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chrom testrun
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| $ ./chrom -f /data/yt/GRCh37.ch21.fasta -H /data/yt/GM12878_combined/ -o /work2/yt/scripts/20151105/out/ -k1 -r1000 -c21 -m10000 -M1000000 -n"KR" -e"KR" | |
| fasta file: /data/yt/GRCh37.ch21.fasta | |
| Hi-C data dir: /data/yt/GM12878_combined/ | |
| Output dir: /work2/yt/scripts/20151105/out/ | |
| k: 1 | |
| resolution: 1000 | |
| chromosome: 21 | |
| min distance: 10000 | |
| Max distance: 1000000 | |
| Normalization: KR | |
| Expectation: KR | |
| loaded genome sequence >chr21 (length = 48129895) | |
| Hi-C file /data/yt/GM12878_combined/1kb_resolution_intrachromosomal/chr21/MAPQGE30/chr21_1kb.RAWobserved is open | |
| Writing P to /work2/yt/scripts/20151105/out/res1000.chr21.k1.P.out | |
| Writing q to /work2/yt/scripts/20151105/out/res1000.chr21.k1.q.out | |
| # of data points : 7184076 of 13726326 | |
| computation time : 10.324317 [sec.] | |
| time per data point: 1.437111e-06 [sec. / data point] | |
| $ |
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