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pkg_system_requirements.tsv
ABC.RAP GNU make
abn Gnu Scientific Library version >= 1.12
adimpro Image Magick (for reading non PPM format), dcraw(for reading RAW images).
ADMMsigma GNU make
AhoCorasickTrie C++11
alakazam C++11
alfr Alfresco Content Repository (Community orEnterprise)
altair Python (>= 3.5.0), (Python) Altair (>= 3.1.0)
ambient C++11
AncestryMapper None, but greater than 12 GB of RAM highlyrecommended.
animation ImageMagick (http://imagemagick.org) orGraphicsMagick (http://www.graphicsmagick.org) or LyX(http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex();SWF Tools (http://swftools.org) for saveSWF(); FFmpeg(http://ffmpeg.org) or avconv (https://libav.org/avconv.html)for saveVideo()
ANN2 C++11
apcf C++11, GDAL (>= 2.0.0), GEOS (>= 3.4.0)
aphid GNU make
apmsWAPP SAINT_v2.3.4
argparse python (>= 3.2)
ari ffmpeg (>= 3.2.4)
arrangements gmp (>= 4.2.3)
arrApply C++11
arrow C++11
ARTP2 C++11
arulesNBMiner Java (>= 5.0)
asbio BWidget
asremlPlus asreml-R 2.x
autothresholdr C++11
av FFmpeg >= 3.2 with at least libx264 and lame (mp3)drivers. On Debian / Ubuntu use libavfilter-dev and on Fedorause ffmpeg-devel.
babelwhale Docker and/or Singularity (>=3.0)
bacistool JAGS (>= 4.3.0)
baggr GNU make
BALD JAGS (>= 4.3.0), GNU make
bamdit JAGS (>= 3.4.0) (seehttp://mcmc-jags.sourceforge.net)
BANOVA JAGS-4.3.0, C++11
bartMachine Java (>= 7.0)
bartMachineJARs Java (>= 7.0)
baseflow cargo (>= 1.36.0), rustc, GNU make
bayes4psy GNU make
bayesCL OpenCL library; single-precision AMD or Nvidia GPU;
bayescount JAGS (http://mcmc-jags.sourceforge.net)
BAYESDEF Tcl/Tk package
bayesdfa GNU make
BayesFM gfortran (>= 4.6.3)
bayeslm GNU make
BayesPostEst JAGS (http://mcmc-jags.sourceforge.net)
BayesSUR C++11
BayesXsrc GNU make
bcgam Rtools (>= 3.3) for Windows, Xcode (>= 9.0) for MacOS X
bdpar Python (>= 2.7)
bdpopt JAGS (>= 3.4.0) (seehttp://mcmc-jags.sourceforge.net)
beadarrayMSV GGobi
beanz GNU make
beastier BEAST2 (http://www.beast2.org/)
bedr Preferred genomic operations engine: 'BEDTools','BEDOPS' and 'Tabix (>= 1.3)'.
benchr C++11
bfp GNU make, C++11
bfw JAGS >=4.3.0 <http://mcmc-jags.sourceforge.net/>,Java JDK >=1.4 <https://www.java.com/en/download/manual.jsp>
BiBitR Java
bigGP OpenMPI or MPICH2
bigIntegerAlgos gmp (>= 4.2.3)
bigMap GNU make
bigtime C++11
BigVAR C++11
binostics C++11
bioacoustics C++11, cmake, fftw3, GNU make, soxr-lsr
BioMedR Java JDK 1.8 or higher
biplotbootGUI Tcl/Tk package BWidget.
bisque A system with a recent-enough C++11 compiler (suchas g++-4.8 or later).
blandr pandoc (>=1.12.3)
blastula pandoc (>= 1.12.3) - http://pandoc.org
blockcluster GNU make
blogdown Hugo (<https://gohugo.io>) and Pandoc(<https://pandoc.org>)
bmlm GNU make
BMTME C++11, GNU
bnclassify C++11
bookdown Pandoc (>= 1.17.2)
Boom GNU Make, C++11
botor boto3 (https://aws.amazon.com/sdk-for-python)
bpgmm C++11
breathtestcore pandoc
breathteststan GNU make, pandoc (>= 1.12.3), pandoc-citeproc
BRugs OpenBUGS (>= 3.2.2), hence Windows or Linux
bsam JAGS (>= 4.2.0)
bssm C++11
BTLLasso C++11
BTM C++11
BTSPAS JAGS
BuyseTest C++11
cairoDevice cairo (>= 1.0)
camtrapR ExifTool(http://www.sno.phy.queensu.ca/~phil/exiftool/)
caRpools MAGeCK (=0.51, fromhttp://sourceforge.net/p/mageck/wiki/Home/), bowtie2(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
cartography GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ.4 (>= 4.8.0)
CASMAP C++11
catSurv C++11, GNU make
causalMGM Java (>= 1.7), JRI
CEC C++11
chebpol fftw3 (>= 3.1.2), gsl
chicane bedtools
ChoR Java (>= 8)
cit gsl (with development libraries)
cld3 libprotobuf and protobuf-compiler
cleanNLP Python (>= 3.6.0)
clpAPI COIN-OR Clp (>= 1.12.0)
clusternor GNU make C++11, pthreads
ClusterR libarmadillo: apt-get install -y libarmadillo-dev(deb), libblas: apt-get install -y libblas-dev (deb),liblapack: apt-get install -y liblapack-dev (deb),libarpack++2: apt-get install -y libarpack++2-dev (deb),gfortran: apt-get install -y gfortran (deb), libgmp3: apt-getinstall -y libgmp3-dev (deb), libfftw3: apt-get install -ylibfftw3-dev (deb), libtiff5: apt-get install -y libtiff5-dev(deb)
cncaGUI Tcl/Tk package BWidget.
CNull C++11
coga GNU GSL
cogmapr libcurl: libcurl-devel (rpm) orlibcurl4-openssl-dev (deb).
