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pandas example for GEO
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"%matplotlib inline\n",
"import numpy as np\n",
"import pandas as pd\n",
"import matplotlib.pyplot as plt"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"!Series_title\t\"Allelic Differences Account for Gene Expression Differences Among Population.\"\r\n",
"!Series_geo_accession\t\"GSE5859\"\r\n",
"!Series_status\t\"Public on Jan 07 2007\"\r\n",
"!Series_submission_date\t\"Sep 18 2006\"\r\n",
"!Series_last_update_date\t\"Jul 08 2016\"\r\n",
"!Series_pubmed_id\t\"17206142\"\r\n",
"!Series_summary\t\"Expression level of genes in lymphoblasts from individuals in three HapMap populations (CEU, CHB, JPT) were compared. More than 1,000 genes were found to be significantly different (Pc<0.05) in mean expression level between the CEU and CHB+JPT samples.\"\r\n",
"!Series_summary\t\"Keywords: Comparison of Gene Expression Profiles from Lymphoblastoid cells\"\r\n",
"!Series_overall_design\t\"Gene expression analysis using Affymetrix Human Focus arrays; comparison of expression levels of genes by t-test.\"\r\n",
"!Series_type\t\"Expression profiling by array\"\r\n",
"!Series_contributor\t\"Richard,S,Spielman\"\r\n",
"!Series_contributor\t\"Laurel,A,Bastone\"\r\n",
"!Series_contributor\t\"Joshua,B,Burdick\"\r\n",
"!Series_contributor\t\"Michael,P,Morley\"\r\n",
"!Series_contributor\t\"Warren,J,Ewens\"\r\n",
"!Series_contributor\t\"Vivian,G,Cheung\"\r\n",
"!Series_sample_id\t\"GSM25349 GSM25350 GSM25356 GSM25357 GSM25358 GSM25359 GSM25360 GSM25361 GSM25377 GSM25378 GSM25385 GSM25386 GSM25399 GSM25400 GSM25401 GSM25402 GSM25409 GSM25410 GSM25426 GSM25427 GSM25479 GSM25480 GSM25481 GSM25482 GSM25524 GSM25525 GSM25526 GSM25527 GSM25528 GSM25529 GSM25530 GSM25531 GSM25540 GSM25541 GSM25542 GSM25543 GSM25548 GSM25549 GSM25550 GSM25551 GSM25552 GSM25553 GSM25561 GSM25562 GSM25563 GSM25564 GSM25565 GSM25566 GSM25568 GSM25569 GSM25570 GSM25571 GSM25578 GSM25579 GSM25580 GSM25581 GSM25624 GSM25625 GSM25626 GSM25627 GSM25628 GSM25629 GSM25630 GSM25631 GSM25632 GSM25633 GSM25634 GSM25635 GSM25656 GSM25657 GSM25658 GSM25659 GSM25660 GSM25661 GSM25662 GSM25663 GSM25680 GSM25681 GSM25682 GSM25683 GSM25684 GSM25685 GSM25686 GSM25687 GSM48650 GSM48651 GSM48652 GSM48653 GSM48654 GSM48655 GSM48656 GSM48657 GSM48658 GSM48660 GSM48661 GSM48662 GSM48663 GSM48664 GSM48665 GSM136441 GSM136442 GSM136443 GSM136444 GSM136445 GSM136506 GSM136507 GSM136508 GSM136509 GSM136510 GSM136514 GSM136515 GSM136516 GSM136517 GSM136518 GSM136520 GSM136521 GSM136522 GSM136523 GSM136524 GSM136528 GSM136529 GSM136530 GSM136531 GSM136532 GSM136534 GSM136535 GSM136536 GSM136537 GSM136538 GSM136539 GSM136540 GSM136541 GSM136542 GSM136543 GSM136544 GSM136545 GSM136546 GSM136547 GSM136548 GSM136549 GSM136550 GSM136551 GSM136552 GSM136553 GSM136555 GSM136556 GSM136557 GSM136558 GSM136559 GSM136563 GSM136564 GSM136565 GSM136566 GSM136567 GSM136568 GSM136569 GSM136570 GSM136571 GSM136572 GSM136573 GSM136574 GSM136575 GSM136576 GSM136577 GSM136658 GSM136659 GSM136660 GSM136661 GSM136662 GSM136663 GSM136664 GSM136665 GSM136666 GSM136667 GSM136668 GSM136669 GSM136670 GSM136671 GSM136672 GSM136673 GSM136674 GSM136675 GSM136676 GSM136677 GSM136705 GSM136706 GSM136707 GSM136708 GSM136709 GSM136710 GSM136711 GSM136712 GSM136713 GSM136714 GSM136715 GSM136716 GSM136717 GSM136718 GSM136719 GSM136720 GSM136721 GSM136722 GSM136723 GSM136724 GSM136725 GSM136726 GSM136727 GSM136729 \"\r\n",
"!Series_contact_name\t\"Michael,Patrick,Morley\"\r\n",
"!Series_contact_email\t\"mmorley@mail.med.upenn.edu\"\r\n",
"!Series_contact_phone\t\"215-898-2026\"\r\n",
"!Series_contact_department\t\"Penn Cardiovascular Institute\"\r\n",
"!Series_contact_institute\t\"Perelman School of Medicine at the University of Pennsylvania\"\r\n",
"!Series_contact_address\t\"3400 Civic Center Blvd, Bldg 421\"\r\n",
"!Series_contact_city\t\"Philadelphia\"\r\n",
"!Series_contact_state\t\"PA\"\r\n",
"!Series_contact_zip/postal_code\t\"19104\"\r\n",
"!Series_contact_country\t\"USA\"\r\n",
"!Series_supplementary_file\t\"ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/series/GSE5859/GSE5859_RAW.tar\"\r\n",
"!Series_platform_id\t\"GPL201\"\r\n",
"!Series_platform_taxid\t\"9606\"\r\n",
"!Series_sample_taxid\t\"9606\"\r\n",
"!Series_relation\t\"BioProject: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA97265\"\r\n",
"\r\n",
"!Sample_title\t\"GM06985_rep1\"\t\"GM06985_rep2\"\t\"GM06993_rep1\"\t\"GM06993_rep2\"\t\"GM06994_rep1\"\t\"GM06994_rep2\"\t\"GM07000_rep1\"\t\"GM07000_rep2\"\t\"GM07022_rep1\"\t\"GM07022_rep2\"\t\"GM07034_rep1\"\t\"GM07034_rep2\"\t\"GM07055_rep1\"\t\"GM07055_rep2\"\t\"GM07056_rep1\"\t\"GM07056_rep2\"\t\"GM07345_rep1\"\t\"GM07345_rep2\"\t\"GM07357_rep1\"\t\"GM07357_rep2\"\t\"GM11881_rep1\"\t\"GM11881_rep2\"\t\"GM11882_rep1\"\t\"GM11882_rep2\"\t\"GM11992_rep1\"\t\"GM11992_rep2\"\t\"GM11993_rep1\"\t\"GM11993_rep2\"\t\"GM11994_rep1\"\t\"GM11994_rep2\"\t\"GM11995_rep1\"\t\"GM11995_rep2\"\t\"GM12043_rep1\"\t\"GM12043_rep2\"\t\"GM12044_rep1\"\t\"GM12044_rep2\"\t\"GM12144_rep1\"\t\"GM12144_rep2\"\t\"GM12145_rep1\"\t\"GM12145_rep2\"\t\"GM12146_rep1\"\t\"GM12146_rep2\"\t\"GM12154_rep1\"\t\"GM12154_rep2\"\t\"GM12155_rep1\"\t\"GM12155_rep2\"\t\"GM12156_rep1\"\t\"GM12156_rep2\"\t\"GM12236_rep1\"\t\"GM12236_rep2\"\t\"GM12239_rep1\"\t\"GM12239_rep2\"\t\"GM12248_rep1\"\t\"GM12248_rep2\"\t\"GM12249_rep1\"\t\"GM12249_rep2\"\t\"GM12750_rep1\"\t\"GM12750_rep2\"\t\"GM12751_rep1\"\t\"GM12751_rep2\"\t\"GM12760_rep1\"\t\"GM12760_rep2\"\t\"GM12761_rep1\"\t\"GM12761_rep2\"\t\"GM12762_rep1\"\t\"GM12762_rep2\"\t\"GM12763_rep1\"\t\"GM12763_rep2\"\t\"GM12812_rep1\"\t\"GM12812_rep2\"\t\"GM12813_rep1\"\t\"GM12813_rep2\"\t\"GM12814_