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Created August 25, 2016 08:44
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pandas example for GEO
Raw
gistfile1.txt
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"%matplotlib inline\n",
"import numpy as np\n",
"import pandas as pd\n",
"import matplotlib.pyplot as plt"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"!Series_title\t\"Allelic Differences Account for Gene Expression Differences Among Population.\"\r\n",
"!Series_geo_accession\t\"GSE5859\"\r\n",
"!Series_status\t\"Public on Jan 07 2007\"\r\n",
"!Series_submission_date\t\"Sep 18 2006\"\r\n",
"!Series_last_update_date\t\"Jul 08 2016\"\r\n",
"!Series_pubmed_id\t\"17206142\"\r\n",
"!Series_summary\t\"Expression level of genes in lymphoblasts from individuals in three HapMap populations (CEU, CHB, JPT) were compared. More than 1,000 genes were found to be significantly different (Pc<0.05) in mean expression level between the CEU and CHB+JPT samples.\"\r\n",
"!Series_summary\t\"Keywords: Comparison of Gene Expression Profiles from Lymphoblastoid cells\"\r\n",
"!Series_overall_design\t\"Gene expression analysis using Affymetrix Human Focus arrays; comparison of expression levels of genes by t-test.\"\r\n",
"!Series_type\t\"Expression profiling by array\"\r\n",
"!Series_contributor\t\"Richard,S,Spielman\"\r\n",
"!Series_contributor\t\"Laurel,A,Bastone\"\r\n",
"!Series_contributor\t\"Joshua,B,Burdick\"\r\n",
"!Series_contributor\t\"Michael,P,Morley\"\r\n",
"!Series_contributor\t\"Warren,J,Ewens\"\r\n",
"!Series_contributor\t\"Vivian,G,Cheung\"\r\n",
"!Series_sample_id\t\"GSM25349 GSM25350 GSM25356 GSM25357 GSM25358 GSM25359 GSM25360 GSM25361 GSM25377 GSM25378 GSM25385 GSM25386 GSM25399 GSM25400 GSM25401 GSM25402 GSM25409 GSM25410 GSM25426 GSM25427 GSM25479 GSM25480 GSM25481 GSM25482 GSM25524 GSM25525 GSM25526 GSM25527 GSM25528 GSM25529 GSM25530 GSM25531 GSM25540 GSM25541 GSM25542 GSM25543 GSM25548 GSM25549 GSM25550 GSM25551 GSM25552 GSM25553 GSM25561 GSM25562 GSM25563 GSM25564 GSM25565 GSM25566 GSM25568 GSM25569 GSM25570 GSM25571 GSM25578 GSM25579 GSM25580 GSM25581 GSM25624 GSM25625 GSM25626 GSM25627 GSM25628 GSM25629 GSM25630 GSM25631 GSM25632 GSM25633 GSM25634 GSM25635 GSM25656 GSM25657 GSM25658 GSM25659 GSM25660 GSM25661 GSM25662 GSM25663 GSM25680 GSM25681 GSM25682 GSM25683 GSM25684 GSM25685 GSM25686 GSM25687 GSM48650 GSM48651 GSM48652 GSM48653 GSM48654 GSM48655 GSM48656 GSM48657 GSM48658 GSM48660 GSM48661 GSM48662 GSM48663 GSM48664 GSM48665 GSM136441 GSM136442 GSM136443 GSM136444 GSM136445 GSM136506 GSM136507 GSM136508 GSM136509 GSM136510 GSM136514 GSM136515 GSM136516 GSM136517 GSM136518 GSM136520 GSM136521 GSM136522 GSM136523 GSM136524 GSM136528 GSM136529 GSM136530 GSM136531 GSM136532 GSM136534 GSM136535 GSM136536 GSM136537 GSM136538 GSM136539 GSM136540 GSM136541 GSM136542 GSM136543 GSM136544 GSM136545 GSM136546 GSM136547 GSM136548 GSM136549 GSM136550 GSM136551 GSM136552 GSM136553 GSM136555 GSM136556 GSM136557 GSM136558 GSM136559 GSM136563 GSM136564 GSM136565 GSM136566 GSM136567 GSM136568 GSM136569 GSM136570 GSM136571 GSM136572 GSM136573 GSM136574 GSM136575 GSM136576 GSM136577 GSM136658 GSM136659 GSM136660 GSM136661 GSM136662 GSM136663 GSM136664 GSM136665 GSM136666 GSM136667 GSM136668 GSM136669 GSM136670 GSM136671 GSM136672 GSM136673 GSM136674 GSM136675 GSM136676 GSM136677 GSM136705 GSM136706 GSM136707 GSM136708 GSM136709 GSM136710 GSM136711 GSM136712 GSM136713 GSM136714 GSM136715 GSM136716 GSM136717 GSM136718 GSM136719 GSM136720 GSM136721 GSM136722 GSM136723 GSM136724 GSM136725 GSM136726 GSM136727 GSM136729 \"\r\n",
"!Series_contact_name\t\"Michael,Patrick,Morley\"\r\n",
"!Series_contact_email\t\"mmorley@mail.med.upenn.edu\"\r\n",
"!Series_contact_phone\t\"215-898-2026\"\r\n",
"!Series_contact_department\t\"Penn Cardiovascular Institute\"\r\n",
"!Series_contact_institute\t\"Perelman School of Medicine at the University of Pennsylvania\"\r\n",
"!Series_contact_address\t\"3400 Civic Center Blvd, Bldg 421\"\r\n",
"!Series_contact_city\t\"Philadelphia\"\r\n",
"!Series_contact_state\t\"PA\"\r\n",
"!Series_contact_zip/postal_code\t\"19104\"\r\n",
"!Series_contact_country\t\"USA\"\r\n",
"!Series_supplementary_file\t\"ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/supplementary/series/GSE5859/GSE5859_RAW.tar\"\r\n",
"!Series_platform_id\t\"GPL201\"\r\n",
"!Series_platform_taxid\t\"9606\"\r\n",
"!Series_sample_taxid\t\"9606\"\r\n",
"!Series_relation\t\"BioProject: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA97265\"\r\n",
"\r\n",
"!Sample_title\t\"GM06985_rep1\"\t\"GM06985_rep2\"\t\"GM06993_rep1\"\t\"GM06993_rep2\"\t\"GM06994_rep1\"\t\"GM06994_rep2\"\t\"GM07000_rep1\"\t\"GM07000_rep2\"\t\"GM07022_rep1\"\t\"GM07022_rep2\"\t\"GM07034_rep1\"\t\"GM07034_rep2\"\t\"GM07055_rep1\"\t\"GM07055_rep2\"\t\"GM07056_rep1\"\t\"GM07056_rep2\"\t\"GM07345_rep1\"\t\"GM07345_rep2\"\t\"GM07357_rep1\"\t\"GM07357_rep2\"\t\"GM11881_rep1\"\t\"GM11881_rep2\"\t\"GM11882_rep1\"\t\"GM11882_rep2\"\t\"GM11992_rep1\"\t\"GM11992_rep2\"\t\"GM11993_rep1\"\t\"GM11993_rep2\"\t\"GM11994_rep1\"\t\"GM11994_rep2\"\t\"GM11995_rep1\"\t\"GM11995_rep2\"\t\"GM12043_rep1\"\t\"GM12043_rep2\"\t\"GM12044_rep1\"\t\"GM12044_rep2\"\t\"GM12144_rep1\"\t\"GM12144_rep2\"\t\"GM12145_rep1\"\t\"GM12145_rep2\"\t\"GM12146_rep1\"\t\"GM12146_rep2\"\t\"GM12154_rep1\"\t\"GM12154_rep2\"\t\"GM12155_rep1\"\t\"GM12155_rep2\"\t\"GM12156_rep1\"\t\"GM12156_rep2\"\t\"GM12236_rep1\"\t\"GM12236_rep2\"\t\"GM12239_rep1\"\t\"GM12239_rep2\"\t\"GM12248_rep1\"\t\"GM12248_rep2\"\t\"GM12249_rep1\"\t\"GM12249_rep2\"\t\"GM12750_rep1\"\t\"GM12750_rep2\"\t\"GM12751_rep1\"\t\"GM12751_rep2\"\t\"GM12760_rep1\"\t\"GM12760_rep2\"\t\"GM12761_rep1\"\t\"GM12761_rep2\"\t\"GM12762_rep1\"\t\"GM12762_rep2\"\t\"GM12763_rep1\"\t\"GM12763_rep2\"\t\"GM12812_rep1\"\t\"GM12812_rep2\"\t\"GM12813_rep1\"\t\"GM12813_rep2\"\t\"GM12814_rep1\"\t\"GM12814_rep2\"\t\"GM12815_rep1\"\t\"GM12815_rep2\"\t\"GM12872_rep1\"\t\"GM12872_rep2\"\t\"GM12873_rep1\"\t\"GM12873_rep2\"\t\"GM12874_rep1\"\t\"GM12874_rep2\"\t\"GM12875_rep1\"\t\"GM12875_rep2\"\t\"GM11829_rep1\"\t\"GM11830_rep1\"\t\"GM11831_rep1\"\t\"GM11832_rep1\"\t\"GM11839_rep1\"\t\"GM12003_rep1\"\t\"GM12004_rep1\"\t\"GM12005_rep1\"\t\"GM12006_rep1\"\t\"GM12057_rep1\"\t\"GM12234_rep1\"\t\"GM12716_rep1\"\t\"GM12717_rep1\"\t\"GM12891_rep1\"\t\"GM12892_rep1\"\t\"GM18956\"\t\"GM18942\"\t\"GM18944\"\t\"GM18945\"\t\"GM18949\"\t\"GM18952\"\t\"GM18943\"\t\"GM18947\"\t\"GM18948\"\t\"GM18953\"\t\"GM18961\"\t\"GM18970\"\t\"GM18540\"\t\"GM18542\"\t\"GM18550\"\t\"GM18552\"\t\"GM18555\"\t\"GM18959\"\t\"GM18960\"\t\"GM18965\"\t\"GM18966\"\t\"GM18967\"\t\"GM18968\"\t\"GM18971\"\t\"GM18972\"\t\"GM18973\"\t\"GM18974\"\t\"GM18975\"\t\"GM18976\"\t\"GM18978\"\t\"GM18980\"\t\"GM18969\"\t\"GM18987\"\t\"GM18990\"\t\"GM18991\"\t\"GM18992\"\t\"GM18995\"\t\"GM19005\"\t\"GM18524\"\t\"GM18529\"\t\"GM18532\"\t\"GM18547\"\t\"GM18561\"\t\"GM18994\"\t\"GM18526\"\t\"GM18537\"\t\"GM18593\"\t\"GM18603\"\t\"GM18605\"\t\"GM18545\"\t\"GM18558\"\t\"GM18563\"\t\"GM18566\"\t\"GM18577\"\t\"GM18582\"\t\"GM18592\"\t\"GM18999\"\t\"GM19000\"\t\"GM19003\"\t\"GM19007\"\t\"GM18573\"\t\"GM18579\"\t\"GM18576\"\t\"GM18964\"\t\"GM18981\"\t\"GM18622\"\t\"GM18594\"\t\"GM18611\"\t\"GM18564\"\t\"GM18612\"\t\"GM18621\"\t\"GM18623\"\t\"GM18624\"\t\"GM18632\"\t\"GM18635\"\t\"GM18636\"\t\"GM18637\"\t\"GM18620\"\t\"GM18562\"\t\"GM18570\"\t\"GM18608\"\t\"GM17733\"\t\"GM17734\"\t\"GM17735\"\t\"GM17736\"\t\"GM17737\"\t\"GM17738\"\t\"GM17739\"\t\"GM17740\"\t\"GM17742\"\t\"GM17741\"\t\"GM17743\"\t\"GM17744\"\t\"GM17745\"\t\"GM17746\"\t\"GM17747\"\t\"GM17749\"\t\"GM17752\"\t\"GM17753\"\t\"GM17754\"\t\"GM17755\"\t\"GM17756\"\t\"GM17757\"\t\"GM17759\"\t\"GM17761\"\t\"GM11840\"\t\"GM12056\"\t\"GM12264\"\t\"GM18940\"\r\n",
"!Sample_geo_accession\t\"GSM25349\"\t\"GSM25350\"\t\"GSM25356\"\t\"GSM25357\"\t\"GSM25358\"\t\"GSM25359\"\t\"GSM25360\"\t\"GSM25361\"\t\"GSM25377\"\t\"GSM25378\"\t\"GSM25385\"\t\"GSM25386\"\t\"GSM25399\"\t\"GSM25400\"\t\"GSM25401\"\t\"GSM25402\"\t\"GSM25409\"\t\"GSM25410\"\t\"GSM25426\"\t\"GSM25427\"\t\"GSM25479\"\t\"GSM25480\"\t\"GSM25481\"\t\"GSM25482\"\t\"GSM25524\"\t\"GSM25525\"\t\"GSM25526\"\t\"GSM25527\"\t\"GSM25528\"\t\"GSM25529\"\t\"GSM25530\"\t\"GSM25531\"\t\"GSM25540\"\t\"GSM25541\"\t\"GSM25542\"\t\"GSM25543\"\t\"GSM25548\"\t\"GSM25549\"\t\"GSM25550\"\t\"GSM25551\"\t\"GSM25552\"\t\"GSM25553\"\t\"GSM25561\"\t\"GSM25562\"\t\"GSM25563\"\t\"GSM25564\"\t\"GSM25565\"\t\"GSM25566\"\t\"GSM25568\"\t\"GSM25569\"\t\"GSM25570\"\t\"GSM25571\"\t\"GSM25578\"\t\"GSM25579\"\t\"GSM25580\"\t\"GSM25581\"\t\"GSM25624\"\t\"GSM25625\"\t\"GSM25626\"\t\"GSM25627\"\t\"GSM25628\"\t\"GSM25629\"\t\"GSM25630\"\t\"GSM25631\"\t\"GSM25632\"\t\"GSM25633\"\t\"GSM25634\"\t\"GSM25635\"\t\"GSM25656\"\t\"GSM25657\"\t\"GSM25658\"\t\"GSM25659\"\t\"GSM25660\"\t\"GSM25661\"\t\"GSM25662\"\t\"GSM25663\"\t\"GSM25680\"\t\"GSM25681\"\t\"GSM25682\"\t\"GSM25683\"\t\"GSM25684\"\t\"GSM25685\"\t\"GSM25686\"\t\"GSM25687\"\t\"GSM48650\"\t\"GSM48651\"\t\"GSM48652\"\t\"GSM48653\"\t\"GSM48654\"\t\"GSM48655\"\t\"GSM48656\"\t\"GSM48657\"\t\"GSM48658\"\t\"GSM48660\"\t\"GSM48661\"\t\"GSM48662\"\t\"GSM48663\"\t\"GSM48664\"\t\"GSM48665\"\t\"GSM136441\"\t\"GSM136442\"\t\"GSM136443\"\t\"GSM136444\"\t\"GSM136445\"\t\"GSM136506\"\t\"GSM136507\"\t\"GSM136508\"\t\"GSM136509\"\t\"GSM136510\"\t\"GSM136514\"\t\"GSM136515\"\t\"GSM136516\"\t\"GSM136517\"\t\"GSM136518\"\t\"GSM136520\"\t\"GSM136521\"\t\"GSM136522\"\t\"GSM136523\"\t\"GSM136524\"\t\"GSM136528\"\t\"GSM136529\"\t\"GSM136530\"\t\"GSM136531\"\t\"GSM136532\"\t\"GSM136534\"\t\"GSM136535\"\t\"GSM136536\"\t\"GSM136537\"\t\"GSM136538\"\t\"GSM136539\"\t\"GSM136540\"\t\"GSM136541\"\t\"GSM136542\"\t\"GSM136543\"\t\"GSM136544\"\t\"GSM136545\"\t\"GSM136546\"\t\"GSM136547\"\t\"GSM136548\"\t\"GSM136549\"\t\"GSM136550\"\t\"GSM136551\"\t\"GSM136552\"\t\"GSM136553\"\t\"GSM136555\"\t\"GSM136556\"\t\"GSM136557\"\t\"GSM136558\"\t\"GSM136559\"\t\"GSM136563\"\t\"GSM136564\"\t\"GSM136565\"\t\"GSM136566\"\t\"GSM136567\"\t\"GSM136568\"\t\"GSM136569\"\t\"GSM136570\"\t\"GSM136571\"\t\"GSM136572\"\t\"GSM136573\"\t\"GSM136574\"\t\"GSM136575\"\t\"GSM136576\"\t\"GSM136577\"\t\"GSM136658\"\t\"GSM136659\"\t\"GSM136660\"\t\"GSM136661\"\t\"GSM136662\"\t\"GSM136663\"\t\"GSM136664\"\t\"GSM136665\"\t\"GSM136666\"\t\"GSM136667\"\t\"GSM136668\"\t\"GSM136669\"\t\"GSM136670\"\t\"GSM136671\"\t\"GSM136672\"\t\"GSM136673\"\t\"GSM136674\"\t\"GSM136675\"\t\"GSM136676\"\t\"GSM136677\"\t\"GSM136705\"\t\"GSM136706\"\t\"GSM136707\"\t\"GSM136708\"\t\"GSM136709\"\t\"GSM136710\"\t\"GSM136711\"\t\"GSM136712\"\t\"GSM136713\"\t\"GSM136714\"\t\"GSM136715\"\t\"GSM136716\"\t\"GSM136717\"\t\"GSM136718\"\t\"GSM136719\"\t\"GSM136720\"\t\"GSM136721\"\t\"GSM136722\"\t\"GSM136723\"\t\"GSM136724\"\t\"GSM136725\"\t\"GSM136726\"\t\"GSM136727\"\t\"GSM136729\"\r\n"