CollapsABEL PLINK2, Java (>= 8.0), mysql
collUtils Java (>= 1.6)
comat C++11
COMBIA perl (>= 5.10.0)
CommonJavaJars Java (>= 5.0)
compendiumdb Perl (>=5), MySQL (>=5.6)
concaveman GDAL (>= 2.0.0), GEOS (>= 3.3.0), PROJ.4 (>= 4.8.0)
conquestr ACER ConQuest (>=4.30.2)
CONS Tcl/Tk package
conStruct GNU make
contoureR C++11
convexjlr Julia (>= 0.6.0), Convex.jl, SCS.jl, ECOS.jl
CoordinateCleaner GDAL (>= 2.0.1)
cordillera ELKI (>=0.6.0 if used)
corehunter Java JRE 8 or higher
coreNLP Java (>= 7.0); Stanford CoreNLP<http://nlp.stanford.edu/ software/corenlp.shtml> (>= 3.5.2)
corpustools C++11
corrcoverage C++11
couchDB couchDB instance to connect to and work with.
coveffectsplot pandoc with https support
covTestR C++11
coxinterval GNU make
CPAT GNU make
cplexAPI IBM ILOG CPLEX (>= 12.1)
cppRouting GNU make, C++11
credentials git (optional)
cronR cron
Crossover Java (>= 5.0)
crypto libxml2-devel, libcurl-devel, openssl-devel,libsecret-devel, libsodium-devel
ctrdata sed, php, cat, perl
ctsem GNU make
cubature GNU make
curveDepth C++11
cusum C++11
cycleRtools Java (>= 1.5)
DALY Tcl/Tk (>= 8.5), Tktable (>= 2.9)
DatabionicSwarm C++11
dataframes2xls python (>= 2.4)
dataMaid pandoc (>= 2.0; https://pandoc.org), git, whoami
DataPackageR pandoc (>= 1.12.3) - http://pandoc.org
datastructures C++11
DataVisualizations C++11
datr dat (>= 13.10.0)
dbmss pandoc, GNU make
dbscan C++11
dclone none, one or more of JAGS (>= 3.0.0), WinBUGS (>=1.4), OpenBUGS (>= 3.2.2), Stan
DCM Tcl/Tk package
dcmle JAGS (>= 3.0.0)
ddalpha C++11
DDRTree C++11
decido C++11
Deducer Java (>= 1.4), JRI
DeducerSpatial Java (>= 1.5), JRI
DeducerText Java (>= 1.5), JRI
deisotoper Java (>= 8.0)
DeLorean GNU make
DEploid C++11
DepthProc C++11
designmatch GLPK library package (e.g., libglpk-dev onDebian/Ubuntu)
DetR C++11
detrendr GNU make
devEMF Xft or zlib (only needed for platforms other thanOSX and Windows)
dfmeta C++11
dfped C++11
dfpk GNU make
dggridR C++11
dgmb tktable, BWidget
dialr java (>= 1.6)
dialrjars java (>= 1.6)
diffeqr Julia (>= 0.6.0), DifferentialEquations.jl
diffusr C++11
dipsaus GNU make
disaggregation GNU make
disclapmix C++11
discretecdAlgorithm C++11
diskImageR ImageJ (all OS), Xcode (Mac)
diversitree fftw3 (>= 3.1.2), gsl (>= 1.15)
docknitr Docker
docxtractr LibreOffice (<https://www.libreoffice.org/>)required to extract data from .doc files.
domino domino (~>1.7.1)
dosearch C++11
downscaledl C++11
dpa Tcl/Tk package BWidget.
DRIP Gnu Scientific Library version >= 1.12
DtD C++11
dti gsl
dynamichazard C++11
dynBiplotGUI gmake
dynr GNU make
earthtide C++11
easyNCDF netcdf development libraries
ECOSolveR GNU make
edeR Java Runtime Environment
eDMA Requires the OpenMP library for parallel computing.If the OpenMP library is not available, the code is executedsequentially and a warning is printed.
eggCounts GNU make
elexr Python (>= 2.7 or >= 3.5) and elex package
elfDistr C++11
Emcdf C++11
EMMIXgene C++11
emstreeR C++11 compiler.
entropart pandoc
eplusr EnergyPlus (>= 8.3, optional)(<https://energyplus.net>); udunits2
eseis gipptools dataselect
evaluator pandoc
exactextractr GEOS (>= 3.5.0)
excerptr Python (>= 3.0.0)
exif C++11
exifr Perl
exiftoolr Perl
expands Java (>= 5.0)
extraTrees Java (>= 1.6)
ezknitr pandoc with https support
facilitation C++11
fastcmh C++11
fastdigest C++11
fasterize C++11
FastHCS C++11
FastPCS C++11
FastRCS C++11
fdaPDE C++11
fdasrvf C++11
febr pandoc
FFD BWidget
fftw fftw3 (>= 3.1.2)
fftwtools fftw3 (>= 3.1.2)
fishMod C++11
FishResp Display resolution >= 1280x800; RAM >= 4GB
FIT C++11
fit4NM Tcl/Tk package TkTable.
fixest C++11
flan GNU GSL
flsa C++11
FLSSS GNU make
foieGras C++11, GDAL (>= 2.4.2), GEOS (>= 3.7.0), PROJ (>=5.2.0)
forensim Tcl/Tk package TkTable.
forestFloor OpenGL, GLU Library, zlib
fplot C++11
freealg C++11
freesurfer Freesurfer (https://surfer.nmr.mgh.harvard.edu/)
freetypeharfbuzz GNU make
frequency pandoc (>= 1.12.3) - http://pandoc.org
fRLR GNU Scientific Library (GSL). Note: users shouldhave GSL installed.
fsdaR (license-free) MATLAB Runtime (MCR) V 9.0
FSelectorRcpp C++11
FSInteract C++11
fslr FSL
fst little-endian platform
fusedest C++11
fuzzywuzzyR Python (>= 2.4), difflib, fuzzywuzzy ( >=0.15.0 ),python-Levenshtein ( >=0.12.0 ). Detailed installationinstructions for each operating system can be found in theREADME file.
fwsim C++11
gaselect C++11
gastempt GNU make
gcbd Debian or Ubuntu system with access to Goto Blas,Intel MKL, Atlas development build as well as a Nvidia GPU withCUDA support
gcForest Python (>= 3.5.0)
GCPM Windows, Linux, OS X
gdalcubes cxx11, gdal, libgdal, libproj, libcurl, netcdf4
gdalUtils GDAL binaries
gdtools cairo, freetype2
gee4 C++11
GeneralizedUmatrix C++11
genie OpenMP, C++11
genlogis RStudio - http://www.rstudio.com/products/rstudio/
geno2proteo Perl (>= 2.0.0)
genotypeR The SequenomMarkers() marker design functionrequires 'vcftools' and 'Perl' on 'windows', and, in addition,'awk' and 'bash' on '*nix'.
geojsonR The package requires a C++11 compiler.
geometr C++11
GeoMongo MongoDB (>= 3.4.0), Python (>= 2.7). Installationinstructions and links can be found in the README file.