rep1\"\t\"GM12814_rep2\"\t\"GM12815_rep1\"\t\"GM12815_rep2\"\t\"GM12872_rep1\"\t\"GM12872_rep2\"\t\"GM12873_rep1\"\t\"GM12873_rep2\"\t\"GM12874_rep1\"\t\"GM12874_rep2\"\t\"GM12875_rep1\"\t\"GM12875_rep2\"\t\"GM11829_rep1\"\t\"GM11830_rep1\"\t\"GM11831_rep1\"\t\"GM11832_rep1\"\t\"GM11839_rep1\"\t\"GM12003_rep1\"\t\"GM12004_rep1\"\t\"GM12005_rep1\"\t\"GM12006_rep1\"\t\"GM12057_rep1\"\t\"GM12234_rep1\"\t\"GM12716_rep1\"\t\"GM12717_rep1\"\t\"GM12891_rep1\"\t\"GM12892_rep1\"\t\"GM18956\"\t\"GM18942\"\t\"GM18944\"\t\"GM18945\"\t\"GM18949\"\t\"GM18952\"\t\"GM18943\"\t\"GM18947\"\t\"GM18948\"\t\"GM18953\"\t\"GM18961\"\t\"GM18970\"\t\"GM18540\"\t\"GM18542\"\t\"GM18550\"\t\"GM18552\"\t\"GM18555\"\t\"GM18959\"\t\"GM18960\"\t\"GM18965\"\t\"GM18966\"\t\"GM18967\"\t\"GM18968\"\t\"GM18971\"\t\"GM18972\"\t\"GM18973\"\t\"GM18974\"\t\"GM18975\"\t\"GM18976\"\t\"GM18978\"\t\"GM18980\"\t\"GM18969\"\t\"GM18987\"\t\"GM18990\"\t\"GM18991\"\t\"GM18992\"\t\"GM18995\"\t\"GM19005\"\t\"GM18524\"\t\"GM18529\"\t\"GM18532\"\t\"GM18547\"\t\"GM18561\"\t\"GM18994\"\t\"GM18526\"\t\"GM18537\"\t\"GM18593\"\t\"GM18603\"\t\"GM18605\"\t\"GM18545\"\t\"GM18558\"\t\"GM18563\"\t\"GM18566\"\t\"GM18577\"\t\"GM18582\"\t\"GM18592\"\t\"GM18999\"\t\"GM19000\"\t\"GM19003\"\t\"GM19007\"\t\"GM18573\"\t\"GM18579\"\t\"GM18576\"\t\"GM18964\"\t\"GM18981\"\t\"GM18622\"\t\"GM18594\"\t\"GM18611\"\t\"GM18564\"\t\"GM18612\"\t\"GM18621\"\t\"GM18623\"\t\"GM18624\"\t\"GM18632\"\t\"GM18635\"\t\"GM18636\"\t\"GM18637\"\t\"GM18620\"\t\"GM18562\"\t\"GM18570\"\t\"GM18608\"\t\"GM17733\"\t\"GM17734\"\t\"GM17735\"\t\"GM17736\"\t\"GM17737\"\t\"GM17738\"\t\"GM17739\"\t\"GM17740\"\t\"GM17742\"\t\"GM17741\"\t\"GM17743\"\t\"GM17744\"\t\"GM17745\"\t\"GM17746\"\t\"GM17747\"\t\"GM17749\"\t\"GM17752\"\t\"GM17753\"\t\"GM17754\"\t\"GM17755\"\t\"GM17756\"\t\"GM17757\"\t\"GM17759\"\t\"GM17761\"\t\"GM11840\"\t\"GM12056\"\t\"GM12264\"\t\"GM18940\"\r\n",
"!Sample_geo_accession\t\"GSM25349\"\t\"GSM25350\"\t\"GSM25356\"\t\"GSM25357\"\t\"GSM25358\"\t\"GSM25359\"\t\"GSM25360\"\t\"GSM25361\"\t\"GSM25377\"\t\"GSM25378\"\t\"GSM25385\"\t\"GSM25386\"\t\"GSM25399\"\t\"GSM25400\"\t\"GSM25401\"\t\"GSM25402\"\t\"GSM25409\"\t\"GSM25410\"\t\"GSM25426\"\t\"GSM25427\"\t\"GSM25479\"\t\"GSM25480\"\t\"GSM25481\"\t\"GSM25482\"\t\"GSM25524\"\t\"GSM25525\"\t\"GSM25526\"\t\"GSM25527\"\t\"GSM25528\"\t\"GSM25529\"\t\"GSM25530\"\t\"GSM25531\"\t\"GSM25540\"\t\"GSM25541\"\t\"GSM25542\"\t\"GSM25543\"\t\"GSM25548\"\t\"GSM25549\"\t\"GSM25550\"\t\"GSM25551\"\t\"GSM25552\"\t\"GSM25553\"\t\"GSM25561\"\t\"GSM25562\"\t\"GSM25563\"\t\"GSM25564\"\t\"GSM25565\"\t\"GSM25566\"\t\"GSM25568\"\t\"GSM25569\"\t\"GSM25570\"\t\"GSM25571\"\t\"GSM25578\"\t\"GSM25579\"\t\"GSM25580\"\t\"GSM25581\"\t\"GSM25624\"\t\"GSM25625\"\t\"GSM25626\"\t\"GSM25627\"\t\"GSM25628\"\t\"GSM25629\"\t\"GSM25630\"\t\"GSM25631\"\t\"GSM25632\"\t\"GSM25633\"\t\"GSM25634\"\t\"GSM25635\"\t\"GSM25656\"\t\"GSM25657\"\t\"GSM25658\"\t\"GSM25659\"\t\"GSM25660\"\t\"GSM25661\"\t\"GSM25662\"\t\"GSM25663\"\t\"GSM25680\"\t\"GSM25681\"\t\"GSM25682\"\t\"GSM25683\"\t\"GSM25684\"\t\"GSM25685\"\t\"GSM25686\"\t\"GSM25687\"\t\"GSM48650\"\t\"GSM48651\"\t\"GSM48652\"\t\"GSM48653\"\t\"GSM48654\"\t\"GSM48655\"\t\"GSM48656\"\t\"GSM48657\"\t\"GSM48658\"\t\"GSM48660\"\t\"GSM48661\"\t\"GSM48662\"\t\"GSM48663\"\t\"GSM48664\"\t\"GSM48665\"\t\"GSM136441\"\t\"GSM136442\"\t\"GSM136443\"\t\"GSM136444\"\t\"GSM136445\"\t\"GSM136506\"\t\"GSM136507\"\t\"GSM136508\"\t\"GSM136509\"\t\"GSM136510\"\t\"GSM136514\"\t\"GSM136515\"\t\"GSM136516\"\t\"GSM136517\"\t\"GSM136518\"\t\"GSM136520\"\t\"GSM136521\"\t\"GSM136522\"\t\"GSM136523\"\t\"GSM136524\"\t\"GSM136528\"\t\"GSM136529\"\t\"GSM136530\"\t\"GSM136531\"\t\"GSM136532\"\t\"GSM136534\"\t\"GSM136535\"\t\"GSM136536\"\t\"GSM136537\"\t\"GSM136538\"\t\"GSM136539\"\t\"GSM136540\"\t\"GSM136541\"\t\"GSM136542\"\t\"GSM136543\"\t\"GSM136544\"\t\"GSM136545\"\t\"GSM136546\"\t\"GSM136547\"\t\"GSM136548\"\t\"GSM136549\"\t\"GSM136550\"\t\"GSM136551\"\t\"GSM136552\"\t\"GSM136553\"\t\"GSM136555\"\t\"GSM136556\"\t\"GSM136557\"\t\"GSM136558\"\t\"GSM136559\"\t\"GSM136563\"\t\"GSM136564\"\t\"GSM136565\"\t\"GSM136566\"\t\"GSM136567\"\t\"GSM136568\"\t\"GSM136569\"\t\"GSM136570\"\t\"GSM136571\"\t\"GSM136572\"\t\"GSM136573\"\t\"GSM136574\"\t\"GSM136575\"\t\"GSM136576\"\t\"GSM136577\"\t\"GSM136658\"\t\"GSM136659\"\t\"GSM136660\"\t\"GSM136661\"\t\"GSM136662\"\t\"GSM136663\"\t\"GSM136664\"\t\"GSM136665\"\t\"GSM136666\"\t\"GSM136667\"\t\"GSM136668\"\t\"GSM136669\"\t\"GSM136670\"\t\"GSM136671\"\t\"GSM136672\"\t\"GSM136673\"\t\"GSM136674\"\t\"GSM136675\"\t\"GSM136676\"\t\"GSM136677\"\t\"GSM136705\"\t\"GSM136706\"\t\"GSM136707\"\t\"GSM136708\"\t\"GSM136709\"\t\"GSM136710\"\t\"GSM136711\"\t\"GSM136712\"\t\"GSM136713\"\t\"GSM136714\"\t\"GSM136715\"\t\"GSM136716\"\t\"GSM136717\"\t\"GSM136718\"\t\"GSM136719\"\t\"GSM136720\"\t\"GSM136721\"\t\"GSM136722\"\t\"GSM136723\"\t\"GSM136724\"\t\"GSM136725\"\t\"GSM136726\"\t\"GSM136727\"\t\"GSM136729\"\r\n"
]
}
],
"source": [
"!head -n 35 GSE5859_series_matrix.txt "
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": false,
"scrolled": true
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>!Sample_geo_accession</th>\n",
" <th>GSM25349</th>\n",
" <th>GSM25350</th>\n",
" <th>GSM25356</th>\n",
" <th>GSM25357</th>\n",
" <th>GSM25358</th>\n",
" <th>GSM25359</th>\n",
" <th>GSM25360</th>\n",
" <th>GSM25361</th>\n",
" <th>GSM25377</th>\n",
" <th>...</th>\n",
" <th>GSM136719</th>\n",
" <th>GSM136720</th>\n",
" <th>GSM136721</th>\n",
" <th>GSM136722</th>\n",
" <th>GSM136723</th>\n",
" <th>GSM136724</th>\n",
" <th>GSM136725</th>\n",
" <th>GSM136726</th>\n",
" <th>GSM136727</th>\n",