]
}
],
"source": [
"!head -n 35 GSE5859_series_matrix.txt "
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": false,
"scrolled": true
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>!Sample_geo_accession</th>\n",
" <th>GSM25349</th>\n",
" <th>GSM25350</th>\n",
" <th>GSM25356</th>\n",
" <th>GSM25357</th>\n",
" <th>GSM25358</th>\n",
" <th>GSM25359</th>\n",
" <th>GSM25360</th>\n",
" <th>GSM25361</th>\n",
" <th>GSM25377</th>\n",
" <th>...</th>\n",
" <th>GSM136719</th>\n",
" <th>GSM136720</th>\n",
" <th>GSM136721</th>\n",
" <th>GSM136722</th>\n",
" <th>GSM136723</th>\n",
" <th>GSM136724</th>\n",
" <th>GSM136725</th>\n",
" <th>GSM136726</th>\n",
" <th>GSM136727</th>\n",
" <th>GSM136729</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>!Sample_status</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>Public on Aug 12 2004</td>\n",
" <td>...</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" <td>Public on Jan 07 2007</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>!Sample_submission_date</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>Jun 17 2004</td>\n",
" <td>...</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" <td>Sep 18 2006</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>!Sample_last_update_date</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>Nov 30 2005</td>\n",
" <td>...</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" <td>Jan 04 2007</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>!Sample_type</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>...</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" <td>RNA</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>!Sample_channel_count</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>...</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>!Sample_source_name_ch1</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>Lymphoblastoid cell line</td>\n",
" <td>...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" <td>lymphoblastoid cell lines from the CEU, CHB an...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>!Sample_organism_ch1</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>...</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" <td>Homo sapiens</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>Coriell cell line repository identifier: GM06985</td>\n",
" <td>Coriell cell line repository identifier: GM06985</td>\n",
" <td>Coriell cell line repository identifier: GM06993</td>\n",
" <td>Coriell cell line repository identifier: GM06993</td>\n",
" <td>Coriell cell line repository identifier: GM06994</td>\n",
" <td>Coriell cell line repository identifier: GM06994</td>\n",
" <td>Coriell cell line repository identifier: GM07000</td>\n",
" <td>Coriell cell line repository identifier: GM07000</td>\n",
" <td>Coriell cell line repository identifier: GM07022</td>\n",
" <td>...</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" <td>lymphoblastoid cell line</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>http://locus.umdnj.edu/nigms/nigms_cgi/display...</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>!Sample_characteristics_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>Coriell Cell Repositories</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>!Sample_biomaterial_provider_ch1</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>Coriell</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>!Sample_molecule_ch1</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>...</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" <td>total RNA</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>!Sample_label_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" <td>biotin</td>\n",
" </tr>\n",
" <tr>\n",
" <th>18</th>\n",
" <td>!Sample_label_protocol_ch1</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>19</th>\n",
" <td>!Sample_taxid_ch1</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>...</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" <td>9606</td>\n",
" </tr>\n",
" <tr>\n",
" <th>20</th>\n",
" <td>!Sample_hyb_protocol</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>21</th>\n",
" <td>!Sample_scan_protocol</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" <td>standard Affymetrix procedures</td>\n",
" </tr>\n",
" <tr>\n",
" <th>22</th>\n",
" <td>!Sample_description</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>Sample description = RNA was extracted from ly...</td>\n",
" <td>...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" <td>The cells were grown at a density of 5 x 105 c...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>23</th>\n",
" <td>!Sample_data_processing</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" <td>Affymetrix Microarray Suite version 5.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>24</th>\n",
" <td>!Sample_platform_id</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>...</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" <td>GPL201</td>\n",
" </tr>\n",
" <tr>\n",
" <th>25</th>\n",
" <td>!Sample_contact_name</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>...</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" <td>Michael,Patrick,Morley</td>\n",
" </tr>\n",
" <tr>\n",
" <th>26</th>\n",
" <td>!Sample_contact_email</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>...</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" <td>mmorley@mail.med.upenn.edu</td>\n",
" </tr>\n",
" <tr>\n",
" <th>27</th>\n",
" <td>!Sample_contact_phone</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>...</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" <td>215-898-2026</td>\n",
" </tr>\n",
" <tr>\n",
" <th>28</th>\n",
" <td>!Sample_contact_department</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>...</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" <td>Penn Cardiovascular Institute</td>\n",
" </tr>\n",
" <tr>\n",
" <th>29</th>\n",
" <td>!Sample_contact_institute</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" <td>Perelman School of Medicine at the University ...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8804</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MA_at</td>\n",
" <td>2119.2</td>\n",
" <td>1852.2</td>\n",
" <td>799.8</td>\n",
" <td>1011.7</td>\n",
" <td>600.1</td>\n",
" <td>588.7</td>\n",
" <td>676.9</td>\n",
" <td>1039.7</td>\n",
" <td>1109.1</td>\n",
" <td>...</td>\n",
" <td>3289.38</td>\n",
" <td>1830.6</td>\n",
" <td>3108.71</td>\n",
" <td>3062.72</td>\n",
" <td>2792.42</td>\n",
" <td>2550.21</td>\n",
" <td>1969.34</td>\n",
" <td>2991.8</td>\n",
" <td>1639.34</td>\n",
" <td>1781.9</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8805</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MB_at</td>\n",
" <td>998.9</td>\n",
" <td>645.2</td>\n",
" <td>454.4</td>\n",
" <td>411.2</td>\n",
" <td>363.3</td>\n",
" <td>327.2</td>\n",
" <td>301.3</td>\n",
" <td>272.3</td>\n",
" <td>581.4</td>\n",
" <td>...</td>\n",
" <td>1838.74</td>\n",
" <td>698.4</td>\n",
" <td>1665.11</td>\n",
" <td>1481.87</td>\n",
" <td>1465.12</td>\n",
" <td>1281.93</td>\n",
" <td>1191.78</td>\n",
" <td>2031.46</td>\n",
" <td>734.099</td>\n",
" <td>1099.17</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8806</th>\n",
" <td>AFFX-HUMRGE/M10098_3_at</td>\n",
" <td>45.7</td>\n",
" <td>75.2</td>\n",
" <td>31</td>\n",
" <td>353.5</td>\n",
" <td>108.4</td>\n",
" <td>287.9</td>\n",
" <td>91.7</td>\n",
" <td>38.6</td>\n",
" <td>21.4</td>\n",
" <td>...</td>\n",
" <td>76.8999</td>\n",
" <td>85.9002</td>\n",
" <td>38.3999</td>\n",
" <td>113.3</td>\n",
" <td>57.4</td>\n",
" <td>175.101</td>\n",
" <td>53.4001</td>\n",
" <td>13.4</td>\n",
" <td>16</td>\n",
" <td>77.9999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8807</th>\n",
" <td>AFFX-HUMRGE/M10098_5_at</td>\n",
" <td>11.4</td>\n",
" <td>109.8</td>\n",
" <td>77.6</td>\n",
" <td>99.2</td>\n",
" <td>75.4</td>\n",
" <td>134.5</td>\n",
" <td>8.9</td>\n",
" <td>9.8</td>\n",
" <td>28.1</td>\n",
" <td>...</td>\n",
" <td>28.5</td>\n",
" <td>5.69999</td>\n",
" <td>11.1</td>\n",
" <td>23.4001</td>\n",
" <td>4.79999</td>\n",
" <td>73.6999</td>\n",
" <td>5.10001</td>\n",
" <td>3.2</td>\n",
" <td>25.5001</td>\n",
" <td>4.39999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8808</th>\n",
" <td>AFFX-HUMRGE/M10098_M_at</td>\n",
" <td>56.1</td>\n",
" <td>57.3</td>\n",
" <td>104.8</td>\n",
" <td>201.9</td>\n",
" <td>71.8</td>\n",
" <td>189</td>\n",
" <td>39.7</td>\n",
" <td>13</td>\n",
" <td>63</td>\n",
" <td>...</td>\n",
" <td>30.4</td>\n",
" <td>51.5</td>\n",
" <td>32.9999</td>\n",
" <td>28.7</td>\n",
" <td>23.9</td>\n",
" <td>122.5</td>\n",
" <td>6.5</td>\n",
" <td>34.8999</td>\n",
" <td>5.60001</td>\n",
" <td>7.79998</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8809</th>\n",
" <td>AFFX-M27830_3_at</td>\n",
" <td>42.1</td>\n",
" <td>183.5</td>\n",
" <td>41.3</td>\n",
" <td>51.9</td>\n",
" <td>71.1</td>\n",
" <td>24.6</td>\n",
" <td>26.1</td>\n",
" <td>34.6</td>\n",
" <td>50.8</td>\n",
" <td>...</td>\n",
" <td>52.9002</td>\n",
" <td>50.2002</td>\n",
" <td>39.9001</td>\n",
" <td>103.4</td>\n",
" <td>47.8</td>\n",
" <td>120</td>\n",
" <td>38.9999</td>\n",
" <td>42.9001</td>\n",
" <td>31.0001</td>\n",
" <td>43.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8810</th>\n",
" <td>AFFX-M27830_5_at</td>\n",
" <td>203</td>\n",
" <td>132.5</td>\n",
" <td>223.7</td>\n",
" <td>214.5</td>\n",
" <td>175.2</td>\n",
" <td>384.5</td>\n",
" <td>237.7</td>\n",
" <td>200.5</td>\n",
" <td>137.5</td>\n",
" <td>...</td>\n",
" <td>151.5</td>\n",
" <td>166.5</td>\n",
" <td>171</td>\n",
" <td>184</td>\n",
" <td>131.9</td>\n",
" <td>267.201</td>\n",
" <td>41.7001</td>\n",
" <td>57.8999</td>\n",
" <td>179.7</td>\n",
" <td>236.201</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8811</th>\n",
" <td>AFFX-M27830_M_at</td>\n",
" <td>1332</td>\n",
" <td>1404.2</td>\n",
" <td>864.7</td>\n",
" <td>459.7</td>\n",
" <td>942.6</td>\n",
" <td>1549.3</td>\n",
" <td>1923.3</td>\n",
" <td>1180.4</td>\n",
" <td>461.4</td>\n",
" <td>...</td>\n",
" <td>464.701</td>\n",
" <td>623.001</td>\n",
" <td>402.7</td>\n",
" <td>552.599</td>\n",
" <td>367.801</td>\n",
" <td>731.701</td>\n",
" <td>154.1</td>\n",
" <td>94.0998</td>\n",
" <td>414.699</td>\n",
" <td>577.001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8812</th>\n",
" <td>AFFX-r2-Bs-dap-3_at</td>\n",
" <td>15.3</td>\n",
" <td>2.4</td>\n",
" <td>30.6</td>\n",
" <td>5.9</td>\n",
" <td>3.5</td>\n",
" <td>7.4</td>\n",
" <td>9.7</td>\n",
" <td>3.3</td>\n",
" <td>60.5</td>\n",
" <td>...</td>\n",
" <td>5.49999</td>\n",
" <td>1.7</td>\n",
" <td>1.5</td>\n",
" <td>8</td>\n",
" <td>2.80001</td>\n",
" <td>10.2</td>\n",
" <td>3.39999</td>\n",
" <td>1.5</td>\n",
" <td>1.1</td>\n",