geoops C++11
GERGM GNU make
gert libgit2 (>= 0.26): libgit2-devel (rpm) orlibgit2-dev (deb)
GetoptLong Perl, Getopt::Long
ggdemetra Java SE 8 or higher
GGEBiplotGUI BWidget
ggquickeda pandoc with https support
gifski Cargo (rustc package manager)
gkmSVM C++11
glmmfields GNU make
glmulti Java (>= 5.0)
gMCP Java (>= 5.0)
GMKMcharlie GNU make
gmp gmp (>= 4.2.3)
gmt gmt
gnn TensorFlow (https://www.tensorflow.org/)
googlePolylines C++11
govdown pandoc (>= 2.0) - http://pandoc.org
GPCMlasso C++11
gpg GPGME: libgpgme-dev / libgpgme11-dev (deb),gpgme-devel (rpm) gpgme (brew). On Linux 'haveged' isrecommended for generating entropy when using the GPG keygenerator.
gpuR C++11 (supporting at least std=c++0x), OpenCLshared library (provided by an SDK such as AMD/NVIDIA) andOpenCL headers including the C++ header file (provided byKhronos if not by SDK)
GRANBase svn, git
GreedyExperimentalDesign Java (>= 7.0)
GreedyExperimentalDesignJARs Java (>= 7.0)
grf GNU make
gridDebug graphviz
gridGraphviz graphviz
grImport ghostscript
gsl Gnu Scientific Library version >= 2.1
gsynth A C++11 compiler.
gtfsrouter C++11
gwsem GNU make
h2o4gpu Python (>= 3.6) with header files and sharedlibrary; H2O4GPU (https://github.com/h2oai/h2o4gpu)
hBayesDM GNU make
hdf5r HDF5 (>= 1.8.13)
hdfqlr HDFql (>= 2.1.0)
HDPenReg GNU make
helloJavaWorld Java (>= 1.5)
hesim C++11
heuristicsmineR C++11
HHG C++11
HiClimR NetCDF (>= 4.1)
HierDpart GNU make
hipread C++11
hive Apache Hadoop >= 2.6.0(https://hadoop.apache.org/releases.html#Download); Obsolete:Hadoop core >= 0.19.1 and <= 1.0.3 or CDH3(http://www.cloudera.com); standard unix tools (e.g., chmod)
HMMmlselect C++11
hopit C++11
HRM C++11
HTLR C++11
HydeNet JAGS (http://mcmc-jags.sourceforge.net)
hypergea OpenMP (>=3.0)
HypergeoMat C++11
iai Julia (>= 1.0) and Interpretable AI System Image(>= 1.0.0)
ICRanks C++11
idealstan GNU make
idem GNU make
idm ImageMagick (http://imagemagick.org) orGraphicsMagick (http://www.graphicsmagick.org)
ieeeround A C library with the fesetround/fegetroundfunctions.
igate pandoc (>= 1.12.3) - http://pandoc.org
ijtiff libtiff, libjpeg, zlib
implyr Impala driver to support a 'DBI'-compatible Rinterface
imptree C++11
inca C++11
IncDTW GNU make
inlmisc pandoc - https://pandoc.org/
inpdfr XPDF (http://www.foolabs.com/xpdf/download.html)
interpret C++11
IOHanalyzer C++11
ip2location IP2Location Python library<https://www.ip2location.com/development-libraries/ip2location/python>
iptools C++11
IRATER AD Model Builder <http://admb-project.org>
iRF C++11
IRkernel jupyter, jupyter_kernel_test (Python package fortesting)
ISEtools OpenBUGS (>=3.0) OR jags (>=4.0.0)
isoband C++11
IsoSpecR C++14
isqg C++11
IUPS JAGS (>= 3.3.0)
jaccard C++11
jackalope GNU make, C++11
jagsUI JAGS (http://mcmc-jags.sourceforge.net)
jarbes JAGS (>= 3.4.0) (seehttp://mcmc-jags.sourceforge.net)
JavaGD GNU make
jdx Java Runtime Environment (>= 8)
JGR Java JDK 1.4 or higher
JMbayes JAGS (http://mcmc-jags.sourceforge.net)
jmcm C++11
JMcmprsk GNU GSL
jmvconnect jamovi (>= 0.9.1.11), C++11
JointAI JAGS (http://mcmc-jags.sourceforge.net)
jqr libjq: jq-devel (rpm) or libjq-dev (deb)
jSDM GNU GSL
jSonarR MongoDB, JSON Studio
jsr223 Java Runtime Environment (>= 8)
JuliaCall Julia >= 0.6.0, RCall.jl
junctions C++11
kantorovich GMP (https://gmplib.org/)
kde1d C++11
kerasR Python (>= 2.7); keras <https://keras.io/> (>=2.0.1)
KernelKnn libarmadillo: apt-get install -y libarmadillo-dev(deb), libblas: apt-get install -y libblas-dev (deb),liblapack: apt-get install -y liblapack-dev (deb),libarpack++2: apt-get install -y libarpack++2-dev (deb),gfortran: apt-get install -y gfortran (deb)
keyring Optional: libsecret on Linux (libsecret-1-dev onDebian/Ubuntu, libsecret-devel on Fedora/CentOS)
klaR SVMlight
kmcudaR CUDA 8.0 tookit, OpenMP 4.0 capable compiler
knn.covertree C++11
knor GNU make C++11, pthreads
KoNLP Java (>= 1.6)
KSgeneral fftw3 (>=3.3.4), C++11
kza fftw (>= 3.2.2)
lamW GNU make
landscapemetrics C++11
landsepi C++11, gsl, gdal >= 1.11.0
latdiag dot from graphviz
latte LattE <https://www.math.ucdavis.edu/~latte/>, 4ti2<http://www.4ti2.de/>
LCMCR Gnu Scientific Library version >= 1.12
lda.svi C++11
ldat C++11
LeafArea ImageJ (>=1.48), ij.jar (seehttp://imagej.nih.gov/ij/), Java (>=1.6.0)
ledger ledger (>= 3.1), hledger (>= 1.4), beancount (>=2.0)
lfl C++11
Libra GNU Scientific Library (GSL)
libsoc libxml2: libxml2-dev (deb), libxml2-devel (rpm)
libstableR GNU GSL
liftr Docker (see <https://docs.docker.com/install/>)
lightsout pandoc with https support
link2GI GNU make
lira JAGS (>= 3.0.0) (seehttp://mcmc-jags.sourceforge.net)
littler libR
lmSubsets C++11
LocalControl C++11
localsolver At least trial version of LocalSolver to bedownloaded from http://www.localsolver.com/download.html
logKDE C++11
lowmemtkmeans C++11
lutz C++11
lvec C++11
lwgeom GEOS (>= 3.3.0), PROJ (>= 4.8.0)
m2r Macaulay2 <http://www.math.uiuc.edu/Macaulay2/>
MADPop GNU make
magickGUI ImageMagick (>= 6.9.5.4)
mailR Java
mallet java
MaOEA Python 3.x with following modules: PyGMO, NumPy,and cloudpickle
mapview GNU make
marked ADMB version 11 <http://admb-project.org/> foruse.admb=TRUE; see readme.txt
markovchain GNU make
matchingMarkets Java, C++11
matlabr MATLAB
mauricer BEAST2 (http://www.beast2.org/)
MaxentVariableSelection maxent.jar file
mbbefd GNU make
MBNMAdose JAGS (>= 4.3.0) (http://mcmc-jags.sourceforge.net)
MBNMAtime JAGS (>= 4.3.0) (http://mcmc-jags.sourceforge.net)
mboxr Anaconda (https://www.anaconda.com/download/)
MCMCglmm C++11
mdendro Java (>= 6)
MDFS C++11
meltt Python (>= 2.7)
metaBMA GNU make
metaMix Open MPI (>=1.4.3)
metapost mpost
MetaSKAT Little Endian
MetaStan GNU make
meteor C++11
mets C++11
mfbvar GNU make
MFPCA libfftw3 (>= 3.3.4)
miceFast C++11
microbenchmark On a Unix-alike, one of the C functionsmach_absolute_time (macOS), clock_gettime or gethrtime. If noneof these is found, the obsolescent POSIX function gettimeofdaywill be tried.