" <th>GSM136729</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>!Sample_status</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>...</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>!Sample_submission_date</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>...</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>!Sample_last_update_date</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>...</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>!Sample_type</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>...</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>!Sample_channel_count</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>...</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>!Sample_source_name_ch1</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>!Sample_organism_ch1</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>...</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>Coriell cell line repository identifier: GM06985</td>\n",
" <td>Coriell cell line repository identifier: GM06985</td>\n",
" <td>Coriell cell line repository identifier: GM06993</td>\n",
" <td>Coriell cell line repository identifier: GM06993</td>\n",
" <td>Coriell cell line repository identifier: GM06994</td>\n",
" <td>Coriell cell line repository identifier: GM06994</td>\n",
" <td>Coriell cell line repository identifier: GM07000</td>\n",
" <td>Coriell cell line repository identifier: GM07000</td>\n",
" <td>Coriell cell line repository identifier: GM07022</td>\n",
" <td>...</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>!Sample_molecule_ch1</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>...</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>!Sample_label_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" </tr>\n",
" <tr>\n",
" <th>18</th>\n",
" <td>!Sample_label_protocol_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>19</th>\n",
" <td>!Sample_taxid_ch1</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>...</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" </tr>\n",
" <tr>\n",
" <th>20</th>\n",
" <td>!Sample_hyb_protocol</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>21</th>\n",
" <td>!Sample_scan_protocol</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>22</th>\n",
" <td>!Sample_description</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>23</th>\n",
" <td>!Sample_data_processing</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>24</th>\n",
" <td>!Sample_platform_id</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>...</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" </tr>\n",
" <tr>\n",
" <th>25</th>\n",
" <td>!Sample_contact_name</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>...</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" </tr>\n",
" <tr>\n",
" <th>26</th>\n",
" <td>!Sample_contact_email</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>...</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" </tr>\n",
" <tr>\n",
" <th>27</th>\n",
" <td>!Sample_contact_phone</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>...</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" </tr>\n",
" <tr>\n",
" <th>28</th>\n",
" <td>!Sample_contact_department</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>...</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" </tr>\n",
" <tr>\n",
" <th>29</th>\n",
" <td>!Sample_contact_institute</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8804</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MA_at</td>\n",
" <td>2119.2</td>\n",
" <td>1852.2</td>\n",
" <td>799.8</td>\n",
" <td>1011.7</td>\n",
" <td>600.1</td>\n",
" <td>588.7</td>\n",
" <td>676.9</td>\n",
" <td>1039.7</td>\n",
" <td>1109.1</td>\n",
" <td>...</td>\n",
" <td>3289.38</td>\n",
" <td>1830.6</td>\n",
" <td>3108.71</td>\n",
" <td>3062.72</td>\n",
" <td>2792.42</td>\n",
" <td>2550.21</td>\n",
" <td>1969.34</td>\n",
" <td>2991.8</td>\n",
" <td>1639.34</td>\n",
" <td>1781.9</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8805</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MB_at</td>\n",
" <td>998.9</td>\n",
" <td>645.2</td>\n",
" <td>454.4</td>\n",
" <td>411.2</td>\n",
" <td>363.3</td>\n",
" <td>327.2</td>\n",
" <td>301.3</td>\n",
" <td>272.3</td>\n",
" <td>581.4</td>\n",
" <td>...</td>\n",
" <td>1838.74</td>\n",
" <td>698.4</td>\n",
" <td>1665.11</td>\n",
" <td>1481.87</td>\n",
" <td>1465.12</td>\n",
" <td>1281.93</td>\n",
" <td>1191.78</td>\n",
" <td>2031.46</td>\n",
" <td>734.099</td>\n",
" <td>1099.17</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8806</th>\n",
" <td>AFFX-HUMRGE/M10098_3_at</td>\n",
" <td>45.7</td>\n",
" <td>75.2</td>\n",
" <td>31</td>\n",
" <td>353.5</td>\n",
" <td>108.4</td>\n",
" <td>287.9</td>\n",
" <td>91.7</td>\n",
" <td>38.6</td>\n",
" <td>21.4</td>\n",
" <td>...</td>\n",
" <td>76.8999</td>\n",
" <td>85.9002</td>\n",
" <td>38.3999</td>\n",
" <td>113.3</td>\n",
" <td>57.4</td>\n",
" <td>175.101</td>\n",
" <td>53.4001</td>\n",
" <td>13.4</td>\n",
" <td>16</td>\n",
" <td>77.9999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8807</th>\n",
" <td>AFFX-HUMRGE/M10098_5_at</td>\n",
" <td>11.4</td>\n",
" <td>109.8</td>\n",
" <td>77.6</td>\n",
" <td>99.2</td>\n",
" <td>75.4</td>\n",
" <td>134.5</td>\n",
" <td>8.9</td>\n",
" <td>9.8</td>\n",
" <td>28.1</td>\n",
" <td>...</td>\n",
" <td>28.5</td>\n",
" <td>5.69999</td>\n",
" <td>11.1</td>\n",
" <td>23.4001</td>\n",
" <td>4.79999</td>\n",
" <td>73.6999</td>\n",
" <td>5.10001</td>\n",
" <td>3.2</td>\n",
" <td>25.5001</td>\n",
" <td>4.39999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8808</th>\n",
" <td>AFFX-HUMRGE/M10098_M_at</td>\n",
" <td>56.1</td>\n",
" <td>57.3</td>\n",
" <td>104.8</td>\n",
" <td>201.9</td>\n",
" <td>71.8</td>\n",
" <td>189</td>\n",
" <td>39.7</td>\n",
" <td>13</td>\n",
" <td>63</td>\n",
" <td>...</td>\n",
" <td>30.4</td>\n",
