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humanmine model in json
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| { | |
| "model": { | |
| "package": "org.intermine.model.bio", | |
| "classes": { | |
| "ChromosomalDuplication": { | |
| "extends": ["ChromosomeStructureVariation"], | |
| "references": { | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Chromosomal Duplication", | |
| "name": "ChromosomalDuplication", | |
| "count": 0, | |
| "attributes": { | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "GWAS": { | |
| "extends": [], | |
| "references": { | |
| "publication": { | |
| "displayName": "Publication", | |
| "name": "publication", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "collections": { | |
| "results": { | |
| "displayName": "Results", | |
| "name": "results", | |
| "reverseReference": "study", | |
| "referencedType": "GWASResult" | |
| } | |
| }, | |
| "displayName": "GWAS", | |
| "name": "GWAS", | |
| "count": 1305, | |
| "attributes": { | |
| "year": { | |
| "displayName": "Year", | |
| "name": "year", | |
| "type": "java.lang.Integer" | |
| }, | |
| "replicateSample": { | |
| "displayName": "Replicate Sample", | |
| "name": "replicateSample", | |
| "type": "java.lang.String" | |
| }, | |
| "initialSample": { | |
| "displayName": "Initial Sample", | |
| "name": "initialSample", | |
| "type": "java.lang.String" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "firstAuthor": { | |
| "displayName": "First Author", | |
| "name": "firstAuthor", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Enhancer": { | |
| "extends": ["CRM"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "regulatoryRegions", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "TFBindingSites": { | |
| "displayName": "TF Binding Sites", | |
| "name": "TFBindingSites", | |
| "reverseReference": "CRM", | |
| "referencedType": "TFBindingSite" | |
| }, | |
| "synonyms": { | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
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| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
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| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Enhancer", | |
| "name": "Enhancer", | |
| "count": 1994, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "DataSet": { | |
| "extends": [], | |
| "references": { | |
| "publication": { | |
| "displayName": "Publication", | |
| "name": "publication", | |
| "referencedType": "Publication" | |
| }, | |
| "dataSource": { | |
| "displayName": "Data Source", | |
| "name": "dataSource", | |
| "reverseReference": "dataSets", | |
| "referencedType": "DataSource" | |
| } | |
| }, | |
| "collections": { | |
| "bioEntities": { | |
| "displayName": "Bio Entities", | |
| "name": "bioEntities", | |
| "reverseReference": "dataSets", | |
| "referencedType": "BioEntity" | |
| } | |
| }, | |
| "displayName": "Data Set", | |
| "name": "DataSet", | |
| "count": 65, | |
| "attributes": { | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "description": { | |
| "displayName": "Description", | |
| "name": "description", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "version": { | |
| "displayName": "Version", | |
| "name": "version", | |
| "type": "java.lang.String" | |
| }, | |
| "url": { | |
| "displayName": "URL", | |
| "name": "url", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Primer": { | |
| "extends": ["Oligo"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
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| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Primer", | |
| "name": "Primer", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "LncRNA": { | |
| "extends": ["NcRNA"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "exons": { | |
| "displayName": "Exons", | |
| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
| "displayName": "UTRs", | |
| "name": "UTRs", | |
| "reverseReference": "transcripts", | |
| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
| "displayName": "Introns", | |
| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
| "displayName": "CDSs", | |
| "name": "CDSs", | |
| "reverseReference": "transcript", | |
| "referencedType": "CDS" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Lnc RNA", | |
| "name": "LncRNA", | |
| "count": 25715, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "NonAllelicHomologousRecombinationRegion": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
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| "crossReferences": { | |
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| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "regulatoryRegions", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| }, | |
| "CRM": { | |
| "displayName": "CRM", | |
| "name": "CRM", | |
| "reverseReference": "TFBindingSites", | |
| "referencedType": "CRM" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "TF Binding Site", | |
| "name": "TFBindingSite", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": ["im:aspect:Genomics"] | |
| }, | |
| "NucleotideMotif": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
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| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
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| "reverseReference": "participant1", | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Nucleotide Motif", | |
| "name": "NucleotideMotif", | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
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| }, | |
| "length": { | |
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| "name": { | |
| "displayName": "Name", | |
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| "scoreType": { | |
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| }, | |
| "secondaryIdentifier": { | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "IntergenicRegion": { | |
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| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
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| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "adjacentGenes": { | |
| "displayName": "Adjacent Genes", | |
| "name": "adjacentGenes", | |
| "referencedType": "Gene" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
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| "name": "locations", | |
| "reverseReference": "feature", | |
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| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
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| }, | |
| "publications": { | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Intergenic Region", | |
| "name": "IntergenicRegion", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| "name": { | |
| "displayName": "Name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Transcript": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
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| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
| "synonyms": { | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
| "displayName": "UTRs", | |
| "name": "UTRs", | |
| "reverseReference": "transcripts", | |
| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
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| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
| "displayName": "CDSs", | |
| "name": "CDSs", | |
| "reverseReference": "transcript", | |
| "referencedType": "CDS" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Transcript", | |
| "name": "Transcript", | |
| "count": 161141, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": ["im:aspect:Genomics"] | |
| }, | |
| "GCRichPromoterRegion": { | |
| "extends": ["NucleotideMotif"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "GC Rich Promoter Region", | |
| "name": "GCRichPromoterRegion", | |
| "count": 3, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "MicroarrayOligo": { | |
| "extends": ["Oligo"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
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| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
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| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
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| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
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| "referencedType": "OntologyAnnotation" | |
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| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Microarray Oligo", | |
| "name": "MicroarrayOligo", | |
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| "name": "score", | |
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| "displayName": "Score Type", | |
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| } | |
| }, | |
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| }, | |