" <td>1.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8813</th>\n",
" <td>AFFX-r2-Bs-dap-5_at</td>\n",
" <td>3.5</td>\n",
" <td>7.1</td>\n",
" <td>3.9</td>\n",
" <td>3.9</td>\n",
" <td>1.3</td>\n",
" <td>4.5</td>\n",
" <td>27.3</td>\n",
" <td>8.1</td>\n",
" <td>4.4</td>\n",
" <td>...</td>\n",
" <td>3.2</td>\n",
" <td>10.2</td>\n",
" <td>4.39999</td>\n",
" <td>2.39999</td>\n",
" <td>1.7</td>\n",
" <td>5.10001</td>\n",
" <td>3.70001</td>\n",
" <td>2.89999</td>\n",
" <td>13.7</td>\n",
" <td>2.5</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8814</th>\n",
" <td>AFFX-r2-Bs-dap-M_at</td>\n",
" <td>8.5</td>\n",
" <td>3.3</td>\n",
" <td>2.1</td>\n",
" <td>53.3</td>\n",
" <td>3.2</td>\n",
" <td>17.2</td>\n",
" <td>25.6</td>\n",
" <td>3.2</td>\n",
" <td>3.4</td>\n",
" <td>...</td>\n",
" <td>10.4</td>\n",
" <td>0.7</td>\n",
" <td>0.8</td>\n",
" <td>1.1</td>\n",
" <td>2.19999</td>\n",
" <td>5.79999</td>\n",
" <td>0.299999</td>\n",
" <td>1.3</td>\n",
" <td>3.1</td>\n",
" <td>1.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8815</th>\n",
" <td>AFFX-r2-Bs-lys-3_at</td>\n",
" <td>47.1</td>\n",
" <td>55.3</td>\n",
" <td>11.9</td>\n",
" <td>49.1</td>\n",
" <td>17.6</td>\n",
" <td>9.8</td>\n",
" <td>5.9</td>\n",
" <td>40.3</td>\n",
" <td>13.1</td>\n",
" <td>...</td>\n",
" <td>20.9</td>\n",
" <td>11.5</td>\n",
" <td>16.3</td>\n",
" <td>15.1</td>\n",
" <td>32</td>\n",
" <td>20.0999</td>\n",
" <td>9.10002</td>\n",
" <td>27.6001</td>\n",
" <td>10.1</td>\n",
" <td>15.8999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8816</th>\n",
" <td>AFFX-r2-Bs-lys-5_at</td>\n",
" <td>8.2</td>\n",
" <td>13.3</td>\n",
" <td>1.9</td>\n",
" <td>26.6</td>\n",
" <td>6.9</td>\n",
" <td>2</td>\n",
" <td>16.4</td>\n",
" <td>2.7</td>\n",
" <td>5.4</td>\n",
" <td>...</td>\n",
" <td>0.6</td>\n",
" <td>3.70001</td>\n",
" <td>2.99999</td>\n",
" <td>23.8</td>\n",
" <td>1.6</td>\n",
" <td>1.6</td>\n",
" <td>8.4</td>\n",
" <td>1.4</td>\n",
" <td>1.9</td>\n",
" <td>1.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8817</th>\n",
" <td>AFFX-r2-Bs-lys-M_at</td>\n",
" <td>5.1</td>\n",
" <td>39.4</td>\n",
" <td>35.7</td>\n",
" <td>43.3</td>\n",
" <td>18</td>\n",
" <td>31.7</td>\n",
" <td>17.9</td>\n",
" <td>19</td>\n",
" <td>63.5</td>\n",
" <td>...</td>\n",
" <td>4.30001</td>\n",
" <td>31.8999</td>\n",
" <td>1.1</td>\n",
" <td>4.79999</td>\n",
" <td>18.5</td>\n",
" <td>6.1</td>\n",
" <td>1.4</td>\n",
" <td>25.0001</td>\n",
" <td>6.60002</td>\n",
" <td>32.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8818</th>\n",
" <td>AFFX-r2-Bs-phe-3_at</td>\n",
" <td>77.1</td>\n",
" <td>61.4</td>\n",
" <td>9.2</td>\n",
" <td>79.6</td>\n",
" <td>45.3</td>\n",
" <td>27.3</td>\n",
" <td>16.6</td>\n",
" <td>27.3</td>\n",
" <td>43.7</td>\n",
" <td>...</td>\n",
" <td>57.2999</td>\n",
" <td>35.1</td>\n",
" <td>44</td>\n",
" <td>27.3</td>\n",
" <td>55.5002</td>\n",
" <td>47.8999</td>\n",
" <td>5.00001</td>\n",
" <td>14.5</td>\n",
" <td>7.89999</td>\n",
" <td>49.4</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8819</th>\n",
" <td>AFFX-r2-Bs-phe-5_at</td>\n",
" <td>6.4</td>\n",
" <td>6.7</td>\n",
" <td>1.8</td>\n",
" <td>1.3</td>\n",
" <td>14.8</td>\n",
" <td>4.5</td>\n",
" <td>16.5</td>\n",
" <td>3.3</td>\n",
" <td>47.6</td>\n",
" <td>...</td>\n",
" <td>10.1</td>\n",
" <td>13.6</td>\n",
" <td>5.49999</td>\n",
" <td>1.5</td>\n",
" <td>13.6</td>\n",
" <td>9.10002</td>\n",
" <td>24.4</td>\n",
" <td>15.5</td>\n",
" <td>3.70001</td>\n",
" <td>1.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8820</th>\n",
" <td>AFFX-r2-Bs-phe-M_at</td>\n",
" <td>10</td>\n",
" <td>5.8</td>\n",
" <td>2.8</td>\n",
" <td>10.2</td>\n",
" <td>1.5</td>\n",
" <td>40</td>\n",
" <td>39</td>\n",
" <td>57.5</td>\n",
" <td>61.6</td>\n",
" <td>...</td>\n",
" <td>1.1</td>\n",
" <td>2.89999</td>\n",
" <td>2.19999</td>\n",
" <td>3.2</td>\n",
" <td>9.50002</td>\n",
" <td>12.7</td>\n",
" <td>5.29999</td>\n",
" <td>21.4</td>\n",
" <td>3.39999</td>\n",
" <td>24.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8821</th>\n",
" <td>AFFX-r2-Bs-thr-3_s_at</td>\n",
" <td>12.2</td>\n",
" <td>9</td>\n",
" <td>4</td>\n",
" <td>11.3</td>\n",
" <td>3.4</td>\n",
" <td>3.6</td>\n",
" <td>3.5</td>\n",
" <td>6.3</td>\n",
" <td>14</td>\n",
" <td>...</td>\n",
" <td>7.30002</td>\n",
" <td>2.99999</td>\n",
" <td>4</td>\n",
" <td>24.2999</td>\n",
" <td>13.1</td>\n",
" <td>11.5</td>\n",
" <td>25.6</td>\n",
" <td>8.19998</td>\n",
" <td>19.9</td>\n",
" <td>5.19999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8822</th>\n",
" <td>AFFX-r2-Bs-thr-5_s_at</td>\n",
" <td>55.8</td>\n",
" <td>49.3</td>\n",
" <td>17.8</td>\n",
" <td>38.6</td>\n",
" <td>97.6</td>\n",
" <td>38.2</td>\n",
" <td>43.2</td>\n",
" <td>56.8</td>\n",
" <td>37.8</td>\n",
" <td>...</td>\n",
" <td>48.4999</td>\n",
" <td>76.0001</td>\n",
" <td>52.6</td>\n",
" <td>72.8002</td>\n",
" <td>61.7998</td>\n",
" <td>42.9999</td>\n",
" <td>31.5999</td>\n",
" <td>36.1001</td>\n",
" <td>60.4999</td>\n",
" <td>84.0002</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8823</th>\n",
" <td>AFFX-r2-Bs-thr-M_s_at</td>\n",
" <td>81.3</td>\n",
" <td>15.3</td>\n",
" <td>42.1</td>\n",
" <td>48.2</td>\n",
" <td>60.2</td>\n",
" <td>8</td>\n",
" <td>41.8</td>\n",
" <td>13.1</td>\n",
" <td>42</td>\n",
" <td>...</td>\n",
" <td>75.3001</td>\n",
" <td>15.1</td>\n",
" <td>12.2</td>\n",
" <td>47.8</td>\n",
" <td>51.6</td>\n",
" <td>62.6998</td>\n",
" <td>24.7</td>\n",
" <td>45.1001</td>\n",
" <td>42.0001</td>\n",
" <td>49.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8824</th>\n",
" <td>AFFX-r2-Ec-bioB-3_at</td>\n",
" <td>259</td>\n",
" <td>266.7</td>\n",
" <td>664.5</td>\n",
" <td>148.4</td>\n",
" <td>281.6</td>\n",
" <td>349.9</td>\n",
" <td>469.3</td>\n",
" <td>152.9</td>\n",
" <td>674.7</td>\n",
" <td>...</td>\n",
" <td>126.7</td>\n",
" <td>99.4997</td>\n",
" <td>76.7998</td>\n",
" <td>152.8</td>\n",
" <td>160.8</td>\n",
" <td>118.3</td>\n",
" <td>105.6</td>\n",
" <td>75.6999</td>\n",
" <td>120.3</td>\n",
" <td>203.401</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8825</th>\n",
" <td>AFFX-r2-Ec-bioB-5_at</td>\n",
" <td>286.5</td>\n",
" <td>185.5</td>\n",
" <td>572.9</td>\n",
" <td>123.2</td>\n",
" <td>251.6</td>\n",
" <td>360.4</td>\n",
" <td>432.7</td>\n",
" <td>183.5</td>\n",
" <td>677.2</td>\n",
" <td>...</td>\n",
" <td>162.3</td>\n",
" <td>96.9998</td>\n",
" <td>144.1</td>\n",
" <td>158.3</td>\n",
" <td>126.5</td>\n",
" <td>170.7</td>\n",
" <td>100.9</td>\n",
" <td>98.9001</td>\n",
" <td>105.7</td>\n",
" <td>160.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8826</th>\n",
" <td>AFFX-r2-Ec-bioB-M_at</td>\n",
" <td>370.1</td>\n",
" <td>250</td>\n",
" <td>806.4</td>\n",
" <td>136.9</td>\n",
" <td>332.3</td>\n",
" <td>452.4</td>\n",
" <td>543.7</td>\n",
" <td>168.4</td>\n",
" <td>932.8</td>\n",
" <td>...</td>\n",
" <td>180.9</td>\n",
" <td>130.9</td>\n",
" <td>155.9</td>\n",
" <td>198</td>\n",
" <td>140.3</td>\n",
" <td>212.3</td>\n",
" <td>121.6</td>\n",
" <td>76.7998</td>\n",
" <td>103.7</td>\n",
" <td>191.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8827</th>\n",
" <td>AFFX-r2-Ec-bioC-3_at</td>\n",
" <td>1353.8</td>\n",
" <td>1032.4</td>\n",
" <td>2539.7</td>\n",
" <td>646.1</td>\n",
" <td>1303.8</td>\n",
" <td>1805.9</td>\n",
" <td>2030.1</td>\n",
" <td>777.4</td>\n",
" <td>3466.8</td>\n",
" <td>...</td>\n",
" <td>478.299</td>\n",
" <td>549.7</td>\n",
" <td>516.201</td>\n",
" <td>586.2</td>\n",
" <td>528.2</td>\n",
" <td>700.499</td>\n",
" <td>379.201</td>\n",
" <td>262.499</td>\n",
" <td>460.399</td>\n",
" <td>637.902</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8828</th>\n",
" <td>AFFX-r2-Ec-bioC-5_at</td>\n",
" <td>1351.9</td>\n",
" <td>1015.2</td>\n",
" <td>2340.9</td>\n",
" <td>439.1</td>\n",
" <td>1097.6</td>\n",
" <td>1527.3</td>\n",
" <td>2097.1</td>\n",
" <td>696.4</td>\n",
" <td>3240.3</td>\n",
" <td>...</td>\n",
" <td>525.898</td>\n",
" <td>548.501</td>\n",
" <td>619.899</td>\n",
" <td>705.201</td>\n",
" <td>642.601</td>\n",
" <td>899.8</td>\n",
" <td>420.4</td>\n",
" <td>225.7</td>\n",
" <td>478.2</td>\n",
" <td>540.099</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8829</th>\n",
" <td>AFFX-r2-Ec-bioD-3_at</td>\n",
" <td>4456.8</td>\n",
" <td>3188.6</td>\n",
" <td>7993.1</td>\n",
" <td>1845.3</td>\n",
" <td>3985.8</td>\n",
" <td>4621.8</td>\n",
" <td>6283.4</td>\n",
" <td>2112.3</td>\n",
" <td>11969.8</td>\n",
" <td>...</td>\n",
" <td>7876.29</td>\n",
" <td>8033.43</td>\n",
" <td>7867.01</td>\n",
" <td>9144.57</td>\n",
" <td>7400.46</td>\n",
" <td>12090.6</td>\n",
" <td>6472.02</td>\n",
" <td>4458.06</td>\n",
" <td>8437.5</td>\n",
" <td>7842.51</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8830</th>\n",
" <td>AFFX-r2-Ec-bioD-5_at</td>\n",
" <td>3634.6</td>\n",
" <td>2813.5</td>\n",
" <td>6777.1</td>\n",
" <td>1340</td>\n",
" <td>3385.2</td>\n",
" <td>3853.5</td>\n",
" <td>5323.2</td>\n",
" <td>1690.8</td>\n",
" <td>8892.4</td>\n",
" <td>...</td>\n",
" <td>7070.52</td>\n",
" <td>7290.49</td>\n",
" <td>7330.01</td>\n",
" <td>7994.54</td>\n",
" <td>5365.14</td>\n",
" <td>10405.8</td>\n",
" <td>5860.87</td>\n",
" <td>3727.52</td>\n",
" <td>7137.98</td>\n",
" <td>7780.25</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8831</th>\n",
" <td>AFFX-r2-P1-cre-3_at</td>\n",
" <td>15062.4</td>\n",
" <td>10854.6</td>\n",
" <td>19995.1</td>\n",
" <td>6494</td>\n",
" <td>12609.5</td>\n",
" <td>15177.5</td>\n",
" <td>17468.9</td>\n",
" <td>6847.4</td>\n",
" <td>27817.6</td>\n",
" <td>...</td>\n",
" <td>19.3999</td>\n",
" <td>9.69997</td>\n",
" <td>38.6</td>\n",
" <td>9.10002</td>\n",
" <td>22.9001</td>\n",
" <td>8.29999</td>\n",
" <td>21.7</td>\n",
" <td>10.2</td>\n",
" <td>33.4001</td>\n",
" <td>11.7</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8832</th>\n",
" <td>AFFX-r2-P1-cre-5_at</td>\n",
" <td>17679.5</td>\n",
" <td>13325.2</td>\n",
" <td>20964.6</td>\n",
" <td>7346.5</td>\n",
" <td>15322.4</td>\n",
" <td>15541.8</td>\n",
" <td>24135.4</td>\n",
" <td>8037.3</td>\n",
" <td>32044.7</td>\n",
" <td>...</td>\n",
" <td>6.60002</td>\n",
" <td>2</td>\n",
" <td>12.5</td>\n",
" <td>4</td>\n",
" <td>12.7</td>\n",
" <td>7.89999</td>\n",
" <td>6.39999</td>\n",
" <td>4.59999</td>\n",
" <td>4.39999</td>\n",
" <td>0.8</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8833</th>\n",
" <td>!series_matrix_table_end</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>8834 rows × 209 columns</p>\n",
"</div>"
],
"text/plain": [
" !Sample_geo_accession \\\n",
"0 !Sample_status \n",
"1 !Sample_submission_date \n",
"2 !Sample_last_update_date \n",
"3 !Sample_type \n",
"4 !Sample_channel_count \n",
"5 !Sample_source_name_ch1 \n",
"6 !Sample_organism_ch1 \n",
"7 !Sample_characteristics_ch1 \n",
"8 !Sample_characteristics_ch1 \n",
"9 !Sample_characteristics_ch1 \n",