microclass GNU make
milr GNU make
miniCRAN Imports the `curl` and `XML` packages. These havesystem requirements on `libxml2-devel`, `libcurl-devel` and`openssl-devel`.
MixAll GNU make
mixedClust C++11
MixGHD GNU make
MixSIAR JAGS (>= 4.1) for the script version, both JAGS andGTK+ for the GUI version. For install instructions, see READMEfile.
mixture GNU make
mleap Apache Spark 2.0+, Apache Maven 3.5+, Java JDK 8,MLeap Runtime 0.10.1+
mod09nrt MRTSwath
modeLLtest GNU make
MODIS GDAL (>= 1.8.0)
MODIStsp Cairo >= 1.0.0, ATK (>= 1.10.0), Pango (>= 1.10.0),GTK+ (>= 2.8.0), GLib (>= 2.8.0), Curl, GDAL (>= 1.6.3), PROJ.4(>= 4.4.9)
MonetDB.R MonetDB, available from http://www.monetdb.org orMonetDBLite R package
mongolite OpenSSL, Cyrus SASL (aka libsasl2)
monoreg GNU GSL
morse JAGS (>= 4.0.0) (seehttp://mcmc-jags.sourceforge.net)
motmot C++11
move C++11
moveVis ImageMagick, FFmpeg, libav
MplusTrees 'Mplus' (<http://www.statmodel.com>)
mrbayes JAGS 4.x.y
mrgsolve C++11
mRpostman libcurl: libcurl-devel (rpm) orlibcurl4-openssl-dev (deb)
mscstexta4r A valid account MUST be registered with Microsoft'sCognitive Services website<https://www.microsoft.com/cognitive-services/> in order toobtain a (free) API key. Without an API key, this package willnot work properly.
mscsweblm4r A valid account MUST be registered with Microsoft'sCognitive Services website<https://www.microsoft.com/cognitive-services/> in order toobtain a (free) API key. Without an API key, this package willnot work properly.
MSIseq Java
mssm C++11
MUACz GNU make
multibiplotGUI Tcl/Tk package BWidget.
multicool C++11
multinet A C++14 compiler
mutossGUI Java (>= 5.0)
mvp C++11
mvst GNU Scientific Library
mwa Java (>= 6.0)
mwaved fftw3 (>= 3.3.4)
Myrrix Java (>= 5.0)
Myrrixjars Java (>= 5.0)
NACHO pandoc (>= 1.12.3), pandoc-citeproc
nbconvertR pandoc, jupyter, jupyter nbconvert ("nbconvert"python package), pywin32 (on windows)
ncdf4 netcdf library version 4.1 or later
ndjson zlib, C++14
NestedCategBayesImpute GNU make
NetMix C++11
NetRep A compiler with C++11 support for the threadlibrary, Requires Rtools >= 33 (i.e. R >= 3.3.0) to build onWindows.
NetworkInference C++11
networkR C++11
networkreporting GNU make
nFCA Ruby, Graphviz
nhdR 7-zip command line tool (7z)
NlinTS C++11
NLMR C++11
nlrx NetLogo (>= 5.3.1), Java (JDK 1.8), pandoc,OpenSSL, udunits-2, PROJ.4, GEOS, GDAL, libxml2
nmfgpu4R CUDA >= v7.0, Nvidia GPU (e.g. GeForce or Tesla)with compute capability >= 3.0 (Kepler)
nmslibR Python (>= 2.7), nmslib ( >= 1.7.1), scipy ( >=1.0.0), numpy ( >= 1.14.0). Detailed installation instructionsfor each operating system can be found in the README file.
nopaco C++11
NPMOD Tcl/Tk package
Numero C++11
oceanmap ImageMagick
ODB zip
odbc C++11, GNU make, An ODBC3 driver manager anddrivers.
odeintr C++11
OligoSpecificitySystem Tcl/Tk package BWidget.
OncoBayes2 GNU make, pandoc (>= 1.12.3), pandoc-citeproc
OpenCL OpenCL library
opencpu pandoc, apparmor (optional)
openCR GNU make
opencv OpenCV: libopencv-dev (Debian, Ubuntu) oropencv-devel (Fedora)
OpenImageR libarmadillo: apt-get install -y libarmadillo-dev(deb), libblas: apt-get install -y libblas-dev (deb),liblapack: apt-get install -y liblapack-dev (deb),libarpack++2: apt-get install -y libarpack++2-dev (deb),gfortran: apt-get install -y gfortran (deb), libjpeg-dev:apt-get install -y libjpeg-dev (deb), libpng-dev: apt-getinstall -y libpng-dev (deb), libfftw3-dev: apt-get install -ylibfftw3-dev (deb), libtiff5-dev: apt-get install -ylibtiff5-dev (deb)
OpenMx GNU make
openNLP Java (>= 5.0)
openNLPdata Java (>= 5.0)
OpenStreetMap Java (>= 1.5), JRI
oppr C++11
ora Oracle client
orca C++11
Orcs GNU make, 7zip, unix2dos
orderly git
ordinalClust C++11
ordinalgmifs C++11
orQA GNU make
osmose Java (>= 8)
osrmr To use the Localhost of OSRM, you need to buildOSRM<https://github.com/Project-OSRM/osrm-backend/wiki/Building-OSRM>locally
otsad Python (>= 3.0.1); bencode-python3 (1.0.2)
outbreaker gsl (>= 1.12)
outbreaker2 C++11
OwenQ C++11
PAC C++11
PACVr mosdepth
pagedown Pandoc (>= 2.2.3)
pandocfilters pandoc (> 1.12)
parallelDist C++11
paramlink For the MERLIN wrapper, MERLIN(http://csg.sph.umich.edu/abecasis/Merlin/) must be installedand pointed to in the PATH environment variable.