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| "displayName": "Ontology", | |
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| "referencedType": "Ontology" | |
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| }, | |
| "collections": { | |
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| "displayName": "Synonyms", | |
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| "displayName": "Relations", | |
| "name": "relations", | |
| "referencedType": "OntologyRelation" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "ontologyTerm", | |
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| }, | |
| "parents": { | |
| "displayName": "Parents", | |
| "name": "parents", | |
| "referencedType": "OntologyTerm" | |
| } | |
| }, | |
| "displayName": "Mammalian Phenotype Term", | |
| "name": "MammalianPhenotypeTerm", | |
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| "displayName": "Identifier", | |
| "name": "identifier", | |
| "type": "java.lang.String" | |
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| "displayName": "Obsolete", | |
| "name": "obsolete", | |
| "type": "java.lang.Boolean" | |
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| "displayName": "Name", | |
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| "displayName": "Namespace", | |
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| "displayName": "Description", | |
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| }, | |
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| "displayName": "cDNA Match", | |
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| "id": { | |
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| }, | |
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| "tags": [] | |
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| "name": "gene", | |
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| }, | |
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| "transcripts": { | |
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| "name": "transcripts", | |
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| "referencedType": "Transcript" | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
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| "locatedFeatures": { | |
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| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
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| "ontologyAnnotations": { | |
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| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
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| "overlappingFeatures": { | |
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| "interactions": { | |
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| "name": "interactions", | |
| "reverseReference": "participant1", | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| }, | |
| "displayName": "Three Prime UTR", | |
| "name": "ThreePrimeUTR", | |
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| "name": "score", | |
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| "symbol": { | |
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| "length": { | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
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| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "JGeneSegment": { | |
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| "name": "sequence", | |
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| }, | |
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| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
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| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
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| }, | |
| "chromosome": { | |
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| "name": "chromosome", | |
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| } | |
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| "collections": { | |
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| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| "locations": { | |
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| "name": "locations", | |
| "reverseReference": "feature", | |
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| }, | |
| "childFeatures": { | |
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| "name": "childFeatures", | |
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| }, | |
| "locatedFeatures": { | |
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| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
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| "reverseReference": "entities", | |
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| }, | |
| "displayName": "J Gene Segment", | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Silencer": { | |
| "extends": ["CRM"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "regulatoryRegions", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "TFBindingSites": { | |
| "displayName": "TF Binding Sites", | |
| "name": "TFBindingSites", | |
| "reverseReference": "CRM", | |
| "referencedType": "TFBindingSite" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Silencer", | |
| "name": "Silencer", | |
| "count": 66, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "ChromosomalTranslocation": { | |
| "extends": ["ChromosomeStructureVariation", "SequenceAlteration"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| } | |
| }, | |
| "displayName": "Chromosomal Translocation", | |
| "name": "ChromosomalTranslocation", | |
| "count": 0, | |
| "attributes": { | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Allele": { | |
| "extends": ["SequenceCollection"], | |
| "references": { | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "alleles", | |
| "referencedType": "Gene" | |
| }, | |
| "publication": { | |
| "displayName": "Publication", | |
| "name": "publication", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "highLevelPhenotypeTerms": { | |
| "displayName": "High Level Phenotype Terms", | |
| "name": "highLevelPhenotypeTerms", | |
| "referencedType": "MammalianPhenotypeTerm" | |
| }, | |
| "genotypes": { | |
| "displayName": "Genotypes", | |
| "name": "genotypes", | |
| "reverseReference": "alleles", | |
| "referencedType": "Genotype" | |
| }, | |
| "diseases": { | |
| "displayName": "Diseases", | |
| "name": "diseases", | |
| "reverseReference": "alleles", | |
| "referencedType": "Disease" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Allele", | |
| "name": "Allele", | |
| "count": 463961, | |
| "attributes": { | |
| "reference": { | |
| "displayName": "Reference", | |
| "name": "reference", | |
| "type": "java.lang.String" | |
| }, | |
| "clinicalSignificance": { | |
| "displayName": "Clinical Significance", | |
| "name": "clinicalSignificance", | |
| "type": "java.lang.String" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "alternate": { | |
| "displayName": "Alternate", | |
| "name": "alternate", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "type": { | |
| "displayName": "Type", | |
| "name": "type", | |
| "type": "java.lang.String" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "SequenceVariant": { | |
| "extends": [], | |
| "references": {}, | |
| "collections": { | |
| "genes": { | |
| "displayName": "Genes", | |
| "name": "genes", | |
| "referencedType": "Gene" | |
| } | |
| }, | |
| "displayName": "Sequence Variant", | |
| "name": "SequenceVariant", | |
| "count": 0, | |
| "attributes": { | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Intron": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "transcripts": { | |
| "displayName": "Transcripts", | |
| "name": "transcripts", | |
| "reverseReference": "introns", | |
| "referencedType": "Transcript" | |
| }, | |
| "genes": { | |
| "displayName": "Genes", | |
| "name": "genes", | |
| "reverseReference": "introns", | |
| "referencedType": "Gene" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Intron", | |
| "name": "Intron", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Centromere": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Centromere", | |
| "name": "Centromere", | |
| "count": 24, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
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| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
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| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
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| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
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| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
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| } | |
| }, | |
| "collections": { | |
| "exons": { | |
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| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