"10 !Sample_characteristics_ch1 \n",
"11 !Sample_characteristics_ch1 \n",
"12 !Sample_characteristics_ch1 \n",
"13 !Sample_biomaterial_provider_ch1 \n",
"14 !Sample_biomaterial_provider_ch1 \n",
"15 !Sample_biomaterial_provider_ch1 \n",
"16 !Sample_molecule_ch1 \n",
"17 !Sample_label_ch1 \n",
"18 !Sample_label_protocol_ch1 \n",
"19 !Sample_taxid_ch1 \n",
"20 !Sample_hyb_protocol \n",
"21 !Sample_scan_protocol \n",
"22 !Sample_description \n",
"23 !Sample_data_processing \n",
"24 !Sample_platform_id \n",
"25 !Sample_contact_name \n",
"26 !Sample_contact_email \n",
"27 !Sample_contact_phone \n",
"28 !Sample_contact_department \n",
"29 !Sample_contact_institute \n",
"... ... \n",
"8804 AFFX-HUMISGF3A/M97935_MA_at \n",
"8805 AFFX-HUMISGF3A/M97935_MB_at \n",
"8806 AFFX-HUMRGE/M10098_3_at \n",
"8807 AFFX-HUMRGE/M10098_5_at \n",
"8808 AFFX-HUMRGE/M10098_M_at \n",
"8809 AFFX-M27830_3_at \n",
"8810 AFFX-M27830_5_at \n",
"8811 AFFX-M27830_M_at \n",
"8812 AFFX-r2-Bs-dap-3_at \n",
"8813 AFFX-r2-Bs-dap-5_at \n",
"8814 AFFX-r2-Bs-dap-M_at \n",
"8815 AFFX-r2-Bs-lys-3_at \n",
"8816 AFFX-r2-Bs-lys-5_at \n",
"8817 AFFX-r2-Bs-lys-M_at \n",
"8818 AFFX-r2-Bs-phe-3_at \n",
"8819 AFFX-r2-Bs-phe-5_at \n",
"8820 AFFX-r2-Bs-phe-M_at \n",
"8821 AFFX-r2-Bs-thr-3_s_at \n",
"8822 AFFX-r2-Bs-thr-5_s_at \n",
"8823 AFFX-r2-Bs-thr-M_s_at \n",
"8824 AFFX-r2-Ec-bioB-3_at \n",
"8825 AFFX-r2-Ec-bioB-5_at \n",
"8826 AFFX-r2-Ec-bioB-M_at \n",
"8827 AFFX-r2-Ec-bioC-3_at \n",
"8828 AFFX-r2-Ec-bioC-5_at \n",
"8829 AFFX-r2-Ec-bioD-3_at \n",
"8830 AFFX-r2-Ec-bioD-5_at \n",
"8831 AFFX-r2-P1-cre-3_at \n",
"8832 AFFX-r2-P1-cre-5_at \n",
"8833 !series_matrix_table_end \n",
"\n",
" GSM25349 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06985 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2119.2 \n",
"8805 998.9 \n",
"8806 45.7 \n",
"8807 11.4 \n",
"8808 56.1 \n",
"8809 42.1 \n",
"8810 203 \n",
"8811 1332 \n",
"8812 15.3 \n",
"8813 3.5 \n",
"8814 8.5 \n",
"8815 47.1 \n",
"8816 8.2 \n",
"8817 5.1 \n",
"8818 77.1 \n",
"8819 6.4 \n",
"8820 10 \n",
"8821 12.2 \n",
"8822 55.8 \n",
"8823 81.3 \n",
"8824 259 \n",
"8825 286.5 \n",
"8826 370.1 \n",
"8827 1353.8 \n",
"8828 1351.9 \n",
"8829 4456.8 \n",
"8830 3634.6 \n",
"8831 15062.4 \n",
"8832 17679.5 \n",
"8833 NaN \n",
"\n",
" GSM25350 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06985 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1852.2 \n",
"8805 645.2 \n",
"8806 75.2 \n",
"8807 109.8 \n",
"8808 57.3 \n",
"8809 183.5 \n",
"8810 132.5 \n",
"8811 1404.2 \n",
"8812 2.4 \n",
"8813 7.1 \n",
"8814 3.3 \n",
"8815 55.3 \n",
"8816 13.3 \n",
"8817 39.4 \n",
"8818 61.4 \n",
"8819 6.7 \n",
"8820 5.8 \n",
"8821 9 \n",
"8822 49.3 \n",
"8823 15.3 \n",
"8824 266.7 \n",
"8825 185.5 \n",
"8826 250 \n",
"8827 1032.4 \n",
"8828 1015.2 \n",
"8829 3188.6 \n",
"8830 2813.5 \n",
"8831 10854.6 \n",
"8832 13325.2 \n",
"8833 NaN \n",
"\n",
" GSM25356 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06993 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 799.8 \n",
"8805 454.4 \n",
"8806 31 \n",
"8807 77.6 \n",
"8808 104.8 \n",
"8809 41.3 \n",
"8810 223.7 \n",
"8811 864.7 \n",
"8812 30.6 \n",
"8813 3.9 \n",
"8814 2.1 \n",
"8815 11.9 \n",
"8816 1.9 \n",
"8817 35.7 \n",
"8818 9.2 \n",
"8819 1.8 \n",
"8820 2.8 \n",
"8821 4 \n",
"8822 17.8 \n",
"8823 42.1 \n",
"8824 664.5 \n",
"8825 572.9 \n",
"8826 806.4 \n",
"8827 2539.7 \n",
"8828 2340.9 \n",
"8829 7993.1 \n",
"8830 6777.1 \n",
"8831 19995.1 \n",
"8832 20964.6 \n",
"8833 NaN \n",
"\n",
" GSM25357 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06993 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1011.7 \n",
"8805 411.2 \n",
"8806 353.5 \n",
"8807 99.2 \n",
"8808 201.9 \n",
"8809 51.9 \n",
"8810 214.5 \n",
"8811 459.7 \n",
"8812 5.9 \n",
"8813 3.9 \n",
"8814 53.3 \n",
"8815 49.1 \n",
"8816 26.6 \n",
"8817 43.3 \n",
"8818 79.6 \n",
"8819 1.3 \n",
"8820 10.2 \n",
"8821 11.3 \n",
"8822 38.6 \n",
"8823 48.2 \n",
"8824 148.4 \n",
"8825 123.2 \n",
"8826 136.9 \n",
"8827 646.1 \n",
"8828 439.1 \n",
"8829 1845.3 \n",
"8830 1340 \n",
"8831 6494 \n",
"8832 7346.5 \n",
"8833 NaN \n",
"\n",
" GSM25358 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06994 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 600.1 \n",
"8805 363.3 \n",
"8806 108.4 \n",
"8807 75.4 \n",
"8808 71.8 \n",
"8809 71.1 \n",
"8810 175.2 \n",
"8811 942.6 \n",
"8812 3.5 \n",
"8813 1.3 \n",
"8814 3.2 \n",
"8815 17.6 \n",
"8816 6.9 \n",
"8817 18 \n",
"8818 45.3 \n",
"8819 14.8 \n",
"8820 1.5 \n",
"8821 3.4 \n",
"8822 97.6 \n",
"8823 60.2 \n",
"8824 281.6 \n",
"8825 251.6 \n",
"8826 332.3 \n",
"8827 1303.8 \n",
"8828 1097.6 \n",
"8829 3985.8 \n",
"8830 3385.2 \n",
"8831 12609.5 \n",
"8832 15322.4 \n",
"8833 NaN \n",
"\n",
" GSM25359 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM06994 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 588.7 \n",
"8805 327.2 \n",
"8806 287.9 \n",
"8807 134.5 \n",
"8808 189 \n",
"8809 24.6 \n",
"8810 384.5 \n",
"8811 1549.3 \n",
"8812 7.4 \n",
"8813 4.5 \n",
"8814 17.2 \n",
"8815 9.8 \n",
"8816 2 \n",
"8817 31.7 \n",
"8818 27.3 \n",
"8819 4.5 \n",
"8820 40 \n",
"8821 3.6 \n",
"8822 38.2 \n",
"8823 8 \n",
"8824 349.9 \n",
"8825 360.4 \n",
"8826 452.4 \n",
"8827 1805.9 \n",
"8828 1527.3 \n",
"8829 4621.8 \n",
"8830 3853.5 \n",
"8831 15177.5 \n",
"8832 15541.8 \n",
"8833 NaN \n",
"\n",
" GSM25360 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07000 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 676.9 \n",
"8805 301.3 \n",
"8806 91.7 \n",
"8807 8.9 \n",
"8808 39.7 \n",
"8809 26.1 \n",
"8810 237.7 \n",
"8811 1923.3 \n",
"8812 9.7 \n",
"8813 27.3 \n",
"8814 25.6 \n",
"8815 5.9 \n",
"8816 16.4 \n",
"8817 17.9 \n",
"8818 16.6 \n",
"8819 16.5 \n",
"8820 39 \n",
"8821 3.5 \n",
"8822 43.2 \n",
"8823 41.8 \n",
"8824 469.3 \n",
"8825 432.7 \n",
"8826 543.7 \n",
"8827 2030.1 \n",
"8828 2097.1 \n",
"8829 6283.4 \n",
"8830 5323.2 \n",
"8831 17468.9 \n",
"8832 24135.4 \n",
"8833 NaN \n",
"\n",
" GSM25361 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07000 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1039.7 \n",
"8805 272.3 \n",
"8806 38.6 \n",
"8807 9.8 \n",
"8808 13 \n",
"8809 34.6 \n",
"8810 200.5 \n",
"8811 1180.4 \n",
"8812 3.3 \n",
"8813 8.1 \n",
"8814 3.2 \n",
"8815 40.3 \n",
"8816 2.7 \n",
"8817 19 \n",
"8818 27.3 \n",
"8819 3.3 \n",
"8820 57.5 \n",
"8821 6.3 \n",
"8822 56.8 \n",
"8823 13.1 \n",
"8824 152.9 \n",
"8825 183.5 \n",
"8826 168.4 \n",
"8827 777.4 \n",
"8828 696.4 \n",
"8829 2112.3 \n",
"8830 1690.8 \n",
"8831 6847.4 \n",
"8832 8037.3 \n",
"8833 NaN \n",
"\n",
" GSM25377 \\\n",
"0 Public on Aug 12 2004 \n",
"1 Jun 17 2004 \n",
"2 Nov 30 2005 \n",
"3 RNA \n",
"4 1 \n",
"5 Lymphoblastoid cell line \n",
"6 Homo sapiens \n",
"7 Coriell cell line repository identifier: GM07022 \n",
"8 http://locus.umdnj.edu/nigms/nigms_cgi/display... \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 Coriell Cell Repositories \n",
"14 NaN \n",
"15 Coriell \n",
"16 total RNA \n",
"17 NaN \n",
"18 NaN \n",
"19 9606 \n",
"20 NaN \n",
"21 NaN \n",
"22 Sample description = RNA was extracted from ly... \n",
"23 NaN \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1109.1 \n",
"8805 581.4 \n",
"8806 21.4 \n",
"8807 28.1 \n",
"8808 63 \n",
"8809 50.8 \n",
"8810 137.5 \n",
"8811 461.4 \n",
"8812 60.5 \n",
"8813 4.4 \n",
"8814 3.4 \n",
"8815 13.1 \n",
"8816 5.4 \n",
"8817 63.5 \n",
"8818 43.7 \n",
"8819 47.6 \n",
"8820 61.6 \n",
"8821 14 \n",
"8822 37.8 \n",
"8823 42 \n",
"8824 674.7 \n",
"8825 677.2 \n",
"8826 932.8 \n",
"8827 3466.8 \n",
"8828 3240.3 \n",
"8829 11969.8 \n",
"8830 8892.4 \n",
"8831 27817.6 \n",
"8832 32044.7 \n",
"8833 NaN \n",
"\n",
" ... \\\n",
"0 ... \n",
"1 ... \n",
"2 ... \n",
"3 ... \n",
"4 ... \n",
"5 ... \n",
"6 ... \n",
"7 ... \n",
"8 ... \n",
"9 ... \n",
"10 ... \n",
"11 ... \n",
"12 ... \n",
"13 ... \n",
"14 ... \n",
"15 ... \n",
"16 ... \n",
"17 ... \n",
"18 ... \n",
"19 ... \n",
"20 ... \n",
"21 ... \n",
"22 ... \n",
"23 ... \n",
"24 ... \n",
"25 ... \n",
"26 ... \n",
"27 ... \n",
"28 ... \n",
"29 ... \n",
"... ... \n",
"8804 ... \n",
"8805 ... \n",
"8806 ... \n",
"8807 ... \n",
"8808 ... \n",
"8809 ... \n",
"8810 ... \n",
"8811 ... \n",
"8812 ... \n",
"8813 ... \n",
"8814 ... \n",
"8815 ... \n",
"8816 ... \n",
"8817 ... \n",
"8818 ... \n",
"8819 ... \n",
"8820 ... \n",
"8821 ... \n",
"8822 ... \n",
"8823 ... \n",
"8824 ... \n",
"8825 ... \n",
"8826 ... \n",
"8827 ... \n",
"8828 ... \n",
"8829 ... \n",
"8830 ... \n",
"8831 ... \n",
"8832 ... \n",
"8833 ... \n",
"\n",
" GSM136719 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3289.38 \n",
"8805 1838.74 \n",
"8806 76.8999 \n",
"8807 28.5 \n",
"8808 30.4 \n",
"8809 52.9002 \n",
"8810 151.5 \n",
"8811 464.701 \n",
"8812 5.49999 \n",
"8813 3.2 \n",
"8814 10.4 \n",
"8815 20.9 \n",
"8816 0.6 \n",
"8817 4.30001 \n",
"8818 57.2999 \n",
"8819 10.1 \n",
"8820 1.1 \n",
"8821 7.30002 \n",
"8822 48.4999 \n",
"8823 75.3001 \n",
"8824 126.7 \n",
"8825 162.3 \n",
"8826 180.9 \n",
"8827 478.299 \n",
"8828 525.898 \n",
"8829 7876.29 \n",
"8830 7070.52 \n",
"8831 19.3999 \n",
"8832 6.60002 \n",
"8833 NaN \n",
"\n",
" GSM136720 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1830.6 \n",
"8805 698.4 \n",
"8806 85.9002 \n",
"8807 5.69999 \n",
"8808 51.5 \n",
"8809 50.2002 \n",
"8810 166.5 \n",
"8811 623.001 \n",
"8812 1.7 \n",
"8813 10.2 \n",
"8814 0.7 \n",
"8815 11.5 \n",
"8816 3.70001 \n",
"8817 31.8999 \n",
"8818 35.1 \n",
"8819 13.6 \n",
"8820 2.89999 \n",
"8821 2.99999 \n",
"8822 76.0001 \n",
"8823 15.1 \n",
"8824 99.4997 \n",
"8825 96.9998 \n",
"8826 130.9 \n",
"8827 549.7 \n",
"8828 548.501 \n",
"8829 8033.43 \n",
"8830 7290.49 \n",
"8831 9.69997 \n",
"8832 2 \n",
"8833 NaN \n",
"\n",
" GSM136721 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3108.71 \n",
"8805 1665.11 \n",
"8806 38.3999 \n",
"8807 11.1 \n",
"8808 32.9999 \n",
"8809 39.9001 \n",
"8810 171 \n",
"8811 402.7 \n",
"8812 1.5 \n",
"8813 4.39999 \n",
"8814 0.8 \n",
"8815 16.3 \n",
"8816 2.99999 \n",
"8817 1.1 \n",
"8818 44 \n",
"8819 5.49999 \n",
"8820 2.19999 \n",
"8821 4 \n",
"8822 52.6 \n",
"8823 12.2 \n",
"8824 76.7998 \n",
"8825 144.1 \n",
"8826 155.9 \n",
"8827 516.201 \n",
"8828 619.899 \n",
"8829 7867.01 \n",
"8830 7330.01 \n",
"8831 38.6 \n",
"8832 12.5 \n",
"8833 NaN \n",
"\n",
" GSM136722 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 3062.72 \n",
"8805 1481.87 \n",
"8806 113.3 \n",
"8807 23.4001 \n",
"8808 28.7 \n",
"8809 103.4 \n",
"8810 184 \n",
"8811 552.599 \n",
"8812 8 \n",
"8813 2.39999 \n",
"8814 1.1 \n",
"8815 15.1 \n",
"8816 23.8 \n",
"8817 4.79999 \n",
"8818 27.3 \n",
"8819 1.5 \n",
"8820 3.2 \n",
"8821 24.2999 \n",
"8822 72.8002 \n",
"8823 47.8 \n",
"8824 152.8 \n",
"8825 158.3 \n",
"8826 198 \n",
"8827 586.2 \n",
"8828 705.201 \n",
"8829 9144.57 \n",
