Vladimír Ulman xulman
xulman
/ gist:31e8d251e0c4f4334968faf63c8507cf
Last active
March 4, 2024 14:39
testing new folder-DnD in ImageJ2/Fiji
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| ================================================================================================ | |
| variant for | |
| a) near future (when image-legacy master makes it into scijava/parent-pom) | |
| b) for apps that harvest an image their own way (here somehow from a given folder) | |
| ================================================================================================ | |
| git clone git@github.com:xulman/imagej-legacy.git | |
| cd imagej-legacy | |
| mvn -Dmaven.test.skip=true clean install | |
| cd .. |
xulman
/ BdvIoPlugin.java
Created
February 6, 2022 12:31
drag&drop handler of BDV's xml (should be part of BDV-core distro)
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| package cz.ulman.dnd; | |
| import org.scijava.Priority; | |
| import org.scijava.io.IOService; | |
| import org.scijava.io.location.FileLocation; | |
| import org.scijava.io.location.Location; | |
| import org.scijava.plugin.Plugin; | |
| import org.scijava.io.IOPlugin; | |
| import org.scijava.io.AbstractIOPlugin; |
xulman
/ MastodonIoPlugin.java
Created
February 5, 2022 19:53
starting Mastodon with Drag&Drop onto Fiji window
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| package cz.ulman.dnd; | |
| import org.scijava.plugin.Plugin; | |
| import org.scijava.io.IOPlugin; | |
| import org.scijava.io.AbstractIOPlugin; | |
| import org.scijava.io.location.FileLocation; | |
| import org.scijava.io.location.Location; | |
| import java.io.IOException; | |
| import java.util.ArrayList; |
xulman
/ gist:23f08764fe76cc6b95d70bce36fc3788
Created
March 24, 2021 16:08
C++ example code how to submit http comm using the Poco project
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| $ more *.* | |
| :::::::::::::: | |
| CMakeLists.txt | |
| :::::::::::::: | |
| cmake_minimum_required (VERSION 3.5) | |
| project (poco-VladoClientTest) | |
| find_package (Poco REQUIRED Net) | |
| add_executable (clientTest main.cpp) |
xulman
/ gist:07fbaa26108cc5fa90568f805005513e
Last active
March 7, 2021 17:34
How to compile EmbryoGen on IT4I's supercomputers
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| # plan: | |
| # ----- | |
| # 1) get EmbryoGen source code | |
| # 2) set up the environment | |
| # a) with: module add git, then GCC/10.2.0, CMake, OpenMPI/4.0.5-GCC-10.2.0 | |
| # b) calling a script from EmbryoGen's repo | |
| # 3) download, compile and install locally all necessary libs | |
| # 4) setup & compile EmbryoGen | |
xulman
/ gist:b47b789daef93f7431e0db55dec3b450
Created
February 25, 2021 08:51
How to compile CBIA's viewer4d on a Linux system
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| The official web page : https://cbia.fi.muni.cz/software/viewer4d/main.html | |
| with the offical howto: https://cbia.fi.muni.cz/software/viewer4d/main-compiling.html | |
| (with official DL-page: https://cbia.fi.muni.cz/software/viewer4d/main-download.html) | |
| install into your OS the following packages: | |
| i3dlibs, glew-devel, wxWidgets-devel, gcc, cmake | |
| i3dlibs : https://cbia.fi.muni.cz/software/i3d-library.html | |
| glew-devel: reported working with version 2.1 |
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| # create 20 runX folders | |
| for i in `seq 1 20`; do mkdir -p run${i}; done | |
| # submit 20 jobs, each in its own folder | |
| for i in `seq 1 20`; do | |
| cd run${i} | |
| . /some/path/to/qsub/script mitogen params..... | |
| cd .. | |
| done |
xulman
/ gist:deece254470b8375f5813f099118e6fb
Created
February 2, 2021 08:48
how to compile and run MitoGen on IT4I cluster
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| # once on a cluster, say after `ssh salomon` | |
| # --------------- prepare and compile --------------- | |
| # add necessary dev modules | |
| . /scratch/work/project/open-19-3/simulators_libs/addModulesAtIT4I | |
| # get sources and prepare env | |
| git clone ...daPath... | |
| cd $clonedFolder | |
| mkdir BUILD |