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| "name": "UTRs", | |
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| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
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| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| }, | |
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| }, | |
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| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
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| "name": "CDSs", | |
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| "referencedType": "CDS" | |
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| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Antisense RNA", | |
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| "length": { | |
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| "id": { | |
| "displayName": "Id", | |
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| }, | |
| "primaryIdentifier": { | |
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| "isInterface": true, | |
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| "ConservedRegion": { | |
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| }, | |
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| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
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| "chromosome": { | |
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| "displayName": "Conserved Region", | |
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| "id": { | |
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| } | |
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| "tags": [] | |
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| "GOEvidence": { | |
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| "code": { | |
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| } | |
| }, | |
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| "name": "GOEvidence", | |
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| } | |
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| "organism": { | |
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| }, | |
| "gene": { | |
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| "name": "gene", | |
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| }, | |
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| }, | |
| "chromosome": { | |
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| }, | |
| "crossReferences": { | |
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| "ontologyAnnotations": { | |
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| }, | |
| "displayName": "Regulatory Region", | |
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| "id": { | |
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| "referencedType": "BioEntity" | |
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| } | |
| }, | |
| "collections": {}, | |
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| "name": "locatedFeatures", | |
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| }, | |
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| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
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| }, | |
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| "name": "interactions", | |
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| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Long Terminal Repeat", | |
| "name": "LongTerminalRepeat", | |
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| "name": "score", | |
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| }, | |
| "length": { | |
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| "name": "length", | |
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| }, | |
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| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "InteractionExperiment": { | |
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| } | |
| }, | |
| "collections": { | |
| "interactionDetectionMethods": { | |
| "displayName": "Interaction Detection Methods", | |
| "name": "interactionDetectionMethods", | |
| "referencedType": "InteractionTerm" | |
| }, | |
| "comments": { | |
| "displayName": "Comments", | |
| "name": "comments", | |
| "referencedType": "Comment" | |
| }, | |
| "participantIdentificationMethods": { | |
| "displayName": "Participant Identification Methods", | |
| "name": "participantIdentificationMethods", | |
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| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "experiment", | |
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| "name": "GOEvidenceCode", | |
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| }, | |
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| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Locus Control Region", | |
| "name": "LocusControlRegion", | |
| "count": 14, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "GuideRNA": { | |
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| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "exons": { | |
| "displayName": "Exons", | |
| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
| "displayName": "UTRs", | |
| "name": "UTRs", | |
| "reverseReference": "transcripts", | |
| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
| "displayName": "Introns", | |
| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
| "displayName": "CDSs", | |
| "name": "CDSs", | |
| "reverseReference": "transcript", | |
| "referencedType": "CDS" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Guide RNA", | |
| "name": "GuideRNA", | |
| "count": 29, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Microsatellite": { | |
| "extends": ["TandemRepeat"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Microsatellite", | |
| "name": "Microsatellite", | |
| "count": 5, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Organism": { | |
| "extends": [], | |
| "references": {}, | |
| "collections": {}, | |
| "displayName": "Organism", | |
| "name": "Organism", | |
| "count": 8, | |
| "attributes": { | |
| "commonName": { | |
| "displayName": "Common Name", | |
| "name": "commonName", | |
| "type": "java.lang.String" | |
| }, | |
| "species": { | |
| "displayName": "Species", | |
| "name": "species", | |
| "type": "java.lang.String" | |
| }, | |
| "genus": { | |
| "displayName": "Genus", | |
| "name": "genus", | |
| "type": "java.lang.String" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "shortName": { | |
| "displayName": "Short Name", | |
| "name": "shortName", | |
| "type": "java.lang.String" | |
| }, | |
| "taxonId": { | |
| "displayName": "Taxon Id", | |
| "name": "taxonId", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "OntologyTermSynonym": { | |
| "extends": [], | |
| "references": {}, | |
| "collections": {}, | |
| "displayName": "Ontology Term Synonym", | |
| "name": "OntologyTermSynonym", | |
| "count": 173933, | |
| "attributes": { | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "type": { | |
| "displayName": "Type", | |
| "name": "type", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "NucleotideCleavageSite": { | |
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| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Nucleotide Cleavage Site", | |
| "name": "NucleotideCleavageSite", | |
| "count": 4, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "YRNA": { | |
| "extends": ["NcRNA"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "exons": { | |
| "displayName": "Exons", | |
| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
| "displayName": "UTRs", | |
| "name": "UTRs", | |
| "reverseReference": "transcripts", | |
| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
| "displayName": "Introns", | |
| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
| "displayName": "CDSs", | |
| "name": "CDSs", | |
| "reverseReference": "transcript", | |
| "referencedType": "CDS" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Y RNA", | |
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| "displayName": "Ec Numbers", | |
| "name": "ecNumbers", | |
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| "referencedType": "ECNumber" | |
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| "displayName": "Keywords", | |
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| "name": "transcripts", | |
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| "reverseReference": "subject", | |
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| }, | |
| "displayName": "Protein", | |
| "name": "Protein", | |
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| "attributes": { | |
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| "displayName": "Is Fragment", | |
| "name": "isFragment", | |
| "type": "java.lang.Boolean" | |