" <td>51.5</td>\n",
" <td>32.9999</td>\n",
" <td>28.7</td>\n",
" <td>23.9</td>\n",
" <td>122.5</td>\n",
" <td>6.5</td>\n",
" <td>34.8999</td>\n",
" <td>5.60001</td>\n",
" <td>7.79998</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8809</th>\n",
" <td>AFFX-M27830_3_at</td>\n",
" <td>42.1</td>\n",
" <td>183.5</td>\n",
" <td>41.3</td>\n",
" <td>51.9</td>\n",
" <td>71.1</td>\n",
" <td>24.6</td>\n",
" <td>26.1</td>\n",
" <td>34.6</td>\n",
" <td>50.8</td>\n",
" <td>...</td>\n",
" <td>52.9002</td>\n",
" <td>50.2002</td>\n",
" <td>39.9001</td>\n",
" <td>103.4</td>\n",
" <td>47.8</td>\n",
" <td>120</td>\n",
" <td>38.9999</td>\n",
" <td>42.9001</td>\n",
" <td>31.0001</td>\n",
" <td>43.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8810</th>\n",
" <td>AFFX-M27830_5_at</td>\n",
" <td>203</td>\n",
" <td>132.5</td>\n",
" <td>223.7</td>\n",
" <td>214.5</td>\n",
" <td>175.2</td>\n",
" <td>384.5</td>\n",
" <td>237.7</td>\n",
" <td>200.5</td>\n",
" <td>137.5</td>\n",
" <td>...</td>\n",
" <td>151.5</td>\n",
" <td>166.5</td>\n",
" <td>171</td>\n",
" <td>184</td>\n",
" <td>131.9</td>\n",
" <td>267.201</td>\n",
" <td>41.7001</td>\n",
" <td>57.8999</td>\n",
" <td>179.7</td>\n",
" <td>236.201</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8811</th>\n",
" <td>AFFX-M27830_M_at</td>\n",
" <td>1332</td>\n",
" <td>1404.2</td>\n",
" <td>864.7</td>\n",
" <td>459.7</td>\n",
" <td>942.6</td>\n",
" <td>1549.3</td>\n",
" <td>1923.3</td>\n",
" <td>1180.4</td>\n",
" <td>461.4</td>\n",
" <td>...</td>\n",
" <td>464.701</td>\n",
" <td>623.001</td>\n",
" <td>402.7</td>\n",
" <td>552.599</td>\n",
" <td>367.801</td>\n",
" <td>731.701</td>\n",
" <td>154.1</td>\n",
" <td>94.0998</td>\n",
" <td>414.699</td>\n",
" <td>577.001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8812</th>\n",
" <td>AFFX-r2-Bs-dap-3_at</td>\n",
" <td>15.3</td>\n",
" <td>2.4</td>\n",
" <td>30.6</td>\n",
" <td>5.9</td>\n",
" <td>3.5</td>\n",
" <td>7.4</td>\n",
" <td>9.7</td>\n",
" <td>3.3</td>\n",
" <td>60.5</td>\n",
" <td>...</td>\n",
" <td>5.49999</td>\n",
" <td>1.7</td>\n",
" <td>1.5</td>\n",
" <td>8</td>\n",
" <td>2.80001</td>\n",
" <td>10.2</td>\n",
" <td>3.39999</td>\n",
" <td>1.5</td>\n",
" <td>1.1</td>\n",
" <td>1.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8813</th>\n",
" <td>AFFX-r2-Bs-dap-5_at</td>\n",
" <td>3.5</td>\n",
" <td>7.1</td>\n",
" <td>3.9</td>\n",
" <td>3.9</td>\n",
" <td>1.3</td>\n",
" <td>4.5</td>\n",
" <td>27.3</td>\n",
" <td>8.1</td>\n",
" <td>4.4</td>\n",
" <td>...</td>\n",
" <td>3.2</td>\n",
" <td>10.2</td>\n",
" <td>4.39999</td>\n",
" <td>2.39999</td>\n",
" <td>1.7</td>\n",
" <td>5.10001</td>\n",
" <td>3.70001</td>\n",
" <td>2.89999</td>\n",
" <td>13.7</td>\n",
" <td>2.5</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8814</th>\n",
" <td>AFFX-r2-Bs-dap-M_at</td>\n",
" <td>8.5</td>\n",
" <td>3.3</td>\n",
" <td>2.1</td>\n",
" <td>53.3</td>\n",
" <td>3.2</td>\n",
" <td>17.2</td>\n",
" <td>25.6</td>\n",
" <td>3.2</td>\n",
" <td>3.4</td>\n",
" <td>...</td>\n",
" <td>10.4</td>\n",
" <td>0.7</td>\n",
" <td>0.8</td>\n",
" <td>1.1</td>\n",
" <td>2.19999</td>\n",
" <td>5.79999</td>\n",
" <td>0.299999</td>\n",
" <td>1.3</td>\n",
" <td>3.1</td>\n",
" <td>1.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8815</th>\n",
" <td>AFFX-r2-Bs-lys-3_at</td>\n",
" <td>47.1</td>\n",
" <td>55.3</td>\n",
" <td>11.9</td>\n",
" <td>49.1</td>\n",
" <td>17.6</td>\n",
" <td>9.8</td>\n",
" <td>5.9</td>\n",
" <td>40.3</td>\n",
" <td>13.1</td>\n",
" <td>...</td>\n",
" <td>20.9</td>\n",
" <td>11.5</td>\n",
" <td>16.3</td>\n",
" <td>15.1</td>\n",
" <td>32</td>\n",
" <td>20.0999</td>\n",
" <td>9.10002</td>\n",
" <td>27.6001</td>\n",
" <td>10.1</td>\n",
" <td>15.8999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8816</th>\n",
" <td>AFFX-r2-Bs-lys-5_at</td>\n",
" <td>8.2</td>\n",
" <td>13.3</td>\n",
" <td>1.9</td>\n",
" <td>26.6</td>\n",
" <td>6.9</td>\n",
" <td>2</td>\n",
" <td>16.4</td>\n",
" <td>2.7</td>\n",
" <td>5.4</td>\n",
" <td>...</td>\n",
" <td>0.6</td>\n",
" <td>3.70001</td>\n",
" <td>2.99999</td>\n",
" <td>23.8</td>\n",
" <td>1.6</td>\n",
" <td>1.6</td>\n",
" <td>8.4</td>\n",
" <td>1.4</td>\n",
" <td>1.9</td>\n",
" <td>1.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8817</th>\n",
" <td>AFFX-r2-Bs-lys-M_at</td>\n",
" <td>5.1</td>\n",
" <td>39.4</td>\n",
" <td>35.7</td>\n",
" <td>43.3</td>\n",
" <td>18</td>\n",
" <td>31.7</td>\n",
" <td>17.9</td>\n",
" <td>19</td>\n",
" <td>63.5</td>\n",
" <td>...</td>\n",
" <td>4.30001</td>\n",
" <td>31.8999</td>\n",
" <td>1.1</td>\n",
" <td>4.79999</td>\n",
" <td>18.5</td>\n",
" <td>6.1</td>\n",
" <td>1.4</td>\n",
" <td>25.0001</td>\n",
" <td>6.60002</td>\n",
" <td>32.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8818</th>\n",
" <td>AFFX-r2-Bs-phe-3_at</td>\n",
" <td>77.1</td>\n",
" <td>61.4</td>\n",
" <td>9.2</td>\n",
" <td>79.6</td>\n",
" <td>45.3</td>\n",
" <td>27.3</td>\n",
" <td>16.6</td>\n",
" <td>27.3</td>\n",
" <td>43.7</td>\n",
" <td>...</td>\n",
" <td>57.2999</td>\n",
" <td>35.1</td>\n",
" <td>44</td>\n",
" <td>27.3</td>\n",
" <td>55.5002</td>\n",
" <td>47.8999</td>\n",
" <td>5.00001</td>\n",
" <td>14.5</td>\n",
" <td>7.89999</td>\n",
" <td>49.4</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8819</th>\n",
" <td>AFFX-r2-Bs-phe-5_at</td>\n",
" <td>6.4</td>\n",
" <td>6.7</td>\n",
" <td>1.8</td>\n",
" <td>1.3</td>\n",
" <td>14.8</td>\n",
" <td>4.5</td>\n",
" <td>16.5</td>\n",
" <td>3.3</td>\n",
" <td>47.6</td>\n",
" <td>...</td>\n",
" <td>10.1</td>\n",
" <td>13.6</td>\n",
" <td>5.49999</td>\n",
" <td>1.5</td>\n",
" <td>13.6</td>\n",
" <td>9.10002</td>\n",
" <td>24.4</td>\n",
" <td>15.5</td>\n",
" <td>3.70001</td>\n",
" <td>1.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8820</th>\n",