parglm C++11
particles C++11
patchDVI The 'Japanese.Rnw' vignette requires uplatex anddvipdfmx.
pathfindR Java (>= 8.0)
patternplot GNU make
paws.common pandoc (>= 1.12.3) - http://pandoc.org
pbdBASE OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. MS-MPI (Microsoft HPC Pack 2012) or MPICH2 (>=1.4.1p1) on Windows.
pbdDEMO OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. MS-MPI (Microsoft HPC Pack 2012 R2 MS-MPIRedistributable Package) on Windows.
pbdDMAT OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. MS-MPI (Microsoft HPC Pack 2012) or MPICH2 (>=1.4.1p1) on Windows.
pbdMPI OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. MS-MPI (Microsoft MPI v7.1 (SDK) and Microsoft HPCPack 2012 R2 MS-MPI Redistributable Package) on Windows.
pbdNCDF4 OpenMPI (>= 1.5.4) on Solaris, Linux and Mac.(Parallel) HDF5 and (Parallel) NetCDF4 (4.1 or later)libraries. No MPI library required on Windows.
pbdPROF OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. No MPI library required on Windows yet.
pbdRPC ssh (OpenSSH) or plink (PuTTY) on Solaris, Linux,and Mac.
pbdSLAP 'OpenMPI' (>= 1.5.4) on Solaris, Linux, Mac, andFreeBSD. 'MS-MPI' (Microsoft HPC Pack 2012 R2 MS-MPIRedistributable Package) on Windows.
pbdZMQ Linux, Mac OSX, and Windows, or 'ZeroMQ' library >=4.0.4. Solaris 10 needs 'ZeroMQ' library 4.0.7 and 'OpenCSW'.
PBSmapping C++11
PBSmodelling BWidget
pcaL1 COIN-OR Clp (>= 1.12.0)
pcFactorStan GNU make
PCMRS C++11
pcnetmeta JAGS 4.x.y (http://mcmc-jags.sourceforge.net)
pdftools Poppler C++ API: libpoppler-cpp-dev (deb) orpoppler-cpp-devel (rpm). The unit tests also require the'poppler-data' package (rpm/deb)
pdSpecEst GNU make, C++11
PenCoxFrail C++11
permGPU Nvidia's CUDA toolkit (>= release 6.0)
ph2hetero GNU make
phase1PRMD JAGS (http://mcmc-jags.sourceforge.net)
PhViD Tcl/Tk package TkTable.
Phxnlme Phoenix NLME with Phoenix Modeling Language (PML)license
PhyloMeasures C++11
phylotaR BLAST+ (>=2.0)
piecepackr ghostscript
piton C++11
pivmet pandoc (>= 1.12.3), pandoc-citeproc
PKI OpenSSL library and headers
planar GNU make
Plasmidprofiler Pandoc (>= 1.15)
plinkQC plink (1.9)
pm4py Python (>= 3.6)
PMCMRplus gmp (>= 4.2.3), mpfr (>= 3.0.0) | file README.md
poisbinom fftw (>= 3)
pomp For Windows users, Rtools (seehttps://cran.r-project.org/bin/windows/Rtools/).
PopGenome zlib headers and library.
PortfolioEffectEstim Java (>= 1.7)
PortfolioEffectHFT Java (>= 1.7)
PreKnitPostHTMLRender pandoc (>= 1.12.3) -http://johnmacfarlane.net/pandoc
PReMiuM GNU make
prettydoc pandoc (>= 1.12.3)
prevalence JAGS (>= 3.2.0) (seehttp://mcmc-jags.sourceforge.net)
PRIMME A POSIX system. Currently Linux and OS X are knownto work. GNU make.
prioritizr C++11
proccalibrad MRTSwath
ProFound C++11
proj4 proj 4.4.6 or higher (http://proj.maptools.org/)
ProjectionBasedClustering C++11
prophet C++11
protolite libprotobuf and protobuf-compiler
protr ncbi-blast+ (see<https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download>)
protViz C++11
proxyC C++11
pseudorank C++11
PTXQC pandoc (http://pandoc.org) for building Vignettesand output reports as HTML
PVAClone JAGS (>= 3.0.0)
pysd2r 'python3' needs to built for the same architectureR is built for (32 or 64 bit).
PythonInR Python (>= 2.7.0) with header files and sharedlibrary (UNIX) / static library (Windows)
qCBA Java (>= 8)
qmix GNU make
qs C++11
qtbase Qt4 libraries and headers (http://qt.nokia.com),cmake (http://www.cmake.org)
qtpaint GNU make
qualpalr GNU make
QuantTools C++11
questionr xclip (Linux)
r.blip Java (>= 1.5)
R2admb AD Model Builder <http://admb-project.org>
R2GUESS GNU Scientific Library (>= 1.12)
R2jags JAGS (http://mcmc-jags.sourceforge.net)
R2MLwiN MLwiN, (OpenBUGS, WinBUGS optional)
R2OpenBUGS OpenBUGS (>= 3.2.2)
r2pmml Java (>= 8.0)
R2SWF zlib, libpng, FreeType
R2WinBUGS OpenBugs for functions bugs() and openbugs() orWinBUGS 1.4 for function bugs()
raceland C++11
ragg C++11, freetype2 libpng
rapidraker Java (>= 7.0)
RAppArmor linux (>= 3.0), libapparmor-dev
rapport pandoc (http://johnmacfarlane.net/pandoc) forexporting markdown files to other formats.
raptr C++11
rasciidoc asciidoc (<https://asciidoc.org>), source-highlightis recommend.
rbart C++11
RBesT GNU make, pandoc (>= 1.12.3), pandoc-citeproc
Rbgs Java JRE 1.6 or higher ; Xuggle-xuggler-5.4.jar inlibrary paths and class paths.
rbi LibBi (>= 1.4.2)
rbi.helpers libbi (>= 1.4.2)
Rblpapi A valid Bloomberg installation. The API headers anddynamic library are downloaded from<https://github.com/Rblp/blp> during the build step. See<https://bloomberg.github.io/blpapi-docs/cpp/3.8> as well as<https://www.bloomberg.com/professional/support/api-library/>for API documentation. A compiler recent enough for (at leastpartial) C++11 support is required; g++-4.6.* or later shouldbe sufficient and g++-4.9.* or later is preferred.
rblt libhdf5 (>= 1.8.12)
Rborist g++ (>= 4.8)
rCBA Java (>= 8)
rcdd GMP (GNU MP bignum library from<http://gmplib.org/>)
rcdk Java JDK 8 or higher
Rcereal C++11
rchie V8 <= 3.15: libv8-3.14-dev (deb), v8-314-devel(rpm), v8-3.14 (arch), v8@3.15 (homebrew)
RcmdrPlugin.RMTCJags jags (>= 3.0.0)
Rcplex IBM ILOG CPLEX libraries and headers
RCPmod C++11
Rcpp11 C++11
RcppAlgos C++14, gmp (>= 4.2.3)
RcppCCTZ A 64-bit POSIX OS such as Linux or OS X with IANAtime zone data in /usr/share/zoneinfo as well as arecent-enough C++11 compiler (such as g++-4.9 or later which ispreferred, g++-4.8 works too). On Windows the zoneinfo includedwith R is used; and time parsing support is enabled via abackport of std::get_time from the LLVM libc++ library.