| }, | |
| "symbol": { | |
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| "name": "uniprotName", | |
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| "primaryAccession": { | |
| "displayName": "Primary Accession", | |
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| }, | |
| "isUniprotCanonical": { | |
| "displayName": "Is UniProt Canonical", | |
| "name": "isUniprotCanonical", | |
| "type": "java.lang.Boolean" | |
| }, | |
| "uniprotAccession": { | |
| "displayName": "UniProt Accession", | |
| "name": "uniprotAccession", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "molecularWeight": { | |
| "displayName": "Molecular Weight", | |
| "name": "molecularWeight", | |
| "type": "java.lang.Double" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| }, | |
| "md5checksum": { | |
| "displayName": "MD5 Checksum", | |
| "name": "md5checksum", | |
| "type": "java.lang.String" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "ecNumber": { | |
| "displayName": "EC Number", | |
| "name": "ecNumber", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| } | |
| }, | |
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| "tags": ["im:aspect:Proteins", "im:preferredBagType"] | |
| }, | |
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| "references": { | |
| "code": { | |
| "displayName": "Code", | |
| "name": "code", | |
| "referencedType": "OntologyAnnotationEvidenceCode" | |
| } | |
| }, | |
| "collections": { | |
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| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Ontology Evidence", | |
| "name": "OntologyEvidence", | |
| "count": 371828, | |
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| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| } | |
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| "isInterface": true, | |
| "tags": [] | |
| }, | |
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| "references": { | |
| "diseaseReference": { | |
| "displayName": "Disease Reference", | |
| "name": "diseaseReference", | |
| "referencedType": "Disease" | |
| }, | |
| "code": { | |
| "displayName": "Code", | |
| "name": "code", | |
| "referencedType": "OntologyAnnotationEvidenceCode" | |
| } | |
| }, | |
| "collections": { | |
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| "name": "with", | |
| "referencedType": "BioEntity" | |
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| } | |
| }, | |
| "displayName": "HPO Evidence", | |
| "name": "HPOEvidence", | |
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| "displayName": "Assigned By", | |
| "name": "assignedBy", | |
| "type": "java.lang.String" | |
| }, | |
| "frequencyModifier": { | |
| "displayName": "Frequency Modifier", | |
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| }, | |
| "source": { | |
| "displayName": "Source", | |
| "name": "source", | |
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| }, | |
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| "displayName": "Sequence", | |
| "name": "sequence", | |
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| }, | |
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| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
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| "name": "organism", | |
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| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
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| } | |
| }, | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
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| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
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| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
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| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
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| "interactions": { | |
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| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Origin Of Replication", | |
| "name": "OriginOfReplication", | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
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| "displayName": "Symbol", | |
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| "displayName": "Length", | |
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| }, | |
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| "displayName": "Located Features", | |
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| "reverseReference": "subject", | |
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| } | |
| }, | |
| "displayName": "Small Molecule", | |
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| }, | |
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| } | |
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| }, | |
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| "collections": {}, | |
| "displayName": "Orthologue Evidence Code", | |
| "name": "OrthologueEvidenceCode", | |
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| "abbreviation": { | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
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| "name": "subject", | |
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| }, | |
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| } | |
| }, | |
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| } | |
| }, | |
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| }, | |
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| }, | |
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| }, | |
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| }, | |
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| }, | |
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| } | |
| }, | |
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| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
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| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Mobile Genetic Element", | |
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| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| "name": { | |
| "displayName": "Name", | |
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| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "BiologicalRegion": { | |
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| }, | |
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| "displayName": "Organism", | |
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| }, | |
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| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
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| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
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| } | |
| }, | |
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| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
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| "referencedType": "Synonym" | |
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| "displayName": "Data Sets", | |
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| "name": "locations", | |
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| }, | |
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| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
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| "crossReferences": { | |
| "displayName": "Cross References", | |
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| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
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| "displayName": "Overlapping Features", | |
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| "name": "interactions", | |
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| } | |
| }, | |
| "displayName": "Biological Region", | |
| "name": "BiologicalRegion", | |
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| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
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| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "GeneFlankingRegion": { | |
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| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
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| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
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| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "flankingRegions", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
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| "displayName": "Synonyms", | |
| "name": "synonyms", | |
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| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
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| }, | |
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| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