" <td>AFFX-r2-Bs-phe-M_at</td>\n",
" <td>10</td>\n",
" <td>5.8</td>\n",
" <td>2.8</td>\n",
" <td>10.2</td>\n",
" <td>1.5</td>\n",
" <td>40</td>\n",
" <td>39</td>\n",
" <td>57.5</td>\n",
" <td>61.6</td>\n",
" <td>...</td>\n",
" <td>1.1</td>\n",
" <td>2.89999</td>\n",
" <td>2.19999</td>\n",
" <td>3.2</td>\n",
" <td>9.50002</td>\n",
" <td>12.7</td>\n",
" <td>5.29999</td>\n",
" <td>21.4</td>\n",
" <td>3.39999</td>\n",
" <td>24.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8821</th>\n",
" <td>AFFX-r2-Bs-thr-3_s_at</td>\n",
" <td>12.2</td>\n",
" <td>9</td>\n",
" <td>4</td>\n",
" <td>11.3</td>\n",
" <td>3.4</td>\n",
" <td>3.6</td>\n",
" <td>3.5</td>\n",
" <td>6.3</td>\n",
" <td>14</td>\n",
" <td>...</td>\n",
" <td>7.30002</td>\n",
" <td>2.99999</td>\n",
" <td>4</td>\n",
" <td>24.2999</td>\n",
" <td>13.1</td>\n",
" <td>11.5</td>\n",
" <td>25.6</td>\n",
" <td>8.19998</td>\n",
" <td>19.9</td>\n",
" <td>5.19999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8822</th>\n",
" <td>AFFX-r2-Bs-thr-5_s_at</td>\n",
" <td>55.8</td>\n",
" <td>49.3</td>\n",
" <td>17.8</td>\n",
" <td>38.6</td>\n",
" <td>97.6</td>\n",
" <td>38.2</td>\n",
" <td>43.2</td>\n",
" <td>56.8</td>\n",
" <td>37.8</td>\n",
" <td>...</td>\n",
" <td>48.4999</td>\n",
" <td>76.0001</td>\n",
" <td>52.6</td>\n",
" <td>72.8002</td>\n",
" <td>61.7998</td>\n",
" <td>42.9999</td>\n",
" <td>31.5999</td>\n",
" <td>36.1001</td>\n",
" <td>60.4999</td>\n",
" <td>84.0002</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8823</th>\n",
" <td>AFFX-r2-Bs-thr-M_s_at</td>\n",
" <td>81.3</td>\n",
" <td>15.3</td>\n",
" <td>42.1</td>\n",
" <td>48.2</td>\n",
" <td>60.2</td>\n",
" <td>8</td>\n",
" <td>41.8</td>\n",
" <td>13.1</td>\n",
" <td>42</td>\n",
" <td>...</td>\n",
" <td>75.3001</td>\n",
" <td>15.1</td>\n",
" <td>12.2</td>\n",
" <td>47.8</td>\n",
" <td>51.6</td>\n",
" <td>62.6998</td>\n",
" <td>24.7</td>\n",
" <td>45.1001</td>\n",
" <td>42.0001</td>\n",
" <td>49.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8824</th>\n",
" <td>AFFX-r2-Ec-bioB-3_at</td>\n",
" <td>259</td>\n",
" <td>266.7</td>\n",
" <td>664.5</td>\n",
" <td>148.4</td>\n",
" <td>281.6</td>\n",
" <td>349.9</td>\n",
" <td>469.3</td>\n",
" <td>152.9</td>\n",
" <td>674.7</td>\n",
" <td>...</td>\n",
" <td>126.7</td>\n",
" <td>99.4997</td>\n",
" <td>76.7998</td>\n",
" <td>152.8</td>\n",
" <td>160.8</td>\n",
" <td>118.3</td>\n",
" <td>105.6</td>\n",
" <td>75.6999</td>\n",
" <td>120.3</td>\n",
" <td>203.401</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8825</th>\n",
" <td>AFFX-r2-Ec-bioB-5_at</td>\n",
" <td>286.5</td>\n",
" <td>185.5</td>\n",
" <td>572.9</td>\n",
" <td>123.2</td>\n",
" <td>251.6</td>\n",
" <td>360.4</td>\n",
" <td>432.7</td>\n",
" <td>183.5</td>\n",
" <td>677.2</td>\n",
" <td>...</td>\n",
" <td>162.3</td>\n",
" <td>96.9998</td>\n",
" <td>144.1</td>\n",
" <td>158.3</td>\n",
" <td>126.5</td>\n",
" <td>170.7</td>\n",
" <td>100.9</td>\n",
" <td>98.9001</td>\n",
" <td>105.7</td>\n",
" <td>160.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8826</th>\n",
" <td>AFFX-r2-Ec-bioB-M_at</td>\n",
" <td>370.1</td>\n",
" <td>250</td>\n",
" <td>806.4</td>\n",
" <td>136.9</td>\n",
" <td>332.3</td>\n",
" <td>452.4</td>\n",
" <td>543.7</td>\n",
" <td>168.4</td>\n",
" <td>932.8</td>\n",
" <td>...</td>\n",
" <td>180.9</td>\n",
" <td>130.9</td>\n",
" <td>155.9</td>\n",
" <td>198</td>\n",
" <td>140.3</td>\n",
" <td>212.3</td>\n",
" <td>121.6</td>\n",
" <td>76.7998</td>\n",
" <td>103.7</td>\n",
" <td>191.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8827</th>\n",
" <td>AFFX-r2-Ec-bioC-3_at</td>\n",
" <td>1353.8</td>\n",
" <td>1032.4</td>\n",
" <td>2539.7</td>\n",
" <td>646.1</td>\n",
" <td>1303.8</td>\n",
" <td>1805.9</td>\n",
" <td>2030.1</td>\n",
" <td>777.4</td>\n",
" <td>3466.8</td>\n",
" <td>...</td>\n",
" <td>478.299</td>\n",
" <td>549.7</td>\n",
" <td>516.201</td>\n",
" <td>586.2</td>\n",
" <td>528.2</td>\n",
" <td>700.499</td>\n",
" <td>379.201</td>\n",
" <td>262.499</td>\n",
" <td>460.399</td>\n",
" <td>637.902</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8828</th>\n",
" <td>AFFX-r2-Ec-bioC-5_at</td>\n",
" <td>1351.9</td>\n",
" <td>1015.2</td>\n",
" <td>2340.9</td>\n",
" <td>439.1</td>\n",
" <td>1097.6</td>\n",
" <td>1527.3</td>\n",
" <td>2097.1</td>\n",
" <td>696.4</td>\n",
" <td>3240.3</td>\n",
" <td>...</td>\n",
" <td>525.898</td>\n",
" <td>548.501</td>\n",
" <td>619.899</td>\n",
" <td>705.201</td>\n",
" <td>642.601</td>\n",
" <td>899.8</td>\n",
" <td>420.4</td>\n",
" <td>225.7</td>\n",
" <td>478.2</td>\n",
" <td>540.099</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8829</th>\n",
" <td>AFFX-r2-Ec-bioD-3_at</td>\n",
" <td>4456.8</td>\n",
" <td>3188.6</td>\n",
" <td>7993.1</td>\n",
" <td>1845.3</td>\n",
" <td>3985.8</td>\n",
" <td>4621.8</td>\n",
" <td>6283.4</td>\n",
" <td>2112.3</td>\n",
" <td>11969.8</td>\n",
" <td>...</td>\n",
" <td>7876.29</td>\n",
" <td>8033.43</td>\n",
" <td>7867.01</td>\n",
" <td>9144.57</td>\n",
" <td>7400.46</td>\n",
" <td>12090.6</td>\n",
" <td>6472.02</td>\n",
" <td>4458.06</td>\n",
" <td>8437.5</td>\n",
" <td>7842.51</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8830</th>\n",
" <td>AFFX-r2-Ec-bioD-5_at</td>\n",
" <td>3634.6</td>\n",
" <td>2813.5</td>\n",
" <td>6777.1</td>\n",
" <td>1340</td>\n",
" <td>3385.2</td>\n",
" <td>3853.5</td>\n",
" <td>5323.2</td>\n",
" <td>1690.8</td>\n",
" <td>8892.4</td>\n",
" <td>...</td>\n",
" <td>7070.52</td>\n",
" <td>7290.49</td>\n",
" <td>7330.01</td>\n",
" <td>7994.54</td>\n",
" <td>5365.14</td>\n",
" <td>10405.8</td>\n",
" <td>5860.87</td>\n",
" <td>3727.52</td>\n",
" <td>7137.98</td>\n",
" <td>7780.25</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8831</th>\n",
" <td>AFFX-r2-P1-cre-3_at</td>\n",
" <td>15062.4</td>\n",
" <td>10854.6</td>\n",
