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yoavram/lmd2fcs.R

Last active February 2, 2022 19:01
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Convert flow cytometry formats: Gallios Coulter Beckman LMD file to standard FCS file.
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lmd2fcs.R
# install
source("http://bioconductor.org/biocLite.R")
biocLite("flowCore")
# convert
library(tools) # for file_path_sans_ext
library(flowCore)
in.fname <- 'flow123.LMD'
folder <- 'C:\\users\\user\\flow\\'
x <- read.FCS(paste0(folder, in.fname))
summary(x)
out.fname <- paste0(file_path_sans_ext(in.fname), '.fcs')
write.FCS(x, paste0(folder, out.fname))
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