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| "displayName": "Child Features", | |
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| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
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| } | |
| }, | |
| "displayName": "Gene Flanking Region", | |
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| "displayName": "Symbol", | |
| "name": "symbol", | |
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| }, | |
| "distance": { | |
| "displayName": "Distance", | |
| "name": "distance", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
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| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| }, | |
| "includeGene": { | |
| "displayName": "Include Gene", | |
| "name": "includeGene", | |
| "type": "java.lang.Boolean" | |
| }, | |
| "direction": { | |
| "displayName": "Direction", | |
| "name": "direction", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
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| "displayName": "Sequence", | |
| "name": "sequence", | |
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| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
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| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
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| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "TFBindingSites": { | |
| "displayName": "TF Binding Sites", | |
| "name": "TFBindingSites", | |
| "reverseReference": "CRM", | |
| "referencedType": "TFBindingSite" | |
| }, | |
| "synonyms": { | |
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| "name": "synonyms", | |
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| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
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| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
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| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
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| }, | |
| "interactions": { | |
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| "name": "interactions", | |
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| }, | |
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| "name": "publications", | |
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| } | |
| }, | |
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| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
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| }, | |
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| "displayName": "Sequence", | |
| "name": "sequence", | |
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| }, | |
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| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
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| "displayName": "Gene", | |
| "name": "gene", | |
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| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
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| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Insulator", | |
| "name": "Insulator", | |
| "count": 9, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "ReplicationStartSite": { | |
| "extends": ["OriginOfReplication"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
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| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
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| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
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| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Replication Start Site", | |
| "name": "ReplicationStartSite", | |
| "count": 3, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
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| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
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| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "RNASeqResult": { | |
| "extends": [], | |
| "references": { | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "rnaSeqResults", | |
| "referencedType": "Gene" | |
| } | |
| }, | |
| "collections": { | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "referencedType": "DataSet" | |
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| }, | |
| "displayName": "RNA Seq Result", | |
| "name": "RNASeqResult", | |
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| "tissue": { | |
| "displayName": "Tissue", | |
| "name": "tissue", | |
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| "expressionType": { | |
| "displayName": "Expression Type", | |
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| "expressionScore": { | |
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| "isInterface": true, | |
| "tags": [] | |
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| "collections": {}, | |
| "displayName": "Ontology", | |
| "name": "Ontology", | |
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| "name": { | |
| "displayName": "Name", | |
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| "id": { | |
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| "url": { | |
| "displayName": "URL", | |
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| }, | |
| "isInterface": true, | |
| "tags": [] | |
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| "HPOAnnotation": { | |
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| "references": { | |
| "subject": { | |
| "displayName": "Subject", | |
| "name": "subject", | |
| "reverseReference": "ontologyAnnotations", | |
| "referencedType": "Annotatable" | |
| }, | |
| "hpoTerm": { | |
| "displayName": "Hpo Term", | |
| "name": "hpoTerm", | |
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| "referencedType": "HPOTerm" | |
| }, | |
| "ontologyTerm": { | |
| "displayName": "Ontology Term", | |
| "name": "ontologyTerm", | |
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| "referencedType": "OntologyTerm" | |
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| }, | |
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| "displayName": "Evidence", | |
| "name": "evidence", | |
| "referencedType": "OntologyEvidence" | |
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| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "referencedType": "DataSet" | |
| }, | |
| "evidences": { | |
| "displayName": "Evidences", | |
| "name": "evidences", | |
| "referencedType": "HPOEvidence" | |
| } | |
| }, | |
| "displayName": "HPO Annotation", | |
| "name": "HPOAnnotation", | |
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| "qualifier": { | |
| "displayName": "Qualifier", | |
| "name": "qualifier", | |
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| "id": { | |
| "displayName": "Id", | |
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| "displayName": "Tissue Group", | |
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| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| "id": { | |
| "displayName": "Id", | |
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| "isInterface": true, | |
| "tags": [] | |
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| "DGeneSegment": { | |
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| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
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| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
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| "collections": { | |
| "synonyms": { | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
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| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
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| "childFeatures": { | |
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| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
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| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| "ontologyAnnotations": { | |
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| "name": "ontologyAnnotations", | |
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| }, | |
| "displayName": "D Gene Segment", | |
| "name": "DGeneSegment", | |
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| "name": "score", | |
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| "symbol": { | |
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| "length": { | |
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| "name": { | |
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| "id": { | |
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| "isInterface": true, | |
| "tags": [] | |
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| "TelomeraseRNA": { | |