" <td>19995.1</td>\n",
" <td>6494</td>\n",
" <td>12609.5</td>\n",
" <td>15177.5</td>\n",
" <td>17468.9</td>\n",
" <td>6847.4</td>\n",
" <td>27817.6</td>\n",
" <td>...</td>\n",
" <td>19.3999</td>\n",
" <td>9.69997</td>\n",
" <td>38.6</td>\n",
" <td>9.10002</td>\n",
" <td>22.9001</td>\n",
" <td>8.29999</td>\n",
" <td>21.7</td>\n",
" <td>10.2</td>\n",
" <td>33.4001</td>\n",
" <td>11.7</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8832</th>\n",
" <td>AFFX-r2-P1-cre-5_at</td>\n",
" <td>17679.5</td>\n",
" <td>13325.2</td>\n",
" <td>20964.6</td>\n",
" <td>7346.5</td>\n",
" <td>15322.4</td>\n",
" <td>15541.8</td>\n",
" <td>24135.4</td>\n",
" <td>8037.3</td>\n",
" <td>32044.7</td>\n",
" <td>...</td>\n",
" <td>6.60002</td>\n",
" <td>2</td>\n",
" <td>12.5</td>\n",
" <td>4</td>\n",
" <td>12.7</td>\n",
" <td>7.89999</td>\n",
" <td>6.39999</td>\n",
" <td>4.59999</td>\n",
" <td>4.39999</td>\n",
" <td>0.8</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8833</th>\n",
" <td>!series_matrix_table_end</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>8834 rows × 209 columns</p>\n",
"</div>"
],
"text/plain": [
" !Sample_geo_accession \\\n",
"0 !Sample_status \n",
"1 !Sample_submission_date \n",
"2 !Sample_last_update_date \n",
"3 !Sample_type \n",
"4 !Sample_channel_count \n",
"5 !Sample_source_name_ch1 \n",
"6 !Sample_organism_ch1 \n",
"7 !Sample_characteristics_ch1 \n",
"8 !Sample_characteristics_ch1 \n",
"9 !Sample_characteristics_ch1 \n",
"10 !Sample_characteristics_ch1 \n",
"11 !Sample_characteristics_ch1 \n",
"12 !Sample_characteristics_ch1 \n",
"13 !Sample_biomaterial_provider_ch1 \n",
"14 !Sample_biomaterial_provider_ch1 \n",
"15 !Sample_biomaterial_provider_ch1 \n",
"16 !Sample_molecule_ch1 \n",
"17 !Sample_label_ch1 \n",
"18 !Sample_label_protocol_ch1 \n",
"19 !Sample_taxid_ch1 \n",
"20 !Sample_hyb_protocol \n",
"21 !Sample_scan_protocol \n",
"22 !Sample_description \n",
"23 !Sample_data_processing \n",
"24 !Sample_platform_id \n",
"25 !Sample_contact_name \n",
"26 !Sample_contact_email \n",
"27 !Sample_contact_phone \n",
"28 !Sample_contact_department \n",
"29 !Sample_contact_institute \n",
"... ... \n",
"8804 AFFX-HUMISGF3A/M97935_MA_at \n",
"8805 AFFX-HUMISGF3A/M97935_MB_at \n",
"8806 AFFX-HUMRGE/M10098_3_at \n",
"8807 AFFX-HUMRGE/M10098_5_at \n",
"8808 AFFX-HUMRGE/M10098_M_at \n",
"8809 AFFX-M27830_3_at \n",
"8810 AFFX-M27830_5_at \n",
"8811 AFFX-M27830_M_at \n",
"8812 AFFX-r2-Bs-dap-3_at \n",
"8813 AFFX-r2-Bs-dap-5_at \n",
"8814 AFFX-r2-Bs-dap-M_at \n",
"8815 AFFX-r2-Bs-lys-3_at \n",
"8816 AFFX-r2-Bs-lys-5_at \n",
"8817 AFFX-r2-Bs-lys-M_at \n",
"8818 AFFX-r2-Bs-phe-3_at \n",
"8819 AFFX-r2-Bs-phe-5_at \n",
"8820 AFFX-r2-Bs-phe-M_at \n",
"8821 AFFX-r2-Bs-thr-3_s_at \n",
"8822 AFFX-r2-Bs-thr-5_s_at \n",
"8823 AFFX-r2-Bs-thr-M_s_at \n",
"8824 AFFX-r2-Ec-bioB-3_at \n",
"8825 AFFX-r2-Ec-bioB-5_at \n",
"8826 AFFX-r2-Ec-bioB-M_at \n",
"8827 AFFX-r2-Ec-bioC-3_at \n",
"8828 AFFX-r2-Ec-bioC-5_at \n",
"8829 AFFX-r2-Ec-bioD-3_at \n",
"8830 AFFX-r2-Ec-bioD-5_at \n",
"8831 AFFX-r2-P1-cre-3_at \n",
"8832 AFFX-r2-P1-cre-5_at \n",
"8833 !series_matrix_table_end \n",
"\n",
" GSM25349 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06985 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2119.2 \n",
"8805 998.9 \n",
"8806 45.7 \n",
"8807 11.4 \n",
"8808 56.1 \n",
"8809 42.1 \n",
"8810 203 \n",
"8811 1332 \n",
"8812 15.3 \n",
"8813 3.5 \n",
"8814 8.5 \n",
"8815 47.1 \n",
"8816 8.2 \n",
"8817 5.1 \n",
"8818 77.1 \n",
"8819 6.4 \n",
"8820 10 \n",
"8821 12.2 \n",
"8822 55.8 \n",
"8823 81.3 \n",
"8824 259 \n",
"8825 286.5 \n",
"8826 370.1 \n",
"8827 1353.8 \n",
"8828 1351.9 \n",
"8829 4456.8 \n",
"8830 3634.6 \n",
"8831 15062.4 \n",
"8832 17679.5 \n",
"8833 NaN \n",
"\n",
" GSM25350 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06985 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1852.2 \n",
"8805 645.2 \n",
"8806 75.2 \n",
"8807 109.8 \n",
"8808 57.3 \n",
"8809 183.5 \n",
"8810 132.5 \n",
"8811 1404.2 \n",
"8812 2.4 \n",
"8813 7.1 \n",
"8814 3.3 \n",
"8815 55.3 \n",
"8816 13.3 \n",
"8817 39.4 \n",
"8818 61.4 \n",
"8819 6.7 \n",
"8820 5.8 \n",
"8821 9 \n",
"8822 49.3 \n",
"8823 15.3 \n",
"8824 266.7 \n",
"8825 185.5 \n",
"8826 250 \n",
"8827 1032.4 \n",
"8828 1015.2 \n",
"8829 3188.6 \n",
"8830 2813.5 \n",
"8831 10854.6 \n",
"8832 13325.2 \n",
"8833 NaN \n",
"\n",
" GSM25356 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06993 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 799.8 \n",
"8805 454.4 \n",
"8806 31 \n",
"8807 77.6 \n",
"8808 104.8 \n",
"8809 41.3 \n",
"8810 223.7 \n",
"8811 864.7 \n",
"8812 30.6 \n",
"8813 3.9 \n",
"8814 2.1 \n",
"8815 11.9 \n",
"8816 1.9 \n",
"8817 35.7 \n",
"8818 9.2 \n",
"8819 1.8 \n",
"8820 2.8 \n",
"8821 4 \n",
"8822 17.8 \n",
"8823 42.1 \n",
"8824 664.5 \n",
"8825 572.9 \n",
"8826 806.4 \n",
"8827 2539.7 \n",
"8828 2340.9 \n",
"8829 7993.1 \n",
"8830 6777.1 \n",
"8831 19995.1 \n",
"8832 20964.6 \n",
"8833 NaN \n",
"\n",
" GSM25357 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06993 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1011.7 \n",
"8805 411.2 \n",
"8806 353.5 \n",
"8807 99.2 \n",
"8808 201.9 \n",
"8809 51.9 \n",
"8810 214.5 \n",
"8811 459.7 \n",
"8812 5.9 \n",
"8813 3.9 \n",
"8814 53.3 \n",
"8815 49.1 \n",
"8816 26.6 \n",
"8817 43.3 \n",
"8818 79.6 \n",
"8819 1.3 \n",
"8820 10.2 \n",
"8821 11.3 \n",
"8822 38.6 \n",
"8823 48.2 \n",
"8824 148.4 \n",
"8825 123.2 \n",
"8826 136.9 \n",
"8827 646.1 \n",
"8828 439.1 \n",
"8829 1845.3 \n",
"8830 1340 \n",
"8831 6494 \n",
"8832 7346.5 \n",
"8833 NaN \n",
"\n",
" GSM25358 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06994 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 600.1 \n",
"8805 363.3 \n",
"8806 108.4 \n",