"8830 7994.54 \n",
"8831 9.10002 \n",
"8832 4 \n",
"8833 NaN \n",
"\n",
" GSM136723 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2792.42 \n",
"8805 1465.12 \n",
"8806 57.4 \n",
"8807 4.79999 \n",
"8808 23.9 \n",
"8809 47.8 \n",
"8810 131.9 \n",
"8811 367.801 \n",
"8812 2.80001 \n",
"8813 1.7 \n",
"8814 2.19999 \n",
"8815 32 \n",
"8816 1.6 \n",
"8817 18.5 \n",
"8818 55.5002 \n",
"8819 13.6 \n",
"8820 9.50002 \n",
"8821 13.1 \n",
"8822 61.7998 \n",
"8823 51.6 \n",
"8824 160.8 \n",
"8825 126.5 \n",
"8826 140.3 \n",
"8827 528.2 \n",
"8828 642.601 \n",
"8829 7400.46 \n",
"8830 5365.14 \n",
"8831 22.9001 \n",
"8832 12.7 \n",
"8833 NaN \n",
"\n",
" GSM136724 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2550.21 \n",
"8805 1281.93 \n",
"8806 175.101 \n",
"8807 73.6999 \n",
"8808 122.5 \n",
"8809 120 \n",
"8810 267.201 \n",
"8811 731.701 \n",
"8812 10.2 \n",
"8813 5.10001 \n",
"8814 5.79999 \n",
"8815 20.0999 \n",
"8816 1.6 \n",
"8817 6.1 \n",
"8818 47.8999 \n",
"8819 9.10002 \n",
"8820 12.7 \n",
"8821 11.5 \n",
"8822 42.9999 \n",
"8823 62.6998 \n",
"8824 118.3 \n",
"8825 170.7 \n",
"8826 212.3 \n",
"8827 700.499 \n",
"8828 899.8 \n",
"8829 12090.6 \n",
"8830 10405.8 \n",
"8831 8.29999 \n",
"8832 7.89999 \n",
"8833 NaN \n",
"\n",
" GSM136725 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1969.34 \n",
"8805 1191.78 \n",
"8806 53.4001 \n",
"8807 5.10001 \n",
"8808 6.5 \n",
"8809 38.9999 \n",
"8810 41.7001 \n",
"8811 154.1 \n",
"8812 3.39999 \n",
"8813 3.70001 \n",
"8814 0.299999 \n",
"8815 9.10002 \n",
"8816 8.4 \n",
"8817 1.4 \n",
"8818 5.00001 \n",
"8819 24.4 \n",
"8820 5.29999 \n",
"8821 25.6 \n",
"8822 31.5999 \n",
"8823 24.7 \n",
"8824 105.6 \n",
"8825 100.9 \n",
"8826 121.6 \n",
"8827 379.201 \n",
"8828 420.4 \n",
"8829 6472.02 \n",
"8830 5860.87 \n",
"8831 21.7 \n",
"8832 6.39999 \n",
"8833 NaN \n",
"\n",
" GSM136726 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 2991.8 \n",
"8805 2031.46 \n",
"8806 13.4 \n",
"8807 3.2 \n",
"8808 34.8999 \n",
"8809 42.9001 \n",
"8810 57.8999 \n",
"8811 94.0998 \n",
"8812 1.5 \n",
"8813 2.89999 \n",
"8814 1.3 \n",
"8815 27.6001 \n",
"8816 1.4 \n",
"8817 25.0001 \n",
"8818 14.5 \n",
"8819 15.5 \n",
"8820 21.4 \n",
"8821 8.19998 \n",
"8822 36.1001 \n",
"8823 45.1001 \n",
"8824 75.6999 \n",
"8825 98.9001 \n",
"8826 76.7998 \n",
"8827 262.499 \n",
"8828 225.7 \n",
"8829 4458.06 \n",
"8830 3727.52 \n",
"8831 10.2 \n",
"8832 4.59999 \n",
"8833 NaN \n",
"\n",
" GSM136727 \\\n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1639.34 \n",
"8805 734.099 \n",
"8806 16 \n",
"8807 25.5001 \n",
"8808 5.60001 \n",
"8809 31.0001 \n",
"8810 179.7 \n",
"8811 414.699 \n",
"8812 1.1 \n",
"8813 13.7 \n",
"8814 3.1 \n",
"8815 10.1 \n",
"8816 1.9 \n",
"8817 6.60002 \n",
"8818 7.89999 \n",
"8819 3.70001 \n",
"8820 3.39999 \n",
"8821 19.9 \n",
"8822 60.4999 \n",
"8823 42.0001 \n",
"8824 120.3 \n",
"8825 105.7 \n",
"8826 103.7 \n",
"8827 460.399 \n",
"8828 478.2 \n",
"8829 8437.5 \n",
"8830 7137.98 \n",
"8831 33.4001 \n",
"8832 4.39999 \n",
"8833 NaN \n",
"\n",
" GSM136729 \n",
"0 Public on Jan 07 2007 \n",
"1 Sep 18 2006 \n",
"2 Jan 04 2007 \n",
"3 RNA \n",
"4 1 \n",
"5 lymphoblastoid cell lines from the CEU, CHB an... \n",
"6 Homo sapiens \n",
"7 lymphoblastoid cell line \n",
"8 NaN \n",
"9 NaN \n",
"10 NaN \n",
"11 NaN \n",
"12 NaN \n",
"13 NaN \n",
"14 NaN \n",
"15 NaN \n",
"16 total RNA \n",
"17 biotin \n",
"18 standard Affymetrix procedures \n",
"19 9606 \n",
"20 standard Affymetrix procedures \n",
"21 standard Affymetrix procedures \n",
"22 The cells were grown at a density of 5 x 105 c... \n",
"23 Affymetrix Microarray Suite version 5.0 \n",
"24 GPL201 \n",
"25 Michael,Patrick,Morley \n",
"26 mmorley@mail.med.upenn.edu \n",
"27 215-898-2026 \n",
"28 Penn Cardiovascular Institute \n",
"29 Perelman School of Medicine at the University ... \n",
"... ... \n",
"8804 1781.9 \n",
"8805 1099.17 \n",
"8806 77.9999 \n",
"8807 4.39999 \n",
"8808 7.79998 \n",
"8809 43.6001 \n",
"8810 236.201 \n",
"8811 577.001 \n",
"8812 1.6 \n",
"8813 2.5 \n",
"8814 1.2 \n",
"8815 15.8999 \n",
"8816 1.1 \n",
"8817 32.6 \n",
"8818 49.4 \n",
"8819 1.3 \n",
"8820 24.6001 \n",
"8821 5.19999 \n",
"8822 84.0002 \n",
"8823 49.6001 \n",
"8824 203.401 \n",
"8825 160.6 \n",
"8826 191.3 \n",
"8827 637.902 \n",
"8828 540.099 \n",
"8829 7842.51 \n",
"8830 7780.25 \n",
"8831 11.7 \n",
"8832 0.8 \n",
"8833 NaN \n",
"\n",
"[8834 rows x 209 columns]"
]
},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"df = pd.read_table('GSE5859_series_matrix.txt', skiprows=34, low_memory=False)\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"matrix = df.iloc[40:]\n",
"new_columns = [a for a in matrix.columns]"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"new_columns[0] = 'Probe'"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"matrix.columns = new_columns"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Probe</th>\n",
" <th>GSM25349</th>\n",
" <th>GSM25350</th>\n",
" <th>GSM25356</th>\n",
" <th>GSM25357</th>\n",
" <th>GSM25358</th>\n",
" <th>GSM25359</th>\n",
" <th>GSM25360</th>\n",
" <th>GSM25361</th>\n",
" <th>GSM25377</th>\n",
" <th>...</th>\n",
" <th>GSM136719</th>\n",
" <th>GSM136720</th>\n",
" <th>GSM136721</th>\n",
" <th>GSM136722</th>\n",
" <th>GSM136723</th>\n",
" <th>GSM136724</th>\n",
" <th>GSM136725</th>\n",
" <th>GSM136726</th>\n",
" <th>GSM136727</th>\n",
" <th>GSM136729</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>40</th>\n",
" <td>1007_s_at</td>\n",
" <td>329.9</td>\n",
" <td>408.1</td>\n",
" <td>258.2</td>\n",
" <td>262</td>\n",
" <td>299.2</td>\n",
" <td>318.1</td>\n",
" <td>338.7</td>\n",
" <td>333.2</td>\n",
" <td>419.5</td>\n",
" <td>...</td>\n",
" <td>325.301</td>\n",
" <td>342.899</td>\n",
" <td>533.498</td>\n",
" <td>384.7</td>\n",
" <td>394.899</td>\n",
" <td>417.699</td>\n",
" <td>380.6</td>\n",
" <td>422.8</td>\n",
" <td>232.401</td>\n",
" <td>248.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>41</th>\n",
" <td>1053_at</td>\n",
" <td>419.1</td>\n",
" <td>378.6</td>\n",
" <td>359.9</td>\n",
" <td>612.1</td>\n",
" <td>297.4</td>\n",
" <td>305.7</td>\n",
" <td>315</td>\n",
" <td>363.8</td>\n",
" <td>424.8</td>\n",
" <td>...</td>\n",
" <td>345.301</td>\n",
" <td>537.001</td>\n",
" <td>376.201</td>\n",
" <td>406.9</td>\n",
" <td>347.799</td>\n",
" <td>426.201</td>\n",
" <td>438.201</td>\n",
" <td>431.1</td>\n",
" <td>296.1</td>\n",
" <td>235.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>42</th>\n",
" <td>117_at</td>\n",
" <td>70.8</td>\n",
" <td>47.9</td>\n",
" <td>107.9</td>\n",
" <td>114.3</td>\n",
" <td>111.2</td>\n",
" <td>74.3</td>\n",
" <td>107.2</td>\n",
" <td>95.6</td>\n",
" <td>297.8</td>\n",
" <td>...</td>\n",
" <td>172.6</td>\n",
" <td>23.5</td>\n",
" <td>63.2998</td>\n",
" <td>115.4</td>\n",
" <td>182.4</td>\n",
" <td>87.6001</td>\n",
" <td>80.5002</td>\n",
" <td>58</td>\n",
" <td>152.1</td>\n",
" <td>124.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>43</th>\n",
" <td>121_at</td>\n",
" <td>908.2</td>\n",
" <td>798.4</td>\n",
" <td>720.5</td>\n",
" <td>798</td>\n",
" <td>614.6</td>\n",
" <td>503.3</td>\n",
" <td>467.5</td>\n",
" <td>405.8</td>\n",
" <td>894.9</td>\n",
" <td>...</td>\n",
" <td>930.602</td>\n",
" <td>917.3</td>\n",
" <td>794.801</td>\n",
" <td>967.099</td>\n",
" <td>924.898</td>\n",
" <td>950.9</td>\n",
" <td>666.601</td>\n",
" <td>797.699</td>\n",
" <td>787.202</td>\n",
" <td>631.299</td>\n",
" </tr>\n",
" <tr>\n",
" <th>44</th>\n",
" <td>1255_g_at</td>\n",
" <td>50.9</td>\n",
" <td>8</td>\n",
" <td>12.9</td>\n",
" <td>55.4</td>\n",
" <td>27.3</td>\n",
" <td>28.9</td>\n",
" <td>13.5</td>\n",
" <td>13.1</td>\n",
" <td>93</td>\n",
" <td>...</td>\n",
" <td>7.6</td>\n",
" <td>28.5</td>\n",
" <td>22.7</td>\n",
" <td>8.19998</td>\n",
" <td>33.2</td>\n",
" <td>23.5</td>\n",
" <td>40.7001</td>\n",
" <td>19.3</td>\n",
" <td>50.6999</td>\n",
" <td>5.69999</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>5 rows × 209 columns</p>\n",
"</div>"
],
"text/plain": [
" Probe GSM25349 GSM25350 GSM25356 GSM25357 GSM25358 GSM25359 GSM25360 \\\n",
"40 1007_s_at 329.9 408.1 258.2 262 299.2 318.1 338.7 \n",
"41 1053_at 419.1 378.6 359.9 612.1 297.4 305.7 315 \n",
"42 117_at 70.8 47.9 107.9 114.3 111.2 74.3 107.2 \n",
"43 121_at 908.2 798.4 720.5 798 614.6 503.3 467.5 \n",
"44 1255_g_at 50.9 8 12.9 55.4 27.3 28.9 13.5 \n",
"\n",
" GSM25361 GSM25377 ... GSM136719 GSM136720 GSM136721 GSM136722 \\\n",
"40 333.2 419.5 ... 325.301 342.899 533.498 384.7 \n",
"41 363.8 424.8 ... 345.301 537.001 376.201 406.9 \n",
"42 95.6 297.8 ... 172.6 23.5 63.2998 115.4 \n",
"43 405.8 894.9 ... 930.602 917.3 794.801 967.099 \n",
"44 13.1 93 ... 7.6 28.5 22.7 8.19998 \n",
"\n",
" GSM136723 GSM136724 GSM136725 GSM136726 GSM136727 GSM136729 \n",
"40 394.899 417.699 380.6 422.8 232.401 248.3 \n",
"41 347.799 426.201 438.201 431.1 296.1 235.1 \n",
"42 182.4 87.6001 80.5002 58 152.1 124.6 \n",
"43 924.898 950.9 666.601 797.699 787.202 631.299 \n",
"44 33.2 23.5 40.7001 19.3 50.6999 5.69999 \n",
"\n",
"[5 rows x 209 columns]"
]
},
"execution_count": 8,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"matrix.head()"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {
"collapsed": false,
"scrolled": true
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Probe</th>\n",
" <th>GSM25349</th>\n",
" <th>GSM25350</th>\n",
" <th>GSM25356</th>\n",
" <th>GSM25357</th>\n",
" <th>GSM25358</th>\n",
" <th>GSM25359</th>\n",
" <th>GSM25360</th>\n",
" <th>GSM25361</th>\n",
" <th>GSM25377</th>\n",
" <th>...</th>\n",
" <th>GSM136719</th>\n",
" <th>GSM136720</th>\n",
" <th>GSM136721</th>\n",
" <th>GSM136722</th>\n",
" <th>GSM136723</th>\n",
" <th>GSM136724</th>\n",
" <th>GSM136725</th>\n",
" <th>GSM136726</th>\n",
" <th>GSM136727</th>\n",
" <th>GSM136729</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>1007_s_at</td>\n",
" <td>329.9</td>\n",
" <td>408.1</td>\n",
" <td>258.2</td>\n",
" <td>262</td>\n",
" <td>299.2</td>\n",
" <td>318.1</td>\n",
" <td>338.7</td>\n",
" <td>333.2</td>\n",
" <td>419.5</td>\n",
" <td>...</td>\n",
" <td>325.301</td>\n",
" <td>342.899</td>\n",
" <td>533.498</td>\n",
" <td>384.7</td>\n",
" <td>394.899</td>\n",
" <td>417.699</td>\n",
" <td>380.6</td>\n",
" <td>422.8</td>\n",
" <td>232.401</td>\n",
" <td>248.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>1053_at</td>\n",
" <td>419.1</td>\n",
" <td>378.6</td>\n",
" <td>359.9</td>\n",
" <td>612.1</td>\n",
" <td>297.4</td>\n",
" <td>305.7</td>\n",
" <td>315</td>\n",
" <td>363.8</td>\n",
" <td>424.8</td>\n",
" <td>...</td>\n",
" <td>345.301</td>\n",
" <td>537.001</td>\n",
" <td>376.201</td>\n",
" <td>406.9</td>\n",
" <td>347.799</td>\n",
" <td>426.201</td>\n",
" <td>438.201</td>\n",
" <td>431.1</td>\n",
" <td>296.1</td>\n",
" <td>235.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>117_at</td>\n",
