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yeban/subpart.gff

Last active August 29, 2015 14:02
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subpart.gff
scaffold00002 repeatmasker match 1244186 1244228 274 + . ID=scaffold00002:hit:1026:1.3.0.12;Name=species:R1_DPs|genus:LINE%2FR1;Target=species:R1_DPs|genus:LINE%2FR1 650 780 +
scaffold00002 repeatmasker match_part 1244186 1244228 274 + . ID=scaffold00002:hsp:1026:1.3.0.12;Parent=scaffold00002:hit:1026:1.3.0.12;Target=species:R1_DPs|genus:LINE%2FR1 650 780 +
scaffold00002 repeatmasker match 1261641 1261712 273 + . ID=scaffold00002:hit:1027:1.3.0.12;Name=species:GRANDE1_ZD-int|genus:LTR%2FGypsy;Target=species:GRANDE1_ZD-int|genus:LTR%2FGypsy 11010 11080 +
scaffold00002 repeatmasker match_part 1261641 1261712 273 + . ID=scaffold00002:hsp:1027:1.3.0.12;Parent=scaffold00002:hit:1027:1.3.0.12;Target=species:GRANDE1_ZD-int|genus:LTR%2FGypsy 11010 11080 +
# [...]
scaffold00002 repeatrunner protein_match 1241335 1241652 296 - . ID=scaffold00002:hit:1026:1.3.0.12;Name=gi|538540|pir||A40831;Target=gi|538540|pir||A40831 662 763 +
scaffold00002 repeatrunner match_part 1241335 1241652 296 - . ID=scaffold00002:hsp:1026:1.3.0.12;Parent=scaffold00002:hit:1026:1.3.0.12;Target=gi|538540|pir||A40831 662 763 +
scaffold00002 repeatrunner protein_match 1241717 1242613 952 - . ID=scaffold00002:hit:1027:1.3.0.12;Name=gi|538540|pir||A40831;Target=gi|538540|pir||A40831 429 665 +
scaffold00002 repeatrunner match_part 1241717 1242613 952 - . ID=scaffold00002:hsp:1027:1.3.0.12;Parent=scaffold00002:hit:1027:1.3.0.12;Target=gi|538540|pir||A40831 429 665 +
# [...]
sp|Q39J12|CH602_BURS3 3 118;Gap=M116 F1
scaffold00095 protein2genome match_part 476750 477336 1468 + . ID=scaffold00095:hsp:131626:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 119 313;Gap=R1 M189 D1 M6
scaffold00095 protein2genome match_part 477695 477998 1468 + . ID=scaffold00095:hsp:131627:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 314 414;Gap=M101 F1
scaffold00095 protein2genome match_part 478073 478452 1468 + . ID=scaffold00095:hsp:131628:3.10.0.4;Parent=scaffold00095:hit:43769:3.10.0.4;Target=sp|Q39J12|CH602_BURS3 415 543;Gap=R1 M56 I2 M71
# [...]
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