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| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
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| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
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| "organism": { | |
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| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
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| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
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| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
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| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
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| "chromosome": { | |
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| "name": "chromosome", | |
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| } | |
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| "name": "exons", | |
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| "referencedType": "Exon" | |
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| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
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| "name": "UTRs", | |
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| "referencedType": "UTR" | |
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| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
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| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
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| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| "name": "locations", | |
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| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
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| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
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| "CDSs": { | |
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| "name": "CDSs", | |
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| "referencedType": "CDS" | |
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| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Telomerase RNA", | |
| "name": "TelomeraseRNA", | |
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| "name": "score", | |
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| "id": { | |
| "displayName": "Id", | |
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| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
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| "isInterface": true, | |
| "tags": [] | |
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| "ReplicationRegulatoryRegion": { | |
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| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
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| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| "organism": { | |
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| "name": "organism", | |
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| }, | |
| "gene": { | |
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| "name": "gene", | |
| "reverseReference": "regulatoryRegions", | |
| "referencedType": "Gene" | |
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| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
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| "chromosome": { | |
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| "name": "chromosome", | |
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| "name": "synonyms", | |
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| "referencedType": "Synonym" | |
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| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
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| "name": "childFeatures", | |
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| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
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| "overlappingFeatures": { | |
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| "name": "overlappingFeatures", | |
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| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Replication Regulatory Region", | |
| "name": "ReplicationRegulatoryRegion", | |
| "count": 12, | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
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| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "SOTerm": { | |
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| "references": { | |
| "ontology": { | |
| "displayName": "Ontology", | |
| "name": "ontology", | |
| "referencedType": "Ontology" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "referencedType": "OntologyTermSynonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "referencedType": "DataSet" | |
| }, | |
| "relations": { | |
| "displayName": "Relations", | |
| "name": "relations", | |
| "referencedType": "OntologyRelation" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "referencedType": "OntologyTerm" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "ontologyTerm", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "parents": { | |
| "displayName": "Parents", | |
| "name": "parents", | |
| "referencedType": "OntologyTerm" | |
| } | |
| }, | |
| "displayName": "SO Term", | |
| "name": "SOTerm", | |
| "count": 2219, | |
| "attributes": { | |
| "identifier": { | |
| "displayName": "Identifier", | |
| "name": "identifier", | |
| "type": "java.lang.String" | |
| }, | |
| "obsolete": { | |
| "displayName": "Obsolete", | |
| "name": "obsolete", | |
| "type": "java.lang.Boolean" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "namespace": { | |
| "displayName": "Namespace", | |
| "name": "namespace", | |
| "type": "java.lang.String" | |
| }, | |
| "description": { | |
| "displayName": "Description", | |
| "name": "description", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "ChromosomeBand": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
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| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
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| "reverseReference": "participant1", | |
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| }, | |
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| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Chromosome Band", | |
| "name": "ChromosomeBand", | |
| "count": 0, | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": ["im:aspect:Genomics"] | |
| }, | |
| "DirectRepeat": { | |
| "extends": ["RepeatRegion"], | |
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| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
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| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
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| "displayName": "Synonyms", | |
| "name": "synonyms", | |
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| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
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| }, | |
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| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Direct Repeat", | |
| "name": "DirectRepeat", | |
| "count": 14, | |
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| "name": "score", | |
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| }, | |
| "symbol": { | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
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| "name": { | |
| "displayName": "Name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
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| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
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| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "TransposableElementInsertionSite": { | |
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| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
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| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
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| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| }, | |
| "childFeatures": { | |
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| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
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| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
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| "referencedType": "OntologyAnnotation" | |
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| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
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| } | |
| }, | |
| "displayName": "Transposable Element Insertion Site", | |
| "name": "TransposableElementInsertionSite", | |