"8807 75.4 \n",
"8808 71.8 \n",
"8809 71.1 \n",
"8810 175.2 \n",
"8811 942.6 \n",
"8812 3.5 \n",
"8813 1.3 \n",
"8814 3.2 \n",
"8815 17.6 \n",
"8816 6.9 \n",
"8817 18 \n",
"8818 45.3 \n",
"8819 14.8 \n",
"8820 1.5 \n",
"8821 3.4 \n",
"8822 97.6 \n",
"8823 60.2 \n",
"8824 281.6 \n",
"8825 251.6 \n",
"8826 332.3 \n",
"8827 1303.8 \n",
"8828 1097.6 \n",
"8829 3985.8 \n",
"8830 3385.2 \n",
"8831 12609.5 \n",
"8832 15322.4 \n",
"8833 NaN \n",
"\n",
" GSM25359 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06994 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 588.7 \n",
"8805 327.2 \n",
"8806 287.9 \n",
"8807 134.5 \n",
"8808 189 \n",
"8809 24.6 \n",
"8810 384.5 \n",
"8811 1549.3 \n",
"8812 7.4 \n",
"8813 4.5 \n",
"8814 17.2 \n",
"8815 9.8 \n",
"8816 2 \n",
"8817 31.7 \n",
"8818 27.3 \n",
"8819 4.5 \n",
"8820 40 \n",
"8821 3.6 \n",
"8822 38.2 \n",
"8823 8 \n",
"8824 349.9 \n",
"8825 360.4 \n",
"8826 452.4 \n",
"8827 1805.9 \n",
"8828 1527.3 \n",
"8829 4621.8 \n",
"8830 3853.5 \n",
"8831 15177.5 \n",
"8832 15541.8 \n",
"8833 NaN \n",
"\n",
" GSM25360 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07000 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 676.9 \n",
"8805 301.3 \n",
"8806 91.7 \n",
"8807 8.9 \n",
"8808 39.7 \n",
"8809 26.1 \n",
"8810 237.7 \n",
"8811 1923.3 \n",
"8812 9.7 \n",
"8813 27.3 \n",
"8814 25.6 \n",
"8815 5.9 \n",
"8816 16.4 \n",
"8817 17.9 \n",
"8818 16.6 \n",
"8819 16.5 \n",
"8820 39 \n",
"8821 3.5 \n",
"8822 43.2 \n",
"8823 41.8 \n",
"8824 469.3 \n",
"8825 432.7 \n",
"8826 543.7 \n",
"8827 2030.1 \n",
"8828 2097.1 \n",
"8829 6283.4 \n",
"8830 5323.2 \n",
"8831 17468.9 \n",
"8832 24135.4 \n",
"8833 NaN \n",
"\n",
" GSM25361 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07000 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1039.7 \n",
"8805 272.3 \n",
"8806 38.6 \n",
"8807 9.8 \n",
"8808 13 \n",
"8809 34.6 \n",
"8810 200.5 \n",
"8811 1180.4 \n",
"8812 3.3 \n",
"8813 8.1 \n",
"8814 3.2 \n",
"8815 40.3 \n",
"8816 2.7 \n",
"8817 19 \n",
"8818 27.3 \n",
"8819 3.3 \n",
"8820 57.5 \n",
"8821 6.3 \n",
"8822 56.8 \n",
"8823 13.1 \n",
"8824 152.9 \n",
"8825 183.5 \n",
"8826 168.4 \n",
"8827 777.4 \n",
"8828 696.4 \n",
"8829 2112.3 \n",
"8830 1690.8 \n",
"8831 6847.4 \n",
"8832 8037.3 \n",
"8833 NaN \n",
"\n",
" GSM25377 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07022 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1109.1 \n",
"8805 581.4 \n",
"8806 21.4 \n",
"8807 28.1 \n",
"8808 63 \n",
"8809 50.8 \n",
"8810 137.5 \n",
"8811 461.4 \n",
"8812 60.5 \n",
"8813 4.4 \n",
"8814 3.4 \n",
"8815 13.1 \n",
"8816 5.4 \n",
"8817 63.5 \n",
"8818 43.7 \n",
"8819 47.6 \n",
"8820 61.6 \n",
"8821 14 \n",
"8822 37.8 \n",
"8823 42 \n",
"8824 674.7 \n",
"8825 677.2 \n",
"8826 932.8 \n",
"8827 3466.8 \n",
"8828 3240.3 \n",
"8829 11969.8 \n",
"8830 8892.4 \n",
"8831 27817.6 \n",
"8832 32044.7 \n",
"8833 NaN \n",
"\n",
" ... \\\n",
"0 ... \n",
"1 ... \n",
"2 ... \n",
"3 ... \n",
"4 ... \n",
"5 ... \n",
"6 ... \n",
"7 ... \n",
"8 ... \n",
"9 ... \n",
"10 ... \n",
"11 ... \n",
"12 ... \n",
"13 ... \n",
"14 ... \n",
"15 ... \n",
"16 ... \n",
"17 ... \n",
"18 ... \n",
"19 ... \n",
"20 ... \n",
"21 ... \n",
"22 ... \n",
"23 ... \n",
"24 ... \n",
"25 ... \n",
"26 ... \n",
"27 ... \n",
"28 ... \n",
"29 ... \n",
"... ... \n",
"8804 ... \n",
"8805 ... \n",
"8806 ... \n",
"8807 ... \n",
"8808 ... \n",
"8809 ... \n",
"8810 ... \n",
"8811 ... \n",
"8812 ... \n",
"8813 ... \n",
"8814 ... \n",
"8815 ... \n",
"8816 ... \n",
"8817 ... \n",
"8818 ... \n",
"8819 ... \n",
"8820 ... \n",
"8821 ... \n",
"8822 ... \n",
"8823 ... \n",
"8824 ... \n",
"8825 ... \n",
"8826 ... \n",
"8827 ... \n",
"8828 ... \n",
"8829 ... \n",
"8830 ... \n",
"8831 ... \n",
"8832 ... \n",
"8833 ... \n",
"\n",
" GSM136719 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3289.38 \n",
"8805 1838.74 \n",
"8806 76.8999 \n",
"8807 28.5 \n",
"8808 30.4 \n",
"8809 52.9002 \n",
"8810 151.5 \n",
"8811 464.701 \n",
"8812 5.49999 \n",
"8813 3.2 \n",
"8814 10.4 \n",
"8815 20.9 \n",
"8816 0.6 \n",
"8817 4.30001 \n",
"8818 57.2999 \n",
"8819 10.1 \n",
"8820 1.1 \n",
"8821 7.30002 \n",
"8822 48.4999 \n",
"8823 75.3001 \n",
"8824 126.7 \n",
"8825 162.3 \n",
"8826 180.9 \n",
"8827 478.299 \n",
"8828 525.898 \n",
"8829 7876.29 \n",
"8830 7070.52 \n",
"8831 19.3999 \n",
"8832 6.60002 \n",
"8833 NaN \n",
"\n",
" GSM136720 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1830.6 \n",
"8805 698.4 \n",
"8806 85.9002 \n",
"8807 5.69999 \n",
"8808 51.5 \n",
"8809 50.2002 \n",
"8810 166.5 \n",
"8811 623.001 \n",
"8812 1.7 \n",
"8813 10.2 \n",
"8814 0.7 \n",
"8815 11.5 \n",
"8816 3.70001 \n",
"8817 31.8999 \n",
"8818 35.1 \n",
"8819 13.6 \n",
"8820 2.89999 \n",
"8821 2.99999 \n",
"8822 76.0001 \n",
"8823 15.1 \n",
"8824 99.4997 \n",
"8825 96.9998 \n",
"8826 130.9 \n",
"8827 549.7 \n",
"8828 548.501 \n",
"8829 8033.43 \n",
"8830 7290.49 \n",
"8831 9.69997 \n",
"8832 2 \n",
"8833 NaN \n",
"\n",
" GSM136721 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3108.71 \n",
"8805 1665.11 \n",
"8806 38.3999 \n",
"8807 11.1 \n",
"8808 32.9999 \n",
"8809 39.9001 \n",
"8810 171 \n",
"8811 402.7 \n",
"8812 1.5 \n",
"8813 4.39999 \n",
"8814 0.8 \n",
"8815 16.3 \n",
"8816 2.99999 \n",
"8817 1.1 \n",
"8818 44 \n",
"8819 5.49999 \n",
"8820 2.19999 \n",
"8821 4 \n",
"8822 52.6 \n",
"8823 12.2 \n",
"8824 76.7998 \n",
"8825 144.1 \n",
"8826 155.9 \n",
"8827 516.201 \n",
"8828 619.899 \n",
"8829 7867.01 \n",
"8830 7330.01 \n",
"8831 38.6 \n",
"8832 12.5 \n",
"8833 NaN \n",
"\n",
" GSM136722 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3062.72 \n",
"8805 1481.87 \n",
"8806 113.3 \n",
"8807 23.4001 \n",
"8808 28.7 \n",
"8809 103.4 \n",
"8810 184 \n",
"8811 552.599 \n",
"8812 8 \n",
"8813 2.39999 \n",