" <td>70.8</td>\n",
" <td>47.9</td>\n",
" <td>107.9</td>\n",
" <td>114.3</td>\n",
" <td>111.2</td>\n",
" <td>74.3</td>\n",
" <td>107.2</td>\n",
" <td>95.6</td>\n",
" <td>297.8</td>\n",
" <td>...</td>\n",
" <td>172.6</td>\n",
" <td>23.5</td>\n",
" <td>63.2998</td>\n",
" <td>115.4</td>\n",
" <td>182.4</td>\n",
" <td>87.6001</td>\n",
" <td>80.5002</td>\n",
" <td>58</td>\n",
" <td>152.1</td>\n",
" <td>124.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>121_at</td>\n",
" <td>908.2</td>\n",
" <td>798.4</td>\n",
" <td>720.5</td>\n",
" <td>798</td>\n",
" <td>614.6</td>\n",
" <td>503.3</td>\n",
" <td>467.5</td>\n",
" <td>405.8</td>\n",
" <td>894.9</td>\n",
" <td>...</td>\n",
" <td>930.602</td>\n",
" <td>917.3</td>\n",
" <td>794.801</td>\n",
" <td>967.099</td>\n",
" <td>924.898</td>\n",
" <td>950.9</td>\n",
" <td>666.601</td>\n",
" <td>797.699</td>\n",
" <td>787.202</td>\n",
" <td>631.299</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>1255_g_at</td>\n",
" <td>50.9</td>\n",
" <td>8</td>\n",
" <td>12.9</td>\n",
" <td>55.4</td>\n",
" <td>27.3</td>\n",
" <td>28.9</td>\n",
" <td>13.5</td>\n",
" <td>13.1</td>\n",
" <td>93</td>\n",
" <td>...</td>\n",
" <td>7.6</td>\n",
" <td>28.5</td>\n",
" <td>22.7</td>\n",
" <td>8.19998</td>\n",
" <td>33.2</td>\n",
" <td>23.5</td>\n",
" <td>40.7001</td>\n",
" <td>19.3</td>\n",
" <td>50.6999</td>\n",
" <td>5.69999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>1294_at</td>\n",
" <td>510.5</td>\n",
" <td>575.6</td>\n",
" <td>485.7</td>\n",
" <td>345.3</td>\n",
" <td>668.4</td>\n",
" <td>585.5</td>\n",
" <td>989.8</td>\n",
" <td>1219.4</td>\n",
" <td>648.2</td>\n",
" <td>...</td>\n",
" <td>453.601</td>\n",
" <td>491</td>\n",
" <td>540.2</td>\n",
" <td>493.799</td>\n",
" <td>401.101</td>\n",
" <td>637.601</td>\n",
" <td>505.799</td>\n",
" <td>350.799</td>\n",
" <td>362.3</td>\n",
" <td>528.999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>1316_at</td>\n",
" <td>102.6</td>\n",
" <td>107.9</td>\n",
" <td>55</td>\n",
" <td>117.2</td>\n",
" <td>54.1</td>\n",
" <td>75.8</td>\n",
" <td>114</td>\n",
" <td>78.8</td>\n",
" <td>133.3</td>\n",
" <td>...</td>\n",
" <td>73.8999</td>\n",
" <td>86.6003</td>\n",
" <td>66.3001</td>\n",
" <td>86.2002</td>\n",
" <td>58.1002</td>\n",
" <td>87.2002</td>\n",
" <td>87.9999</td>\n",
" <td>71.6001</td>\n",
" <td>27.8999</td>\n",
" <td>41.5</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>1320_at</td>\n",
" <td>9.3</td>\n",
" <td>70.7</td>\n",
" <td>10.1</td>\n",
" <td>27</td>\n",
" <td>5.1</td>\n",
" <td>48.2</td>\n",
" <td>10.3</td>\n",
" <td>43.9</td>\n",
" <td>63.5</td>\n",
" <td>...</td>\n",
" <td>9.79999</td>\n",
" <td>12.7</td>\n",
" <td>14.3</td>\n",
" <td>66.4999</td>\n",
" <td>20.2</td>\n",
" <td>10.4</td>\n",
" <td>48.8</td>\n",
" <td>31.0001</td>\n",
" <td>14.7</td>\n",
" <td>37.9001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>1431_at</td>\n",
" <td>43.6</td>\n",
" <td>37</td>\n",
" <td>23</td>\n",
" <td>58</td>\n",
" <td>36.3</td>\n",
" <td>21.4</td>\n",
" <td>61</td>\n",
" <td>18.7</td>\n",
" <td>61.5</td>\n",
" <td>...</td>\n",
" <td>35.9</td>\n",
" <td>34.9999</td>\n",
" <td>39.8001</td>\n",
" <td>38.1</td>\n",
" <td>40.9</td>\n",
" <td>45.8999</td>\n",
" <td>21</td>\n",
" <td>31.0001</td>\n",
" <td>26.1999</td>\n",
" <td>22.7</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>1438_at</td>\n",
" <td>48.5</td>\n",
" <td>27.8</td>\n",
" <td>58.2</td>\n",
" <td>48.7</td>\n",
" <td>10.9</td>\n",
" <td>15.1</td>\n",
" <td>51.6</td>\n",
" <td>29</td>\n",
" <td>81.6</td>\n",
" <td>...</td>\n",
" <td>64.6998</td>\n",
" <td>58.7998</td>\n",
" <td>10.5</td>\n",
" <td>29.8</td>\n",
" <td>17.2</td>\n",
" <td>53</td>\n",
" <td>13</td>\n",
" <td>13.9</td>\n",
" <td>15.8</td>\n",
" <td>12.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>1487_at</td>\n",
" <td>350.7</td>\n",
" <td>294.4</td>\n",
" <td>366.6</td>\n",
" <td>365.3</td>\n",
" <td>338.4</td>\n",
" <td>272.3</td>\n",
" <td>375.8</td>\n",
" <td>339.8</td>\n",
" <td>552.9</td>\n",
" <td>...</td>\n",
" <td>331.001</td>\n",
" <td>247.199</td>\n",
" <td>296.4</td>\n",
" <td>255.1</td>\n",
" <td>260.899</td>\n",
" <td>294.199</td>\n",
" <td>308.099</td>\n",
" <td>371.601</td>\n",
" <td>511.199</td>\n",
" <td>567.002</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>1494_f_at</td>\n",
" <td>99</td>\n",
" <td>144.8</td>\n",
" <td>182.1</td>\n",
" <td>224.2</td>\n",
" <td>148.6</td>\n",
" <td>125.6</td>\n",
" <td>112.4</td>\n",
" <td>162.9</td>\n",
" <td>64.2</td>\n",
" <td>...</td>\n",
" <td>188.799</td>\n",
" <td>158.2</td>\n",
" <td>117.2</td>\n",
" <td>197.099</td>\n",
" <td>160.4</td>\n",
" <td>185.501</td>\n",
" <td>207.4</td>\n",
" <td>180.401</td>\n",
" <td>113.3</td>\n",
" <td>152.8</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>1598_g_at</td>\n",
" <td>260.9</td>\n",
" <td>353.4</td>\n",
" <td>238.2</td>\n",
" <td>224.9</td>\n",
" <td>111.5</td>\n",
" <td>182.9</td>\n",
" <td>184.2</td>\n",
" <td>180.9</td>\n",
" <td>309.7</td>\n",
" <td>...</td>\n",
" <td>397.2</td>\n",
" <td>312.201</td>\n",
" <td>244.8</td>\n",
" <td>391.3</td>\n",
" <td>333.4</td>\n",
" <td>293.399</td>\n",
" <td>259</td>\n",
" <td>188</td>\n",
" <td>270.199</td>\n",
" <td>200.899</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>160020_at</td>\n",
" <td>237.4</td>\n",
" <td>263.5</td>\n",
" <td>152.4</td>\n",
" <td>234.4</td>\n",
" <td>132.9</td>\n",
" <td>127</td>\n",
" <td>134.2</td>\n",
" <td>150.4</td>\n",
" <td>324.9</td>\n",
" <td>...</td>\n",
" <td>240.9</td>\n",
" <td>224.301</td>\n",
" <td>200.1</td>\n",
" <td>152.9</td>\n",
" <td>169.9</td>\n",
" <td>276.8</td>\n",
" <td>224.2</td>\n",
" <td>185.6</td>\n",
" <td>263.4</td>\n",
" <td>182.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>1729_at</td>\n",
" <td>816.9</td>\n",
" <td>665.3</td>\n",
" <td>459.6</td>\n",
" <td>414.4</td>\n",
" <td>452.9</td>\n",
" <td>427.1</td>\n",
" <td>598</td>\n",
" <td>735.4</td>\n",
" <td>393.4</td>\n",
" <td>...</td>\n",
" <td>630.901</td>\n",
" <td>853.602</td>\n",
" <td>471.6</td>\n",
" <td>340</td>\n",
" <td>496.6</td>\n",
" <td>411.401</td>\n",
" <td>528.5</td>\n",
" <td>541.201</td>\n",
" <td>528.5</td>\n",
" <td>348.301</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>1773_at</td>\n",
" <td>202.9</td>\n",
" <td>174</td>\n",
" <td>70.6</td>\n",
" <td>155.7</td>\n",
" <td>11.6</td>\n",
" <td>79.8</td>\n",
" <td>26.3</td>\n",
" <td>92.2</td>\n",
" <td>70.3</td>\n",
" <td>...</td>\n",
" <td>180.7</td>\n",
" <td>172.4</td>\n",
" <td>114.5</td>\n",
" <td>136.3</td>\n",
" <td>181.001</td>\n",
" <td>165</td>\n",
" <td>97.5</td>\n",
" <td>120.2</td>\n",
" <td>168.501</td>\n",
" <td>136.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>177_at</td>\n",
" <td>153.5</td>\n",
" <td>144.5</td>\n",
" <td>30.1</td>\n",
" <td>92.8</td>\n",
" <td>52.5</td>\n",
" <td>46.6</td>\n",
" <td>213</td>\n",
" <td>166</td>\n",
" <td>71.6</td>\n",
" <td>...</td>\n",
" <td>52.2001</td>\n",
" <td>196.3</td>\n",
" <td>163.8</td>\n",
" <td>123.8</td>\n",
" <td>210.001</td>\n",
" <td>131</td>\n",
" <td>261.999</td>\n",
" <td>362.099</td>\n",
" <td>56.5</td>\n",
" <td>130.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>1861_at</td>\n",
" <td>188.2</td>\n",
" <td>204.6</td>\n",
" <td>103.7</td>\n",
" <td>180.8</td>\n",
" <td>104.6</td>\n",
" <td>140.5</td>\n",
" <td>118.1</td>\n",
" <td>111.9</td>\n",
" <td>122.4</td>\n",
" <td>...</td>\n",
" <td>138.7</td>\n",
" <td>144.9</td>\n",
" <td>176.4</td>\n",
" <td>159.5</td>\n",
" <td>161.2</td>\n",
" <td>154.3</td>\n",
" <td>123.6</td>\n",
" <td>145.3</td>\n",
" <td>171</td>\n",
" <td>163.4</td>\n",
" </tr>\n",
" <tr>\n",
" <th>18</th>\n",
" <td>200000_s_at</td>\n",
" <td>2768.4</td>\n",
" <td>2605.6</td>\n",
" <td>2058.8</td>\n",
" <td>1920.5</td>\n",
" <td>2008.9</td>\n",
" <td>2357.6</td>\n",
" <td>2047.1</td>\n",
" <td>2100.4</td>\n",
" <td>2312.2</td>\n",
" <td>...</td>\n",
" <td>2069.83</td>\n",
" <td>1912.44</td>\n",
" <td>2248.11</td>\n",
" <td>2151.76</td>\n",
" <td>2356.61</td>\n",
" <td>2005.44</td>\n",
" <td>3063.57</td>\n",
" <td>2094.22</td>\n",
" <td>2377.45</td>\n",
" <td>2558.71</td>\n",
" </tr>\n",
" <tr>\n",
" <th>19</th>\n",
" <td>200001_at</td>\n",
" <td>2503.7</td>\n",
" <td>2881.4</td>\n",
" <td>2201.8</td>\n",
" <td>2580.7</td>\n",
" <td>2401.8</td>\n",
" <td>2063.1</td>\n",
" <td>2041.9</td>\n",
" <td>2682.6</td>\n",
" <td>2887.1</td>\n",
" <td>...</td>\n",
" <td>2450.4</td>\n",
" <td>2804.64</td>\n",
" <td>2373.5</td>\n",
" <td>2690.39</td>\n",
" <td>2848.53</td>\n",
" <td>1494.97</td>\n",
" <td>3290.98</td>\n",
" <td>3073.78</td>\n",
" <td>4708.66</td>\n",
" <td>2606.68</td>\n",
" </tr>\n",
" <tr>\n",
" <th>20</th>\n",
" <td>200002_at</td>\n",
" <td>23153.8</td>\n",
" <td>24351.2</td>\n",
" <td>17455.6</td>\n",
" <td>12257.8</td>\n",
" <td>13091.4</td>\n",
" <td>16095.4</td>\n",
" <td>15706.6</td>\n",
" <td>16687.8</td>\n",
" <td>17705.1</td>\n",
" <td>...</td>\n",
" <td>14858.5</td>\n",
" <td>17264.2</td>\n",
" <td>17396.4</td>\n",
" <td>15608</td>\n",
" <td>15528.2</td>\n",
" <td>22217.4</td>\n",
" <td>18027.4</td>\n",
" <td>8777.53</td>\n",
" <td>15172.8</td>\n",
" <td>15202.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>21</th>\n",
" <td>200003_s_at</td>\n",
" <td>23458.2</td>\n",
" <td>24298.2</td>\n",
" <td>19064.6</td>\n",
" <td>15105.3</td>\n",
" <td>14796.8</td>\n",
" <td>19148.1</td>\n",
" <td>19736.3</td>\n",
" <td>19082.2</td>\n",
" <td>14373.1</td>\n",
" <td>...</td>\n",
" <td>17049</td>\n",
" <td>17845.8</td>\n",
" <td>16900.8</td>\n",
" <td>18612.7</td>\n",
" <td>16814.3</td>\n",
" <td>22028.7</td>\n",
" <td>15497</td>\n",
" <td>8648.29</td>\n",
" <td>13095.6</td>\n",
" <td>16126</td>\n",
" </tr>\n",
" <tr>\n",
" <th>22</th>\n",
" <td>200004_at</td>\n",
" <td>4972.2</td>\n",
" <td>4920.7</td>\n",
" <td>6542.7</td>\n",
" <td>6028.4</td>\n",
" <td>6322.2</td>\n",
" <td>6092.4</td>\n",
" <td>4675.1</td>\n",
" <td>3975.2</td>\n",
" <td>6239.3</td>\n",
" <td>...</td>\n",
" <td>6386.9</td>\n",
" <td>4874.37</td>\n",
" <td>6469.78</td>\n",
" <td>6144.16</td>\n",
" <td>5810.72</td>\n",
" <td>5000.65</td>\n",
" <td>4649.95</td>\n",
" <td>5662.02</td>\n",
" <td>6929.81</td>\n",
" <td>7499.09</td>\n",
" </tr>\n",
" <tr>\n",
" <th>23</th>\n",
" <td>200005_at</td>\n",
" <td>6600.9</td>\n",
" <td>7526.9</td>\n",
" <td>4004.2</td>\n",
" <td>4411.3</td>\n",
" <td>3659.7</td>\n",
" <td>3415.9</td>\n",
" <td>3555.5</td>\n",
" <td>4098.4</td>\n",
" <td>4211</td>\n",
" <td>...</td>\n",
" <td>4296.66</td>\n",
" <td>4468.27</td>\n",
" <td>4277.94</td>\n",
" <td>3944.43</td>\n",
" <td>3787.68</td>\n",
" <td>5230.02</td>\n",
" <td>4507.46</td>\n",
" <td>4657.69</td>\n",
" <td>4719.11</td>\n",
" <td>4481.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>24</th>\n",