RcppCWB GNU make, pcre (>= 7), GLib (>= 2.0.0). On Windows,no prior installations are necessary, as pre-built (i.e.cross-compiled) binaries of required libraries are downloadedfrom a GitHub repository (<https://github.com/PolMine/libcl>)during installation. On macOS, static libraries of Glib aredownloaded (<https://github.com/PolMine/libglib>) if Glib isnot present.
RcppEigenAD C++11
RcppEnsmallen C++11
RcppGetconf A POSIX system. Currently Linux and OS X are knownto work.
RcppGreedySetCover C++11
RcppGSL GNU GSL
RcppHMM C++11
RcppMeCab MeCab 0.996 (or mecab-ko 0.9.2) or higher, GNU make
RcppMLPACK A C++11 compiler. Versions 4.8.*, 4.9.* or later ofGCC will be fine.
RcppRedis An available hiredis library (eg via packagelibhiredis-dev on Debian/Ubuntu, hiredis-devel onFedora/RedHat, or directly from source from<https://github.com/redis/hiredis>) is preferred but otherwisebuilt on demand.
RcppThread C++11
RcppTOML A C++11 compiler; g++ (>= 4.8.*) should be fine.
rcrypt GnuPG (https://gnupg.org/)
rdataretriever Python (>= 3.0) and Python headers and libraries
rde xclip (https://github.com/astrand/xclip) or xsel(http://www.vergenet.net/~conrad/software/xsel/) for accessingthe X11 clipboard
rDEA GLPK (>= 4.52)
RDieHarder GNU GSL for the GSL random-number generators
rDotNet mono 4.x or higher on OSX / Linux, .NET 4.x orhigher on Windows, 'msbuild' and 'nuget' available in the path
rdoxygen doxygen
Rdrools Java (>= 7.0)
Rdroolsjars Java (>= 7.0)
rdwd Pandoc (>= 1.12.3), pandoc-citeproc
re2r GNU make
REBayes MOSEK (http://www.mosek.com) and MOSEK license.
reclin C++11
recmap C++11
recosystem C++11
recurse C++11
redist gmp, libxml2
redland Mac OSX: redland (>= 1.0.14) ; Linux: librdf0 (>=1.0.14), librdf0-dev (>= 1.0.14)
redux hiredis
reinforcelearn (Python and gym only required if gym environmentsare used)
relSim C++11
REPLesentR Presentations written in (R)Markdown require Pandoc(http://pandoc.org).
RepoGenerator GitHub, 'RStudio'
represtools GNU make
reproducible 'unrar' (Linux/macOS) or '7-Zip' (Windows) to workwith '.rar' files.
reproj PROJ (>= 4.4.6)
rerf GNU make
resautonet C++11
Rfast C++11
Rfast2 C++11
RFreak Java (>= 5.0)
rgdal for building from source: GDAL >= 1.11.4, libraryfrom https://trac.osgeo.org/gdal/wiki/DownloadSource and PROJ.4(proj >= 4.8.0) from https://download.osgeo.org/proj/; GDAL OSXframeworks built by William Kyngesburye athttp://www.kyngchaos.com/ may be used for source installs onOSX. For installation with older external dependencies,override configure checks with--configure-args="enable-deprecated=yes". Consider sourceinstallations using archived versions of rgdal contemporarywith installed external dependencies, for example rgdal_0.8-7for PROJ4 4.8.0 (March 2012).
rgeos GEOS (>= 3.2.0); for building from source: GEOSfrom http://trac.osgeo.org/geos/; GEOS OSX frameworks built byWilliam Kyngesburye at http://www.kyngchaos.com/ may be usedfor source installs on OSX.
RGF Python (2.7 or >= 3.4), rgf_python, scikit-learn(>= 0.18.0), scipy, numpy. Detailed installation instructionsfor each operating system can be found in the README file.
rggobi GGobi
Rgnuplot gnuplot
rgrass7 GRASS (>= 7)
rGroovy Java (>= 7)
RGtk2 Cairo (>= 1.0.0), ATK (>= 1.10.0), Pango (>=1.10.0), GTK+ (>= 2.8.0), GLib (>= 2.8.0)
RH2 java runtime
rhli GNU make
Rhpc R built as a shared or static library, 'MPI'library.
ridge Gnu Scientific Library version >= 1.14
RJaCGH zlib headers and library.
rjags JAGS 4.x.y
rJava Java JDK 1.2 or higher (for JRI/REngine JDK 1.4 orhigher), GNU make
RJDemetra Java SE 8 or higher
rJPSGCS Java (>= 8), zlib headers and library.
RJSDMX Java (>= 7)
rJython Java
rkafka Oracle Java 7,Apache Kafka 2.8.0-0.8.1.1
rkafkajars Oracle Java 7
RKEA Java (>= 5.0)
RKEAjars Java (>= 5.0)
RKEEL Java (>= 8)
Rlda GNU make
Rlgt GNU make
Rlibeemd GNU GSL
rLindo LINDO API 8.0
rlo libreoffice, python-uno
RMariaDB libmariadb-client-lgpl-dev or libmysqlclient-dev(deb), mariadb-connector-c-devel or mariadb-devel (rpm),mariadb-connector-c or mysql-connector-c (brew)
RMark notepad.exe, mark.exe (>= 8.0) (or mark32.exe andmark64.exe) and rel_32.exe (see README.txt)
rmatio zlib headers and library.
rmcfs Java (>= 7)
rmdcev GNU make C++14
rmdfiltr pandoc (>= 2.0; https://pandoc.org)
Rmixmod GNU make
RMOA Java (>= 5.0)
RMOAjars Java (>= 5.0)
Rmosek MOSEK (>= 6) and MOSEK License (>= 6)
rMouse Java >= 7
Rmpfr gmp (>= 4.2.3), mpfr (>= 3.0.0)
rmumps C++11, GNU Make
rMVP C++11
RMySQL libmariadb-client-dev | libmariadb-client-lgpl-dev| libmysqlclient-dev (deb), mariadb-devel (rpm), mariadb |mysql-connector-c (brew), mysql56_dev (csw)
RNCBIEUtilsLibs Java
rnetcarto GNU GSL
RNetCDF netcdf udunits-2
RNetLogo Java (>= 8.0), NetLogo (>= 6.0)
RNewsflow C++11
robfilter C++11
robustlmm C++11
RODBC An ODBC3 driver manager and drivers.