| "count": 0, | |
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| }, | |
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| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "GOAnnotation": { | |
| "extends": ["OntologyAnnotation"], | |
| "references": { | |
| "subject": { | |
| "displayName": "Subject", | |
| "name": "subject", | |
| "reverseReference": "ontologyAnnotations", | |
| "referencedType": "Annotatable" | |
| }, | |
| "ontologyTerm": { | |
| "displayName": "Ontology Term", | |
| "name": "ontologyTerm", | |
| "reverseReference": "ontologyAnnotations", | |
| "referencedType": "OntologyTerm" | |
| } | |
| }, | |
| "collections": { | |
| "evidence": { | |
| "displayName": "Evidence", | |
| "name": "evidence", | |
| "referencedType": "OntologyEvidence" | |
| }, | |
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| "displayName": "Data Sets", | |
| "name": "dataSets", | |
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| } | |
| }, | |
| "displayName": "GO Annotation", | |
| "name": "GOAnnotation", | |
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| "displayName": "Annotation Extension", | |
| "name": "annotationExtension", | |
| "type": "java.lang.String" | |
| }, | |
| "qualifier": { | |
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| "name": "qualifier", | |
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| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Source": { | |
| "extends": [], | |
| "references": {}, | |
| "collections": {}, | |
| "displayName": "Source", | |
| "name": "Source", | |
| "count": 0, | |
| "attributes": { | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| "id": { | |
| "displayName": "Id", | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Match": { | |
| "extends": ["Region"], | |
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| "sequence": { | |
| "displayName": "Sequence", | |
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| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
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| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
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| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
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| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Match", | |
| "name": "Match", | |
| "count": 23333, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
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| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
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| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
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| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
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| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Exon": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "exons", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "transcripts": { | |
| "displayName": "Transcripts", | |
| "name": "transcripts", | |
| "reverseReference": "exons", | |
| "referencedType": "Transcript" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
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| "reverseReference": "subject", | |
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| }, | |
| "displayName": "RNase P RNA", | |
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| "name": "ESTs", | |
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| "reverseReference": "subject", | |
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| }, | |
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| } | |
| }, | |
| "displayName": "Overlapping EST Set", | |
| "name": "OverlappingESTSet", | |
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| }, | |
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| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
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| } | |
| }, | |
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| "synonyms": { | |
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| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
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| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
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| }, | |
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| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
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| "name": "publications", | |
| "reverseReference": "entities", | |
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| } | |
| }, | |
| "displayName": "Transcriptional Cis Regulatory Region", | |
| "name": "TranscriptionalCisRegulatoryRegion", | |
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| "name": "score", | |
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| "Chromosome": { | |
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| "displayName": "Sequence", | |
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| "displayName": "Sequence Ontology Term", | |
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| "displayName": "Chromosome Location", | |
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| "referencedType": "Location" | |
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| "reverseReference": "subject", | |
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| }, | |
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| "name": "Chromosome", | |
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| "displayName": "Symbol", | |
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| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
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| "name": { | |
| "displayName": "Name", | |
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| "id": { | |
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| } | |
| }, | |
| "isInterface": true, | |
| "tags": ["im:aspect:Genomics"] | |
| }, | |
| "NcRNA": { | |
| "extends": ["Transcript"], | |
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| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
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| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
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| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
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| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
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| "name": "chromosome", | |
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| } | |
| }, | |
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| "name": "exons", | |
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| "referencedType": "Exon" | |
| }, | |
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| "referencedType": "Location" | |
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| "reverseReference": "subject", | |
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| "CDSs": { | |
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| }, | |
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| }, | |
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| "reverseReference": "subject", | |
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| }, | |
| "ontologyAnnotations": { | |
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| } | |
| }, | |
| "displayName": "D Loop", | |
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| }, | |
| "chromosome": { | |
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| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Matrix Attachment Site", | |
| "name": "MatrixAttachmentSite", | |
| "count": 15, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "SnRNA": { | |
| "extends": ["NcRNA"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "gene": { | |
| "displayName": "Gene", | |
| "name": "gene", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Gene" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "protein": { | |
| "displayName": "Protein", | |
| "name": "protein", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Protein" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "exons": { | |
| "displayName": "Exons", | |
| "name": "exons", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Exon" | |
| }, | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "UTRs": { | |
| "displayName": "UTRs", | |
| "name": "UTRs", | |
| "reverseReference": "transcripts", | |
| "referencedType": "UTR" | |
| }, | |
| "introns": { | |
| "displayName": "Introns", | |
| "name": "introns", | |
| "reverseReference": "transcripts", | |
| "referencedType": "Intron" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "CDSs": { | |
| "displayName": "CDSs", | |
| "name": "CDSs", | |
| "reverseReference": "transcript", | |
| "referencedType": "CDS" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "snRNA", | |