" <td>200006_at</td>\n",
" <td>9246.7</td>\n",
" <td>9750.1</td>\n",
" <td>8519.6</td>\n",
" <td>8718.4</td>\n",
" <td>8974.7</td>\n",
" <td>9062.8</td>\n",
" <td>9375.2</td>\n",
" <td>7783.4</td>\n",
" <td>8460.5</td>\n",
" <td>...</td>\n",
" <td>7211.58</td>\n",
" <td>7143.92</td>\n",
" <td>7567.49</td>\n",
" <td>7316.81</td>\n",
" <td>7878.47</td>\n",
" <td>6987.69</td>\n",
" <td>8897.6</td>\n",
" <td>7650.83</td>\n",
" <td>7316.81</td>\n",
" <td>7349.85</td>\n",
" </tr>\n",
" <tr>\n",
" <th>25</th>\n",
" <td>200007_at</td>\n",
" <td>4917.4</td>\n",
" <td>4763.4</td>\n",
" <td>5024.4</td>\n",
" <td>5265.1</td>\n",
" <td>5759.1</td>\n",
" <td>5963.1</td>\n",
" <td>7255.8</td>\n",
" <td>5863</td>\n",
" <td>4530.8</td>\n",
" <td>...</td>\n",
" <td>5305.23</td>\n",
" <td>5259.83</td>\n",
" <td>4899.1</td>\n",
" <td>5232.92</td>\n",
" <td>5756.2</td>\n",
" <td>4769.1</td>\n",
" <td>4969.9</td>\n",
" <td>3872.1</td>\n",
" <td>4407.67</td>\n",
" <td>4308.59</td>\n",
" </tr>\n",
" <tr>\n",
" <th>26</th>\n",
" <td>200008_s_at</td>\n",
" <td>4002.4</td>\n",
" <td>4280.6</td>\n",
" <td>1811.7</td>\n",
" <td>1516.4</td>\n",
" <td>1397.5</td>\n",
" <td>1027.1</td>\n",
" <td>845.6</td>\n",
" <td>1404.9</td>\n",
" <td>2183</td>\n",
" <td>...</td>\n",
" <td>3744.09</td>\n",
" <td>3615.8</td>\n",
" <td>3451.48</td>\n",
" <td>3299.66</td>\n",
" <td>2911</td>\n",
" <td>2722.85</td>\n",
" <td>2065.11</td>\n",
" <td>2083.37</td>\n",
" <td>2721.34</td>\n",
" <td>2745.78</td>\n",
" </tr>\n",
" <tr>\n",
" <th>27</th>\n",
" <td>200009_at</td>\n",
" <td>6565.1</td>\n",
" <td>6577.5</td>\n",
" <td>4809.4</td>\n",
" <td>5354.1</td>\n",
" <td>5849.7</td>\n",
" <td>6040.3</td>\n",
" <td>4885</td>\n",
" <td>5074.3</td>\n",
" <td>5612.3</td>\n",
" <td>...</td>\n",
" <td>5574.78</td>\n",
" <td>6901.53</td>\n",
" <td>6481.9</td>\n",
" <td>5895.1</td>\n",
" <td>5822</td>\n",
" <td>7148.38</td>\n",
" <td>5256.91</td>\n",
" <td>4724.35</td>\n",
" <td>6202.78</td>\n",
" <td>5387.87</td>\n",
" </tr>\n",
" <tr>\n",
" <th>28</th>\n",
" <td>200010_at</td>\n",
" <td>16488.9</td>\n",
" <td>15388.9</td>\n",
" <td>13689.6</td>\n",
" <td>10883.2</td>\n",
" <td>12046.5</td>\n",
" <td>13666.3</td>\n",
" <td>12881.1</td>\n",
" <td>10966.5</td>\n",
" <td>15697.7</td>\n",
" <td>...</td>\n",
" <td>14788.6</td>\n",
" <td>14455.2</td>\n",
" <td>14359.3</td>\n",
" <td>14784.5</td>\n",
" <td>14610.3</td>\n",
" <td>19753.2</td>\n",
" <td>13155.7</td>\n",
" <td>8780.58</td>\n",
" <td>13566.9</td>\n",
" <td>12124.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>29</th>\n",
" <td>200011_s_at</td>\n",
" <td>1532</td>\n",
" <td>1347.8</td>\n",
" <td>1136.8</td>\n",
" <td>1260.5</td>\n",
" <td>1792.5</td>\n",
" <td>1704.5</td>\n",
" <td>1786.7</td>\n",
" <td>1894</td>\n",
" <td>1778.3</td>\n",
" <td>...</td>\n",
" <td>2032.16</td>\n",
" <td>1947.76</td>\n",
" <td>1681.34</td>\n",
" <td>1953.17</td>\n",
" <td>2920.5</td>\n",
" <td>1604.6</td>\n",
" <td>2473.61</td>\n",
" <td>2934.3</td>\n",
" <td>2557.82</td>\n",
" <td>1795.16</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8764</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MA_at</td>\n",
" <td>2119.2</td>\n",
" <td>1852.2</td>\n",
" <td>799.8</td>\n",
" <td>1011.7</td>\n",
" <td>600.1</td>\n",
" <td>588.7</td>\n",
" <td>676.9</td>\n",
" <td>1039.7</td>\n",
" <td>1109.1</td>\n",
" <td>...</td>\n",
" <td>3289.38</td>\n",
" <td>1830.6</td>\n",
" <td>3108.71</td>\n",
" <td>3062.72</td>\n",
" <td>2792.42</td>\n",
" <td>2550.21</td>\n",
" <td>1969.34</td>\n",
" <td>2991.8</td>\n",
" <td>1639.34</td>\n",
" <td>1781.9</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8765</th>\n",
" <td>AFFX-HUMISGF3A/M97935_MB_at</td>\n",
" <td>998.9</td>\n",
" <td>645.2</td>\n",
" <td>454.4</td>\n",
" <td>411.2</td>\n",
" <td>363.3</td>\n",
" <td>327.2</td>\n",
" <td>301.3</td>\n",
" <td>272.3</td>\n",
" <td>581.4</td>\n",
" <td>...</td>\n",
" <td>1838.74</td>\n",
" <td>698.4</td>\n",
" <td>1665.11</td>\n",
" <td>1481.87</td>\n",
" <td>1465.12</td>\n",
" <td>1281.93</td>\n",
" <td>1191.78</td>\n",
" <td>2031.46</td>\n",
" <td>734.099</td>\n",
" <td>1099.17</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8766</th>\n",
" <td>AFFX-HUMRGE/M10098_3_at</td>\n",
" <td>45.7</td>\n",
" <td>75.2</td>\n",
" <td>31</td>\n",
" <td>353.5</td>\n",
" <td>108.4</td>\n",
" <td>287.9</td>\n",
" <td>91.7</td>\n",
" <td>38.6</td>\n",
" <td>21.4</td>\n",
" <td>...</td>\n",
" <td>76.8999</td>\n",
" <td>85.9002</td>\n",
" <td>38.3999</td>\n",
" <td>113.3</td>\n",
" <td>57.4</td>\n",
" <td>175.101</td>\n",
" <td>53.4001</td>\n",
" <td>13.4</td>\n",
" <td>16</td>\n",
" <td>77.9999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8767</th>\n",
" <td>AFFX-HUMRGE/M10098_5_at</td>\n",
" <td>11.4</td>\n",
" <td>109.8</td>\n",
" <td>77.6</td>\n",
" <td>99.2</td>\n",
" <td>75.4</td>\n",
" <td>134.5</td>\n",
" <td>8.9</td>\n",
" <td>9.8</td>\n",
" <td>28.1</td>\n",
" <td>...</td>\n",
" <td>28.5</td>\n",
" <td>5.69999</td>\n",
" <td>11.1</td>\n",
" <td>23.4001</td>\n",
" <td>4.79999</td>\n",
" <td>73.6999</td>\n",
" <td>5.10001</td>\n",
" <td>3.2</td>\n",
" <td>25.5001</td>\n",
" <td>4.39999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8768</th>\n",
" <td>AFFX-HUMRGE/M10098_M_at</td>\n",
" <td>56.1</td>\n",
" <td>57.3</td>\n",
" <td>104.8</td>\n",
" <td>201.9</td>\n",
" <td>71.8</td>\n",
" <td>189</td>\n",
" <td>39.7</td>\n",
" <td>13</td>\n",
" <td>63</td>\n",
" <td>...</td>\n",
" <td>30.4</td>\n",
" <td>51.5</td>\n",
" <td>32.9999</td>\n",
" <td>28.7</td>\n",
" <td>23.9</td>\n",
" <td>122.5</td>\n",
" <td>6.5</td>\n",
" <td>34.8999</td>\n",
" <td>5.60001</td>\n",
" <td>7.79998</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8769</th>\n",
" <td>AFFX-M27830_3_at</td>\n",
" <td>42.1</td>\n",
" <td>183.5</td>\n",
" <td>41.3</td>\n",
" <td>51.9</td>\n",
" <td>71.1</td>\n",
" <td>24.6</td>\n",
" <td>26.1</td>\n",
" <td>34.6</td>\n",
" <td>50.8</td>\n",
" <td>...</td>\n",
" <td>52.9002</td>\n",
" <td>50.2002</td>\n",
" <td>39.9001</td>\n",
" <td>103.4</td>\n",
" <td>47.8</td>\n",
" <td>120</td>\n",
" <td>38.9999</td>\n",
" <td>42.9001</td>\n",
" <td>31.0001</td>\n",
" <td>43.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8770</th>\n",
" <td>AFFX-M27830_5_at</td>\n",
" <td>203</td>\n",
" <td>132.5</td>\n",
" <td>223.7</td>\n",
" <td>214.5</td>\n",
" <td>175.2</td>\n",
" <td>384.5</td>\n",
" <td>237.7</td>\n",
" <td>200.5</td>\n",
" <td>137.5</td>\n",
" <td>...</td>\n",
" <td>151.5</td>\n",
" <td>166.5</td>\n",
" <td>171</td>\n",
" <td>184</td>\n",
" <td>131.9</td>\n",
" <td>267.201</td>\n",
" <td>41.7001</td>\n",
" <td>57.8999</td>\n",
" <td>179.7</td>\n",
" <td>236.201</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8771</th>\n",
" <td>AFFX-M27830_M_at</td>\n",
" <td>1332</td>\n",
" <td>1404.2</td>\n",
" <td>864.7</td>\n",
" <td>459.7</td>\n",
" <td>942.6</td>\n",
" <td>1549.3</td>\n",
" <td>1923.3</td>\n",
" <td>1180.4</td>\n",
" <td>461.4</td>\n",
" <td>...</td>\n",
" <td>464.701</td>\n",
" <td>623.001</td>\n",
" <td>402.7</td>\n",
" <td>552.599</td>\n",
" <td>367.801</td>\n",
" <td>731.701</td>\n",
" <td>154.1</td>\n",
" <td>94.0998</td>\n",
" <td>414.699</td>\n",
" <td>577.001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8772</th>\n",
" <td>AFFX-r2-Bs-dap-3_at</td>\n",
" <td>15.3</td>\n",
" <td>2.4</td>\n",
" <td>30.6</td>\n",
" <td>5.9</td>\n",
" <td>3.5</td>\n",
" <td>7.4</td>\n",
" <td>9.7</td>\n",
" <td>3.3</td>\n",
" <td>60.5</td>\n",
" <td>...</td>\n",
" <td>5.49999</td>\n",
" <td>1.7</td>\n",
" <td>1.5</td>\n",
" <td>8</td>\n",
" <td>2.80001</td>\n",
" <td>10.2</td>\n",
" <td>3.39999</td>\n",
" <td>1.5</td>\n",
" <td>1.1</td>\n",
" <td>1.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8773</th>\n",
" <td>AFFX-r2-Bs-dap-5_at</td>\n",
" <td>3.5</td>\n",
" <td>7.1</td>\n",
" <td>3.9</td>\n",
" <td>3.9</td>\n",
" <td>1.3</td>\n",
" <td>4.5</td>\n",
" <td>27.3</td>\n",
" <td>8.1</td>\n",
" <td>4.4</td>\n",
" <td>...</td>\n",
" <td>3.2</td>\n",
" <td>10.2</td>\n",
" <td>4.39999</td>\n",
" <td>2.39999</td>\n",
" <td>1.7</td>\n",
" <td>5.10001</td>\n",
" <td>3.70001</td>\n",
" <td>2.89999</td>\n",
" <td>13.7</td>\n",
" <td>2.5</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8774</th>\n",
" <td>AFFX-r2-Bs-dap-M_at</td>\n",
" <td>8.5</td>\n",
" <td>3.3</td>\n",
" <td>2.1</td>\n",
" <td>53.3</td>\n",
" <td>3.2</td>\n",
" <td>17.2</td>\n",
" <td>25.6</td>\n",
" <td>3.2</td>\n",
" <td>3.4</td>\n",
" <td>...</td>\n",
" <td>10.4</td>\n",
" <td>0.7</td>\n",
" <td>0.8</td>\n",
" <td>1.1</td>\n",
" <td>2.19999</td>\n",
" <td>5.79999</td>\n",
" <td>0.299999</td>\n",
" <td>1.3</td>\n",
" <td>3.1</td>\n",
" <td>1.2</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8775</th>\n",
" <td>AFFX-r2-Bs-lys-3_at</td>\n",
" <td>47.1</td>\n",
" <td>55.3</td>\n",
" <td>11.9</td>\n",
" <td>49.1</td>\n",
" <td>17.6</td>\n",
" <td>9.8</td>\n",
" <td>5.9</td>\n",
" <td>40.3</td>\n",
" <td>13.1</td>\n",
" <td>...</td>\n",
" <td>20.9</td>\n",
" <td>11.5</td>\n",
" <td>16.3</td>\n",
" <td>15.1</td>\n",
" <td>32</td>\n",
" <td>20.0999</td>\n",
" <td>9.10002</td>\n",
" <td>27.6001</td>\n",
" <td>10.1</td>\n",
" <td>15.8999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8776</th>\n",
" <td>AFFX-r2-Bs-lys-5_at</td>\n",
" <td>8.2</td>\n",
" <td>13.3</td>\n",
" <td>1.9</td>\n",
" <td>26.6</td>\n",
" <td>6.9</td>\n",
" <td>2</td>\n",
" <td>16.4</td>\n",
" <td>2.7</td>\n",
" <td>5.4</td>\n",
" <td>...</td>\n",
" <td>0.6</td>\n",
" <td>3.70001</td>\n",
" <td>2.99999</td>\n",
" <td>23.8</td>\n",
" <td>1.6</td>\n",
" <td>1.6</td>\n",
" <td>8.4</td>\n",
" <td>1.4</td>\n",
" <td>1.9</td>\n",
" <td>1.1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8777</th>\n",
" <td>AFFX-r2-Bs-lys-M_at</td>\n",
" <td>5.1</td>\n",
" <td>39.4</td>\n",
" <td>35.7</td>\n",
" <td>43.3</td>\n",
" <td>18</td>\n",
" <td>31.7</td>\n",
" <td>17.9</td>\n",
" <td>19</td>\n",
" <td>63.5</td>\n",
" <td>...</td>\n",
" <td>4.30001</td>\n",
" <td>31.8999</td>\n",
" <td>1.1</td>\n",
" <td>4.79999</td>\n",
" <td>18.5</td>\n",
" <td>6.1</td>\n",
" <td>1.4</td>\n",
" <td>25.0001</td>\n",
" <td>6.60002</td>\n",
" <td>32.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8778</th>\n",
" <td>AFFX-r2-Bs-phe-3_at</td>\n",
" <td>77.1</td>\n",
" <td>61.4</td>\n",
" <td>9.2</td>\n",
" <td>79.6</td>\n",
" <td>45.3</td>\n",
" <td>27.3</td>\n",
" <td>16.6</td>\n",
" <td>27.3</td>\n",
" <td>43.7</td>\n",
" <td>...</td>\n",
" <td>57.2999</td>\n",
" <td>35.1</td>\n",
" <td>44</td>\n",
" <td>27.3</td>\n",
" <td>55.5002</td>\n",
" <td>47.8999</td>\n",
" <td>5.00001</td>\n",
" <td>14.5</td>\n",
" <td>7.89999</td>\n",
" <td>49.4</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8779</th>\n",
" <td>AFFX-r2-Bs-phe-5_at</td>\n",
