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## warpinfo.rst

      
        
          
            
              
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                satra
                / warpinfo.rst
            
            
              Created
              July 21, 2011 00:50
            
              
                combining bbregister, fsl and ants to warp functional images
              
          
        
      
        
  
      
    ANTS : http://picsl.upenn.edu/ANTS/
c3d : http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Convert3D
export PATH=/software/ANTS-dev:$PATH

c3d_affine_tool -ref [A] -src [B] bbreg.mat -fsl2ras -oitk fsl2antsAffine.txt

WarpImageMultiTransform 3 [B] [C] -R [D] [A_Warp].nii.gz [A_Affine].txt fsl2antsAffine.txt