| "name": "SnRNA", | |
| "count": 63, | |
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| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "PointMutation": { | |
| "extends": ["Substitution"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Point Mutation", | |
| "name": "PointMutation", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "MeioticRecombinationRegion": { | |
| "extends": ["BiologicalRegion"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Meiotic Recombination Region", | |
| "name": "MeioticRecombinationRegion", | |
| "count": 258, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "PCRProduct": { | |
| "extends": ["Region"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "PCR Product", | |
| "name": "PCRProduct", | |
| "count": 0, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "CAATSignal": { | |
| "extends": ["NucleotideMotif"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
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| "referencedType": "Location" | |
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| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
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| "referencedType": "OntologyAnnotation" | |
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| "reverseReference": "entities", | |
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| "displayName": "CAAT Signal", | |
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| "ontologyAnnotations": { | |
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| "parents": { | |
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| "referencedType": "OntologyTerm" | |
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| }, | |
| "displayName": "Interaction Term", | |
| "name": "InteractionTerm", | |
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| "name": "identifier", | |
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| "displayName": "DNAseI Hypersensitive Site", | |
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| "SequenceComparison": { | |
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| } | |
| }, | |
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| "name": "ChromosomalInversion", | |
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| }, | |
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| }, | |
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| "displayName": "Risk Allele Freq In Controls", | |
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| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "associatedVariantRiskAllele": { | |
| "displayName": "Associated Variant Risk Allele", | |
| "name": "associatedVariantRiskAllele", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Interactor": { | |
| "extends": [], | |
| "references": { | |
| "participant": { | |
| "displayName": "Participant", | |
| "name": "participant", | |
| "referencedType": "BioEntity" | |
| } | |
| }, | |
| "collections": { | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "referencedType": "Interaction" | |
| } | |
| }, | |
| "displayName": "Interactor", | |
| "name": "Interactor", | |
| "count": 2441, | |
| "attributes": { | |
| "stoichiometry": { | |
| "displayName": "Stoichiometry", | |
| "name": "stoichiometry", | |
| "type": "java.lang.Integer" | |
| }, | |
| "annotations": { | |
| "displayName": "Annotations", | |
| "name": "annotations", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "type": { | |
| "displayName": "Type", | |
| "name": "type", | |
| "type": "java.lang.String" | |
| }, | |
| "biologicalRole": { | |
| "displayName": "Biological Role", | |
| "name": "biologicalRole", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "CAGECluster": { | |
| "extends": ["Region"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "CAGE Cluster", | |
| "name": "CAGECluster", | |
| "count": 93, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "StemLoop": { | |
| "extends": ["SequenceSecondaryStructure"], | |
| "references": { | |
| "sequence": { | |
| "displayName": "Sequence", | |
| "name": "sequence", | |
| "referencedType": "Sequence" | |
| }, | |
| "sequenceOntologyTerm": { | |
| "displayName": "Sequence Ontology Term", | |
| "name": "sequenceOntologyTerm", | |
| "referencedType": "SOTerm" | |
| }, | |
| "organism": { | |
| "displayName": "Organism", | |
| "name": "organism", | |
| "referencedType": "Organism" | |
| }, | |
| "chromosomeLocation": { | |
| "displayName": "Chromosome Location", | |
| "name": "chromosomeLocation", | |
| "referencedType": "Location" | |
| }, | |
| "chromosome": { | |
| "displayName": "Chromosome", | |
| "name": "chromosome", | |
| "referencedType": "Chromosome" | |
| } | |
| }, | |
| "collections": { | |
| "synonyms": { | |
| "displayName": "Synonyms", | |
| "name": "synonyms", | |
| "reverseReference": "subject", | |
| "referencedType": "Synonym" | |
| }, | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "reverseReference": "bioEntities", | |
| "referencedType": "DataSet" | |
| }, | |
| "locations": { | |
| "displayName": "Locations", | |
| "name": "locations", | |
| "reverseReference": "feature", | |
| "referencedType": "Location" | |
| }, | |
| "childFeatures": { | |
| "displayName": "Child Features", | |
| "name": "childFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "locatedFeatures": { | |
| "displayName": "Located Features", | |
| "name": "locatedFeatures", | |
| "reverseReference": "locatedOn", | |
| "referencedType": "Location" | |
| }, | |
| "crossReferences": { | |
| "displayName": "Cross References", | |
| "name": "crossReferences", | |
| "reverseReference": "subject", | |
| "referencedType": "CrossReference" | |
| }, | |
| "ontologyAnnotations": { | |
| "displayName": "Ontology Annotations", | |
| "name": "ontologyAnnotations", | |
| "reverseReference": "subject", | |
| "referencedType": "OntologyAnnotation" | |
| }, | |
| "overlappingFeatures": { | |
| "displayName": "Overlapping Features", | |
| "name": "overlappingFeatures", | |
| "referencedType": "SequenceFeature" | |
| }, | |
| "interactions": { | |
| "displayName": "Interactions", | |
| "name": "interactions", | |
| "reverseReference": "participant1", | |
| "referencedType": "Interaction" | |
| }, | |
| "publications": { | |
| "displayName": "Publications", | |
| "name": "publications", | |
| "reverseReference": "entities", | |
| "referencedType": "Publication" | |
| } | |
| }, | |
| "displayName": "Stem Loop", | |
| "name": "StemLoop", | |
| "count": 3, | |
| "attributes": { | |
| "score": { | |
| "displayName": "Score", | |
| "name": "score", | |
| "type": "java.lang.Double" | |
| }, | |
| "symbol": { | |
| "displayName": "Symbol", | |
| "name": "symbol", | |
| "type": "java.lang.String" | |
| }, | |
| "length": { | |
| "displayName": "Length", | |
| "name": "length", | |
| "type": "java.lang.Integer" | |
| }, | |
| "name": { | |
| "displayName": "Name", | |
| "name": "name", | |
| "type": "java.lang.String" | |
| }, | |
| "scoreType": { | |
| "displayName": "Score Type", | |
| "name": "scoreType", | |
| "type": "java.lang.String" | |
| }, | |
| "secondaryIdentifier": { | |
| "displayName": "Secondary Identifier", | |
| "name": "secondaryIdentifier", | |
| "type": "java.lang.String" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| }, | |
| "primaryIdentifier": { | |
| "displayName": "Primary Identifier", | |
| "name": "primaryIdentifier", | |
| "type": "java.lang.String" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| }, | |
| "Location": { | |
| "extends": [], | |
| "references": { | |
| "locatedOn": { | |
| "displayName": "Located On", | |
| "name": "locatedOn", | |
| "reverseReference": "locatedFeatures", | |
| "referencedType": "BioEntity" | |
| }, | |
| "feature": { | |
| "displayName": "Feature", | |
| "name": "feature", | |
| "reverseReference": "locations", | |
| "referencedType": "BioEntity" | |
| } | |
| }, | |
| "collections": { | |
| "dataSets": { | |
| "displayName": "Data Sets", | |
| "name": "dataSets", | |
| "referencedType": "DataSet" | |
| } | |
| }, | |
| "displayName": "Location", | |
| "name": "Location", | |
| "count": 4301404, | |
| "attributes": { | |
| "strand": { | |
| "displayName": "Strand", | |
| "name": "strand", | |
| "type": "java.lang.String" | |
| }, | |
| "start": { | |
| "displayName": "Start", | |
| "name": "start", | |
| "type": "java.lang.Integer" | |
| }, | |
| "end": { | |
| "displayName": "End", | |
| "name": "end", | |
| "type": "java.lang.Integer" | |
| }, | |
| "id": { | |
| "displayName": "Id", | |
| "name": "id", | |
| "type": "java.lang.Integer" | |
| } | |
| }, | |
| "isInterface": true, | |
| "tags": [] | |
| } | |
| }, | |
| "name": "genomic", | |
| "version": 0 | |
| }, | |
| "executionTime": "2018.08.01 11:27::57", | |
| "wasSuccessful": true, | |
| "error": null, | |
| "statusCode": 200 | |
| } |
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