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Plotting Andrews curves using dplyr and ggplot2
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## https://en.wikipedia.org/wiki/Andrews_plot | |
library(dplyr) | |
library(ggplot2) | |
do.andrews <- function(x,breaks=30) { | |
require(reshape2) | |
t <- seq(-pi, pi, pi/breaks) | |
m<-nrow(x) | |
n<-ncol(x) | |
f <- matrix(t,nrow=length(t),ncol=n) | |
j <- seq(2,n) | |
f[,j[j%%2==0]] <- sweep(f[,j[j%%2==0],drop=FALSE], | |
2, | |
j[j%%2==0]/2, | |
`*`) | |
f[,j[j%%2!=0]] <- sweep(f[,j[j%%2!=0],drop=FALSE], | |
2, | |
j[j%%2!=0]%/%2, | |
`*`) | |
f[,j[j%%2==0]] <- sin(f[,j[j%%2==0]]) | |
f[,j[j%%2!=0]] <- cos(f[,j[j%%2!=0]]) | |
f <- x[,j]%*%t(f[,j]) | |
f <- f+matrix(x[,1]/2^0.5,nrow=m,ncol=length(t),byrow=F) | |
res <- melt(f,varnames=c('RowId','AndrewsId'),value.name = 'AndrewsValue') | |
res[,'AndrewsId'] <- t[res[,'AndrewsId']] | |
return(res) | |
} | |
iris %>% | |
group_by(Species) %>% | |
do({do.andrews(as.matrix(select(.,-Species)))}) %>% | |
ggplot(aes(x=AndrewsId,y=AndrewsValue,color=Species,group=interaction(Species,RowId)))+ | |
geom_line(size=1.2) | |
iris %>% | |
group_by(Species) %>% | |
do({do.andrews(as.matrix(select(.,-Species)))}) %>% | |
group_by(Species,AndrewsId) %>% | |
summarize(AndrewsValue=mean(AndrewsValue)) %>% | |
ggplot(aes(x=AndrewsId,y=AndrewsValue,color=Species))+ | |
geom_line(size=1.2) |
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