RODBCext An ODBC3 driver manager and drivers.
rodeo The tools to run 'R CMD SHLIB' on 'Fortran' code.The used 'Fortran' compiler must support pointer initializationwhich is a feature of the 2008 standard. The compiler fromOracle Developer Studio 12.6 on Solaris 10 currently does notmeet this requirement.
ROI.plugin.symphony SYMPHONY (>= 5.6.16) libraries and headers
roll GNU make, C++11
rollRegres C++11
ropenblas GNU Make, GCC Compiler Suite (C and Fortran)
ROpenCVLite cmake, C++11
roptim C++11
ROracle Oracle Instant Client or Oracle Database Client
rpanel BWidget
rpart.LAD C++11
RPEGLMEN C++11
rpg C++11
Rpoppler Poppler Glib interface headers and libraries(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:libpoppler-glib-dev, Fedora: poppler-glib-devel]
rpostgis 'PostgreSQL' with 'PostGIS' extension
rpostgisLT PostgreSQL with PostGIS extension
RPostgres libpq >= 9.0: libpq-dev (deb) or postgresql-devel(rpm)
rPref C++11, GNU make, Windows: cmd.exe and cscript.exe
RProtoBuf ProtoBuf libraries and compiler version 2.2.0 orlater; version 3.0.0 or later is supported as well. OnDebian/Ubuntu these can be installed as libprotoc-dev,libprotobuf-dev and protobuf-compiler, while on Fedora/CentOSprotobuf-devel and protobuf-compiler are needed.
RPushbullet A user API key (which one can request from thewebsite at <http://www.pushbullet.com>), and one or moredevices to push messages to which may be any one of an (Androidor iOS) phone, a (Chrome or Firefox, or Opera or Safari)browser or the (Windows or Mac) desktop application providedthe corresponding Pushbullet 'app' has been installed on anyone of these.
RPyGeo Python (>= 2.6.0), ArcGIS (>= 10.0)
rPython Python (>= 2.7) and Python headers and libraries(See the INSTALL file)
RQDA Java (>= 6) for rjpod
RQGIS Python (>= 2.7), QGIS (>= 2.14 & < 3)
RQuantLib QuantLib library (>= 1.14) fromhttp://quantlib.org, Boost library from http://www.boost.org
Rquefts C++11
rrd The package depends on libraries from the RRDproject <http://oss.oetiker.ch/rrdtool/>. On Debian-basedsystems, install 'librrd-dev', on CentOS based systems install'rrdtool-devel', and on Fedora-based systems install'rrdtool-devel'<https://apps.fedoraproject.org/packages/rrdtool-devel>. Formore information, see the README.
Rrdrand need the RDRAND instruction on Intel CPU. and Ccompiler must be able to compile a GNU-style in-line assembler.
rriskDistributions Tcl/Tk (>= 8.5), Tktable (>= 2.9)
rrum C++11
RSAGA SAGA GIS (2.3 LTS - 7.0.0)
Rsagacmd SAGA-GIS (>= 2.3.1)
rscala Scala (>= 2.11), Java (>= 8)
RScelestial C++11
Rserve libR, GNU make
RSiena GNU make, tcl/tk 8.5, Tktable
Rsmlx 'Monolix' (<http://monolix.lixoft.com>)
Rsomoclu C++11
rsparkling Java (>6)
Rssa fftw (>=3.2)
rstan GNU make, pandoc
rstanarm GNU make, pandoc (>= 1.12.3), pandoc-citeproc
rstanemax GNU make
rstap GNU make
rsubgroup Java (>= 6.0)
RSurvey Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
rsvg librsvg2
Rsymphony SYMPHONY libraries and headers
rsyslog POSIX.1-2001
RTD embulk, embulk-output-td
RTest ImageMagick++: ImageMagick-c++-devel (rpm) orlibmagick++-dev (deb)
rticles GNU make
rtiff libtiff
rtika Java (>=8)
rtk C++11
rtkore GNU make
rtmpt GSL (>=2.3)
rTorch PyTorch (https://pytorch.org/)
rTRNG GNU make
rubias GNU make
rucrdtw C++11
ruimtehol C++11
runjags JAGS (http://mcmc-jags.sourceforge.net)
ruta Python (>= 2.7); keras <https://keras.io/> (>= 2.1)
rvinecopulib C++11
RVowpalWabbit The Boost 'program_options' library(http://boost.org) is required.
RWebLogo Python (>=2.6) in path and NumPy module installed,ghostscript (>=9.0)
RWeka Java (>= 8)
RWekajars Java (>= 8)
Ryacas C++11
rzmq ZeroMQ >= 3.0.0: libzmq3-dev (deb) or zeromq-devel(rpm)
s2 OpenSSL >= 1.0.0, C++11
s2dverification cdo
salso Cargo (>= 1.31.0) [the Rust package manager]
saotd GSL (>=2.4), MPFR (>= 4.0.0), udunits2 (>=2.2.26-3)
SAR GNU make
SASmarkdown SAS
sass GNU make
SBRect java
sbrl gmp (>= 4.2.0), gsl
SBSA GNU make
Scalelink GNU make
scanstatistics C++11
SCAT C++11
scModels gmp (>= 4.2.3), mpfr (>= 3.0.0)
scoper C++11
SCPME GNU make
scrm C++11
scs GNU Make
sdcTable GLPK library, including -dev or -devel part
secr GNU make
seewave LIBSNDFILE
semver C++11
sen2r GDAL (>= 2.1.2), PROJ (>= 4.9.1), GEOS (>= 3.4.2),Cairo, Curl, NetCDF, jq, Protocol Buffers, V8, OpenSSL,Libxml2.
sendplot libtiff
sentometrics GNU make
SeqGrapheR ggobi
seqHMM C++11
seqinr zlib headers and library.
seqminer C++11, zlib headers and libraries, GNU make,optionally also bzip2 and POSIX-compliant regex functions.
