.1.456 | |
| - sed=4.7 | |
| - setuptools=42.0.2 | |
| - spectra=0.0.11 | |
| - sqlite=3.30.1 | |
| - tk=8.6.10 | |
| - tktable=2.10 | |
| - unixodbc=2.3.7 | |
| - wheel=0.33.6 | |
| - xorg-kbproto=1.0.7 | |
| - xorg-libice=1.0.10 | |
| - xorg-libx11=1.6.9 | |
| - xorg-libxau=1.0.9 | |
| - xorg-libxdmcp=1.1.3 | |
| - xorg-libxext=1.3.4 | |
| - xorg-libxrender=0.9.10 | |
| - xorg-renderproto=0.11.1 | |
| - xorg-xextproto=7.3.0 | |
| - xorg-xproto=7.0.31 | |
| - xz=5.2.4 | |
| - zlib=1.2.11 | |
| - zstd=1.4.4 |
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