Yee Mey yeemey
yeemey
/ tidy_breseq.py
Last active
September 2, 2019 20:08
Functions to tidy data from breseq's annotated.gd output file
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import numpy as np | |
| import pandas as pd | |
| import re | |
| def sum_cov(cov_str): | |
| cov_ints = cov_str.split('/') | |
| total_cov = 0 | |
| for cov in cov_ints: | |
| total_cov += int(cov) | |
| return total_cov |