sequenza pandoc (>= 1.12.3)
sf C++11, GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>=4.8.0)
sfheaders C++11
SFS C++11
sgmcmc TensorFlow (https://www.tensorflow.org/),TensorFlow Probability(https://www.tensorflow.org/probability/)
SGP (PDF)LaTeX (https://www.latex-project.org/) with'pdfpages' package for studentGrowthPlot option in visualizeSGPto bind together student growth plots into school catalogs
sharx jags (>= 1.0.3)
shinyalert pandoc with https support
shinytest PhantomJS (http://phantomjs.org/)
shortcuts RStudio
showtext zlib, libpng, FreeType
SIBER JAGS (>= 4.1)
simFrame GNU make
SimilaR C++11
SimInf GNU Scientific Library (GSL)
SimJoint GNU make
simplexreg GNU Scientific Library version >= 1.8
sismonr Julia, v 1.0 or later
skm GNU make
slowraker Java (>= 5.0)
smam GNU GSL, GNU make, C++11
SMITIDvisu C++11
SnakeCharmR Python (>= 2.7) and Python headers and libraries(See the README.md file)
sodium libsodium (>= 1.0.3)
SOFIA Circos
sound For playing sounds, a command line system tool forplaying wav-files is required.
sparkbq Spark (>= 2.2.x)
sparklyr.nested Spark: 1.6.x or 2.x
SparkR Java (== 8)
sparktf TensorFlow (https://www.tensorflow.org/)
sparkxgb Apache Spark 2.3+
sparseHessianFD C++11
spate fftw3 (>= 3.1.2)
SpatialPosition GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ.4 (>= 4.8.0)
SpatMCA GNU make
SpatPCA GNU make
spatsoc GEOS (>= 3.2.0)
spcosa Java (>= 6)
SpeciesMix C++11
specklestar fftw3 (>= 3.1.2)
spgrass6 GRASS (>= 6.3, < 7)
spiderbar C++11
spm12r MATLAB
spongecake FFmpeg (http://ffmpeg.org)
spray C++11
spread C++11
sptemExp C++11
ssh libssh >= 0.6.0 (the original, not libssh2)
ssMousetrack GNU make
statarepl Stata
StepSignalMargiLike C++11
stmgp PLINK must be installed
StMoSim C++11, GNU make
stplanr GNU make
streambugs C99
streamMOA Java (>= 8)
strex C++11
strider C++11
subprocess C++11
subspace Java (>= 6)
supc C++11
SuperGauss fftw3 (>= 3.1.2)
survHE GNU make
survSNP GNU GSL (>= 1.14)
svDialogs zenity, yad
svKomodo Komodo Edit (http://www.openkomodo.com), SciViews-K(http://www.sciviews.org/SciViews-K)
switchr git, svn
swmmr SWMM (>=5.1.012)
symmetry C++11
synchronicity C++11
sysfonts zlib, libpng, FreeType
tabr LilyPond (Only needed for rendering sheet music orwriting MIDI files)
tabulizer Java (>= 7.0)
tabulizerjars Java (>= 7.0)
tapkee 'tapkee' (http://tapkee.lisitsyn.me/)
TAQMNGR zlib headers and library
tcltk2 Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
TDA C++11, gmp
TDAstats C++11
telefit A system with a recent-enough C++11 compiler (suchas g++-4.8 or later).
tesseract Tesseract >= 3.03 (libtesseract-dev /tesseract-devel) and Leptonica (libleptonica-dev /leptonica-devel). On Debian you need to install the Englishtraining data separately (tesseract-ocr-eng)
TexExamRandomizer C++11, A modern compiler (>=gcc-4.9), And latexmkis necessary to compile all output documents with the functionsprovided by this package
textmineR GNU make, C++11
textTinyR The package requires a C++11 compiler
tfautograph TensorFlow (https://www.tensorflow.org/)
tfio TensorFlow >= 1.4 (https://www.tensorflow.org/)
TFMPvalue C++11
Thermimage exiftool, perl, ffmpeg, imagemagick
thurstonianIRT GNU make
tidycwl PhantomJS (https://phantomjs.org), pandoc (>=1.12.3) - https://pandoc.org.
tikzDevice pgf (>= 2.00)
tiler Python (>= 2.7), python-gdal library (For Windows,gdal installed via OSGeo4W <https://trac.osgeo.org/osgeo4w/>recommended) clipboard
timechange A system with zoneinfo data (e.g./usr/share/zoneinfo) as well as a recent-enough C++11 compiler(such as g++-4.8 or later). On Windows the zoneinfo includedwith R is used.
TKF gsl
tkrgl rgl packages for rendering
tkRplotR Tcl/Tk (>= 8.6)
tokenbrowser C++11
TooManyCellsR 'TooManyCells'(https://github.com/GregorySchwartz/too-many-cells)
touch C++11
trackdem Python (>=2.7), Libav, ExifTool
trackter FFmpeg
TraMineR C++11
transformr C++11
TreeBUGS JAGS (http://mcmc-jags.sourceforge.net)
trialr GNU make
trustOptim C++11
TukeyRegion C++11
tutorial pandoc (>= 1.12.3) -http://johnmacfarlane.net/pandoc
uavRmp GNU make
ubiquity Perl
uchardet C++11, GNU make
udunits2 udunits-2
ulid C++11
unine C++11
units udunits-2
unix POSIX.1-2001
unmarked GNU make
untb PARI/GP >= 2.3.0 [strongly recommended forlogkda()]
upmfit JAGS (http://mcmc-jags.sourceforge.net)
valection valection (>= 1.0.0)
validatejsonr GNU make
valr C++11
vapour GDAL (>= 2.0.0), PROJ.4 (>= 4.8.0)
VARsignR gcc (>= 4.0)
vaultr vault
VBLPCM Gnu Scientific Library
velox C++11
VIMGUI BWidget
visit GNU make
vlad C++11
walker C++14, GNU make
webdriver PhantomJS (http://phantomjs.org/)
WebGestaltR C++11
webp libwebp
websocket GNU make, OpenSSL >= 1.0.1
WeightedCluster C++11
wgaim asreml-R 4.x
WhopGenome zlib headers and library
wordnet Java (>= 5.0); WordNet database files (directdownload:<http://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz>; Debianand Fedora package: wordnet)
workflowr pandoc (>= 1.12.3) - http://pandoc.org
WriteXLS Perl
wsrf C++11
x.ent Perl (>= 5.0), Unitex (>= 3.0http://www-igm.univ-mlv.fr/~unitex/)
XBRL libxml2 (>= 2.9.1)
xgobi The standalone program xgobi must be installedadditionally, see file README, or INSTALL.windows under Windows
XLConnect Java (>= 6)
XLConnectJars Java (>= 6)
xlsx java (>= 1.6)
XRJulia Julia, v 1.0 or later
xslt libxslt: libxslt1-dev (deb), libxslt-devel (rpm)
xyz C++11
youtubecaption Anaconda (https://www.anaconda.com/download/)
YPPE GNU make
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