"8814 1.1 \n",
"8815 15.1 \n",
"8816 23.8 \n",
"8817 4.79999 \n",
"8818 27.3 \n",
"8819 1.5 \n",
"8820 3.2 \n",
"8821 24.2999 \n",
"8822 72.8002 \n",
"8823 47.8 \n",
"8824 152.8 \n",
"8825 158.3 \n",
"8826 198 \n",
"8827 586.2 \n",
"8828 705.201 \n",
"8829 9144.57 \n",
"8830 7994.54 \n",
"8831 9.10002 \n",
"8832 4 \n",
"8833 NaN \n",
"\n",
" GSM136723 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2792.42 \n",
"8805 1465.12 \n",
"8806 57.4 \n",
"8807 4.79999 \n",
"8808 23.9 \n",
"8809 47.8 \n",
"8810 131.9 \n",
"8811 367.801 \n",
"8812 2.80001 \n",
"8813 1.7 \n",
"8814 2.19999 \n",
"8815 32 \n",
"8816 1.6 \n",
"8817 18.5 \n",
"8818 55.5002 \n",
"8819 13.6 \n",
"8820 9.50002 \n",
"8821 13.1 \n",
"8822 61.7998 \n",
"8823 51.6 \n",
"8824 160.8 \n",
"8825 126.5 \n",
"8826 140.3 \n",
"8827 528.2 \n",
"8828 642.601 \n",
"8829 7400.46 \n",
"8830 5365.14 \n",
"8831 22.9001 \n",
"8832 12.7 \n",
"8833 NaN \n",
"\n",
" GSM136724 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2550.21 \n",
"8805 1281.93 \n",
"8806 175.101 \n",
"8807 73.6999 \n",
"8808 122.5 \n",
"8809 120 \n",
"8810 267.201 \n",
"8811 731.701 \n",
"8812 10.2 \n",
"8813 5.10001 \n",
"8814 5.79999 \n",
"8815 20.0999 \n",
"8816 1.6 \n",
"8817 6.1 \n",
"8818 47.8999 \n",
"8819 9.10002 \n",
"8820 12.7 \n",
"8821 11.5 \n",
"8822 42.9999 \n",
"8823 62.6998 \n",
"8824 118.3 \n",
"8825 170.7 \n",
"8826 212.3 \n",
"8827 700.499 \n",
"8828 899.8 \n",
"8829 12090.6 \n",
"8830 10405.8 \n",
"8831 8.29999 \n",
"8832 7.89999 \n",
"8833 NaN \n",
"\n",
" GSM136725 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1969.34 \n",
"8805 1191.78 \n",
"8806 53.4001 \n",
"8807 5.10001 \n",
"8808 6.5 \n",
"8809 38.9999 \n",
"8810 41.7001 \n",
"8811 154.1 \n",
"8812 3.39999 \n",
"8813 3.70001 \n",
"8814 0.299999 \n",
"8815 9.10002 \n",
"8816 8.4 \n",
"8817 1.4 \n",
"8818 5.00001 \n",
"8819 24.4 \n",
"8820 5.29999 \n",
"8821 25.6 \n",
"8822 31.5999 \n",
"8823 24.7 \n",
"8824 105.6 \n",
"8825 100.9 \n",
"8826 121.6 \n",
"8827 379.201 \n",
"8828 420.4 \n",
"8829 6472.02 \n",
"8830 5860.87 \n",
"8831 21.7 \n",
"8832 6.39999 \n",
"8833 NaN \n",
"\n",
" GSM136726 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2991.8 \n",
"8805 2031.46 \n",
"8806 13.4 \n",
"8807 3.2 \n",
"8808 34.8999 \n",
"8809 42.9001 \n",
"8810 57.8999 \n",
"8811 94.0998 \n",
"8812 1.5 \n",
"8813 2.89999 \n",
"8814 1.3 \n",
"8815 27.6001 \n",
"8816 1.4 \n",
"8817 25.0001 \n",
"8818 14.5 \n",
"8819 15.5 \n",
"8820 21.4 \n",
"8821 8.19998 \n",
"8822 36.1001 \n",
"8823 45.1001 \n",
"8824 75.6999 \n",
"8825 98.9001 \n",
"8826 76.7998 \n",
"8827 262.499 \n",
"8828 225.7 \n",
"8829 4458.06 \n",
"8830 3727.52 \n",
"8831 10.2 \n",
"8832 4.59999 \n",
"8833 NaN \n",
"\n",
" GSM136727 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1639.34 \n",
"8805 734.099 \n",
"8806 16 \n",
"8807 25.5001 \n",
"8808 5.60001 \n",
"8809 31.0001 \n",
"8810 179.7 \n",
"8811 414.699 \n",
"8812 1.1 \n",
"8813 13.7 \n",
"8814 3.1 \n",
"8815 10.1 \n",
"8816 1.9 \n",
"8817 6.60002 \n",
"8818 7.89999 \n",
"8819 3.70001 \n",
"8820 3.39999 \n",
"8821 19.9 \n",
"8822 60.4999 \n",
"8823 42.0001 \n",
"8824 120.3 \n",
"8825 105.7 \n",
"8826 103.7 \n",
"8827 460.399 \n",
"8828 478.2 \n",
"8829 8437.5 \n",
"8830 7137.98 \n",
"8831 33.4001 \n",
"8832 4.39999 \n",
"8833 NaN \n",
"\n",
" GSM136729 \n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1781.9 \n",
"8805 1099.17 \n",
"8806 77.9999 \n",
"8807 4.39999 \n",
"8808 7.79998 \n",
"8809 43.6001 \n",
"8810 236.201 \n",
"8811 577.001 \n",
"8812 1.6 \n",
"8813 2.5 \n",
"8814 1.2 \n",
"8815 15.8999 \n",
"8816 1.1 \n",
"8817 32.6 \n",
"8818 49.4 \n",
"8819 1.3 \n",
"8820 24.6001 \n",
"8821 5.19999 \n",
"8822 84.0002 \n",
"8823 49.6001 \n",
"8824 203.401 \n",
"8825 160.6 \n",
"8826 191.3 \n",
"8827 637.902 \n",
"8828 540.099 \n",
"8829 7842.51 \n",
"8830 7780.25 \n",
"8831 11.7 \n",
"8832 0.8 \n",
"8833 NaN \n",
"\n",
"[8834 rows x 209 columns]"
]
},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"df = pd.read_table('GSE5859_series_matrix.txt', skiprows=34, low_memory=False)\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"matrix = df.iloc[40:]\n",
"new_columns = [a for a in matrix.columns]"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"new_columns[0] = 'Probe'"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"matrix.columns = new_columns"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Probe</th>\n",
" <th>GSM25349</th>\n",
" <th>GSM25350</th>\n",
" <th>GSM25356</th>\n",
" <th>GSM25357</th>\n",
" <th>GSM25358</th>\n",
" <th>GSM25359</th>\n",
" <th>GSM25360</th>\n",
" <th>GSM25361</th>\n",
" <th>GSM25377</th>\n",
" <th>...</th>\n",
" <th>GSM136719</th>\n",
" <th>GSM136720</th>\n",
" <th>GSM136721</th>\n",
" <th>GSM136722</th>\n",
" <th>GSM136723</th>\n",
" <th>GSM136724</th>\n",
" <th>GSM136725</th>\n",
" <th>GSM136726</th>\n",
" <th>GSM136727</th>\n",
" <th>GSM136729</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>40</th>\n",
" <td>1007_s_at</td>\n",
" <td>329.9</td>\n",
" <td>408.1</td>\n",
" <td>258.2</td>\n",
" <td>262</td>\n",
" <td>299.2</td>\n",
" <td>318.1</td>\n",
" <td>338.7</td>\n",
" <td>333.2</td>\n",
" <td>419.5</td>\n",
" <td>...</td>\n",
" <td>325.301</td>\n",
" <td>342.899</td>\n",
" <td>533.498</td>\n",
" <td>384.7</td>\n",
" <td>394.899</td>\n",
" <td>417.699</td>\n",
" <td>380.6</td>\n",
" <td>422.8</td>\n",
" <td>232.401</td>\n",
" <td>248.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>41</th>\n",
" <td>1053_at</td>\n",
" <td>419.1</td>\n",
" <td>378.6</td>\n",
" <td>359.9</td>\n",
" <td>612.1</td>\n",
" <td>297.4</td>\n",
" <td>305.7</td>\n",
" <td>315</td>\n",
" <td>363.8</td>\n",
" <td>424.8</td>\n",
" <td>...</td>\n",
" <td>345.301</td>\n",
" <td>537.001</td>\n",