" <td>6.4</td>\n",
" <td>6.7</td>\n",
" <td>1.8</td>\n",
" <td>1.3</td>\n",
" <td>14.8</td>\n",
" <td>4.5</td>\n",
" <td>16.5</td>\n",
" <td>3.3</td>\n",
" <td>47.6</td>\n",
" <td>...</td>\n",
" <td>10.1</td>\n",
" <td>13.6</td>\n",
" <td>5.49999</td>\n",
" <td>1.5</td>\n",
" <td>13.6</td>\n",
" <td>9.10002</td>\n",
" <td>24.4</td>\n",
" <td>15.5</td>\n",
" <td>3.70001</td>\n",
" <td>1.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8780</th>\n",
" <td>AFFX-r2-Bs-phe-M_at</td>\n",
" <td>10</td>\n",
" <td>5.8</td>\n",
" <td>2.8</td>\n",
" <td>10.2</td>\n",
" <td>1.5</td>\n",
" <td>40</td>\n",
" <td>39</td>\n",
" <td>57.5</td>\n",
" <td>61.6</td>\n",
" <td>...</td>\n",
" <td>1.1</td>\n",
" <td>2.89999</td>\n",
" <td>2.19999</td>\n",
" <td>3.2</td>\n",
" <td>9.50002</td>\n",
" <td>12.7</td>\n",
" <td>5.29999</td>\n",
" <td>21.4</td>\n",
" <td>3.39999</td>\n",
" <td>24.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8781</th>\n",
" <td>AFFX-r2-Bs-thr-3_s_at</td>\n",
" <td>12.2</td>\n",
" <td>9</td>\n",
" <td>4</td>\n",
" <td>11.3</td>\n",
" <td>3.4</td>\n",
" <td>3.6</td>\n",
" <td>3.5</td>\n",
" <td>6.3</td>\n",
" <td>14</td>\n",
" <td>...</td>\n",
" <td>7.30002</td>\n",
" <td>2.99999</td>\n",
" <td>4</td>\n",
" <td>24.2999</td>\n",
" <td>13.1</td>\n",
" <td>11.5</td>\n",
" <td>25.6</td>\n",
" <td>8.19998</td>\n",
" <td>19.9</td>\n",
" <td>5.19999</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8782</th>\n",
" <td>AFFX-r2-Bs-thr-5_s_at</td>\n",
" <td>55.8</td>\n",
" <td>49.3</td>\n",
" <td>17.8</td>\n",
" <td>38.6</td>\n",
" <td>97.6</td>\n",
" <td>38.2</td>\n",
" <td>43.2</td>\n",
" <td>56.8</td>\n",
" <td>37.8</td>\n",
" <td>...</td>\n",
" <td>48.4999</td>\n",
" <td>76.0001</td>\n",
" <td>52.6</td>\n",
" <td>72.8002</td>\n",
" <td>61.7998</td>\n",
" <td>42.9999</td>\n",
" <td>31.5999</td>\n",
" <td>36.1001</td>\n",
" <td>60.4999</td>\n",
" <td>84.0002</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8783</th>\n",
" <td>AFFX-r2-Bs-thr-M_s_at</td>\n",
" <td>81.3</td>\n",
" <td>15.3</td>\n",
" <td>42.1</td>\n",
" <td>48.2</td>\n",
" <td>60.2</td>\n",
" <td>8</td>\n",
" <td>41.8</td>\n",
" <td>13.1</td>\n",
" <td>42</td>\n",
" <td>...</td>\n",
" <td>75.3001</td>\n",
" <td>15.1</td>\n",
" <td>12.2</td>\n",
" <td>47.8</td>\n",
" <td>51.6</td>\n",
" <td>62.6998</td>\n",
" <td>24.7</td>\n",
" <td>45.1001</td>\n",
" <td>42.0001</td>\n",
" <td>49.6001</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8784</th>\n",
" <td>AFFX-r2-Ec-bioB-3_at</td>\n",
" <td>259</td>\n",
" <td>266.7</td>\n",
" <td>664.5</td>\n",
" <td>148.4</td>\n",
" <td>281.6</td>\n",
" <td>349.9</td>\n",
" <td>469.3</td>\n",
" <td>152.9</td>\n",
" <td>674.7</td>\n",
" <td>...</td>\n",
" <td>126.7</td>\n",
" <td>99.4997</td>\n",
" <td>76.7998</td>\n",
" <td>152.8</td>\n",
" <td>160.8</td>\n",
" <td>118.3</td>\n",
" <td>105.6</td>\n",
" <td>75.6999</td>\n",
" <td>120.3</td>\n",
" <td>203.401</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8785</th>\n",
" <td>AFFX-r2-Ec-bioB-5_at</td>\n",
" <td>286.5</td>\n",
" <td>185.5</td>\n",
" <td>572.9</td>\n",
" <td>123.2</td>\n",
" <td>251.6</td>\n",
" <td>360.4</td>\n",
" <td>432.7</td>\n",
" <td>183.5</td>\n",
" <td>677.2</td>\n",
" <td>...</td>\n",
" <td>162.3</td>\n",
" <td>96.9998</td>\n",
" <td>144.1</td>\n",
" <td>158.3</td>\n",
" <td>126.5</td>\n",
" <td>170.7</td>\n",
" <td>100.9</td>\n",
" <td>98.9001</td>\n",
" <td>105.7</td>\n",
" <td>160.6</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8786</th>\n",
" <td>AFFX-r2-Ec-bioB-M_at</td>\n",
" <td>370.1</td>\n",
" <td>250</td>\n",
" <td>806.4</td>\n",
" <td>136.9</td>\n",
" <td>332.3</td>\n",
" <td>452.4</td>\n",
" <td>543.7</td>\n",
" <td>168.4</td>\n",
" <td>932.8</td>\n",
" <td>...</td>\n",
" <td>180.9</td>\n",
" <td>130.9</td>\n",
" <td>155.9</td>\n",
" <td>198</td>\n",
" <td>140.3</td>\n",
" <td>212.3</td>\n",
" <td>121.6</td>\n",
" <td>76.7998</td>\n",
" <td>103.7</td>\n",
" <td>191.3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8787</th>\n",
" <td>AFFX-r2-Ec-bioC-3_at</td>\n",
" <td>1353.8</td>\n",
" <td>1032.4</td>\n",
" <td>2539.7</td>\n",
" <td>646.1</td>\n",
" <td>1303.8</td>\n",
" <td>1805.9</td>\n",
" <td>2030.1</td>\n",
" <td>777.4</td>\n",
" <td>3466.8</td>\n",
" <td>...</td>\n",
" <td>478.299</td>\n",
" <td>549.7</td>\n",
" <td>516.201</td>\n",
" <td>586.2</td>\n",
" <td>528.2</td>\n",
" <td>700.499</td>\n",
" <td>379.201</td>\n",
" <td>262.499</td>\n",
" <td>460.399</td>\n",
" <td>637.902</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8788</th>\n",
" <td>AFFX-r2-Ec-bioC-5_at</td>\n",
" <td>1351.9</td>\n",
" <td>1015.2</td>\n",
" <td>2340.9</td>\n",
" <td>439.1</td>\n",
" <td>1097.6</td>\n",
" <td>1527.3</td>\n",
" <td>2097.1</td>\n",
" <td>696.4</td>\n",
" <td>3240.3</td>\n",
" <td>...</td>\n",
" <td>525.898</td>\n",
" <td>548.501</td>\n",
" <td>619.899</td>\n",
" <td>705.201</td>\n",
" <td>642.601</td>\n",
" <td>899.8</td>\n",
" <td>420.4</td>\n",
" <td>225.7</td>\n",
" <td>478.2</td>\n",
" <td>540.099</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8789</th>\n",
" <td>AFFX-r2-Ec-bioD-3_at</td>\n",
" <td>4456.8</td>\n",
" <td>3188.6</td>\n",
" <td>7993.1</td>\n",
" <td>1845.3</td>\n",
" <td>3985.8</td>\n",
" <td>4621.8</td>\n",
" <td>6283.4</td>\n",
" <td>2112.3</td>\n",
" <td>11969.8</td>\n",
" <td>...</td>\n",
" <td>7876.29</td>\n",
" <td>8033.43</td>\n",
" <td>7867.01</td>\n",
" <td>9144.57</td>\n",
" <td>7400.46</td>\n",
" <td>12090.6</td>\n",
" <td>6472.02</td>\n",
" <td>4458.06</td>\n",
" <td>8437.5</td>\n",
" <td>7842.51</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8790</th>\n",
" <td>AFFX-r2-Ec-bioD-5_at</td>\n",
" <td>3634.6</td>\n",
" <td>2813.5</td>\n",
" <td>6777.1</td>\n",
" <td>1340</td>\n",
" <td>3385.2</td>\n",
" <td>3853.5</td>\n",
" <td>5323.2</td>\n",
" <td>1690.8</td>\n",
" <td>8892.4</td>\n",
" <td>...</td>\n",
" <td>7070.52</td>\n",
" <td>7290.49</td>\n",
" <td>7330.01</td>\n",
" <td>7994.54</td>\n",
" <td>5365.14</td>\n",
" <td>10405.8</td>\n",
" <td>5860.87</td>\n",
" <td>3727.52</td>\n",
" <td>7137.98</td>\n",
" <td>7780.25</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8791</th>\n",
" <td>AFFX-r2-P1-cre-3_at</td>\n",
" <td>15062.4</td>\n",
" <td>10854.6</td>\n",
" <td>19995.1</td>\n",
" <td>6494</td>\n",
" <td>12609.5</td>\n",
" <td>15177.5</td>\n",
" <td>17468.9</td>\n",
" <td>6847.4</td>\n",
" <td>27817.6</td>\n",
" <td>...</td>\n",
" <td>19.3999</td>\n",
" <td>9.69997</td>\n",
" <td>38.6</td>\n",
" <td>9.10002</td>\n",
" <td>22.9001</td>\n",
" <td>8.29999</td>\n",
" <td>21.7</td>\n",
" <td>10.2</td>\n",
" <td>33.4001</td>\n",
" <td>11.7</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8792</th>\n",
" <td>AFFX-r2-P1-cre-5_at</td>\n",
" <td>17679.5</td>\n",
" <td>13325.2</td>\n",
" <td>20964.6</td>\n",
" <td>7346.5</td>\n",
" <td>15322.4</td>\n",
" <td>15541.8</td>\n",
" <td>24135.4</td>\n",
" <td>8037.3</td>\n",
" <td>32044.7</td>\n",
" <td>...</td>\n",
" <td>6.60002</td>\n",
" <td>2</td>\n",
" <td>12.5</td>\n",
" <td>4</td>\n",
" <td>12.7</td>\n",
" <td>7.89999</td>\n",
" <td>6.39999</td>\n",
" <td>4.59999</td>\n",
" <td>4.39999</td>\n",
" <td>0.8</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8793</th>\n",
" <td>!series_matrix_table_end</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>8794 rows × 209 columns</p>\n",
"</div>"
],
"text/plain": [
" Probe GSM25349 GSM25350 GSM25356 GSM25357 \\\n",
"0 1007_s_at 329.9 408.1 258.2 262 \n",
"1 1053_at 419.1 378.6 359.9 612.1 \n",
"2 117_at 70.8 47.9 107.9 114.3 \n",
"3 121_at 908.2 798.4 720.5 798 \n",
"4 1255_g_at 50.9 8 12.9 55.4 \n",
"5 1294_at 510.5 575.6 485.7 345.3 \n",
"6 1316_at 102.6 107.9 55 117.2 \n",
"7 1320_at 9.3 70.7 10.1 27 \n",
"8 1431_at 43.6 37 23 58 \n",
"9 1438_at 48.5 27.8 58.2 48.7 \n",
"10 1487_at 350.7 294.4 366.6 365.3 \n",
"11 1494_f_at 99 144.8 182.1 224.2 \n",
"12 1598_g_at 260.9 353.4 238.2 224.9 \n",
"13 160020_at 237.4 263.5 152.4 234.4 \n",
"14 1729_at 816.9 665.3 459.6 414.4 \n",
"15 1773_at 202.9 174 70.6 155.7 \n",
"16 177_at 153.5 144.5 30.1 92.8 \n",
"17 1861_at 188.2 204.6 103.7 180.8 \n",
"18 200000_s_at 2768.4 2605.6 2058.8 1920.5 \n",
"19 200001_at 2503.7 2881.4 2201.8 2580.7 \n",
"20 200002_at 23153.8 24351.2 17455.6 12257.8 \n",
"21 200003_s_at 23458.2 24298.2 19064.6 15105.3 \n",
"22 200004_at 4972.2 4920.7 6542.7 6028.4 \n",
"23 200005_at 6600.9 7526.9 4004.2 4411.3 \n",
"24 200006_at 9246.7 9750.1 8519.6 8718.4 \n",
"25 200007_at 4917.4 4763.4 5024.4 5265.1 \n",
"26 200008_s_at 4002.4 4280.6 1811.7 1516.4 \n",
"27 200009_at 6565.1 6577.5 4809.4 5354.1 \n",
"28 200010_at 16488.9 15388.9 13689.6 10883.2 \n",
"29 200011_s_at 1532 1347.8 1136.8 1260.5 \n",
"... ... ... ... ... ... \n",
"8764 AFFX-HUMISGF3A/M97935_MA_at 2119.2 1852.2 799.8 1011.7 \n",
"8765 AFFX-HUMISGF3A/M97935_MB_at 998.9 645.2 454.4 411.2 \n",
"8766 AFFX-HUMRGE/M10098_3_at 45.7 75.2 31 353.5 \n",
"8767 AFFX-HUMRGE/M10098_5_at 11.4 109.8 77.6 99.2 \n",
"8768 AFFX-HUMRGE/M10098_M_at 56.1 57.3 104.8 201.9 \n",
"8769 AFFX-M27830_3_at 42.1 183.5 41.3 51.9 \n",
"8770 AFFX-M27830_5_at 203 132.5 223.7 214.5 \n",
"8771 AFFX-M27830_M_at 1332 1404.2 864.7 459.7 \n",
"8772 AFFX-r2-Bs-dap-3_at 15.3 2.4 30.6 5.9 \n",
"8773 AFFX-r2-Bs-dap-5_at 3.5 7.1 3.9 3.9 \n",
"8774 AFFX-r2-Bs-dap-M_at 8.5 3.3 2.1 53.3 \n",
"8775 AFFX-r2-Bs-lys-3_at 47.1 55.3 11.9 49.1 \n",
"8776 AFFX-r2-Bs-lys-5_at 8.2 13.3 1.9 26.6 \n",
"8777 AFFX-r2-Bs-lys-M_at 5.1 39.4 35.7 43.3 \n",
"8778 AFFX-r2-Bs-phe-3_at 77.1 61.4 9.2 79.6 \n",
"8779 AFFX-r2-Bs-phe-5_at 6.4 6.7 1.8 1.3 \n",
"8780 AFFX-r2-Bs-phe-M_at 10 5.8 2.8 10.2 \n",
"8781 AFFX-r2-Bs-thr-3_s_at 12.2 9 4 11.3 \n",
"8782 AFFX-r2-Bs-thr-5_s_at 55.8 49.3 17.8 38.6 \n",
"8783 AFFX-r2-Bs-thr-M_s_at 81.3 15.3 42.1 48.2 \n",
"8784 AFFX-r2-Ec-bioB-3_at 259 266.7 664.5 148.4 \n",
"8785 AFFX-r2-Ec-bioB-5_at 286.5 185.5 572.9 123.2 \n",
"8786 AFFX-r2-Ec-bioB-M_at 370.1 250 806.4 136.9 \n",
"8787 AFFX-r2-Ec-bioC-3_at 1353.8 1032.4 2539.7 646.1 \n",
"8788 AFFX-r2-Ec-bioC-5_at 1351.9 1015.2 2340.9 439.1 \n",
"8789 AFFX-r2-Ec-bioD-3_at 4456.8 3188.6 7993.1 1845.3 \n",
"8790 AFFX-r2-Ec-bioD-5_at 3634.6 2813.5 6777.1 1340 \n",
"8791 AFFX-r2-P1-cre-3_at 15062.4 10854.6 19995.1 6494 \n",
"8792 AFFX-r2-P1-cre-5_at 17679.5 13325.2 20964.6 7346.5 \n",
"8793 !series_matrix_table_end NaN NaN NaN NaN \n",
"\n",
" GSM25358 GSM25359 GSM25360 GSM25361 GSM25377 ... GSM136719 \\\n",
"0 299.2 318.1 338.7 333.2 419.5 ... 325.301 \n",
"1 297.4 305.7 315 363.8 424.8 ... 345.301 \n",
"2 111.2 74.3 107.2 95.6 297.8 ... 172.6 \n",
"3 614.6 503.3 467.5 405.8 894.9 ... 930.602 \n",
"4 27.3 28.9 13.5 13.1 93 ... 7.6 \n",
"5 668.4 585.5 989.8 1219.4 648.2 ... 453.601 \n",
"6 54.1 75.8 114 78.8 133.3 ... 73.8999 \n",
"7 5.1 48.2 10.3 43.9 63.5 ... 9.79999 \n",
"8 36.3 21.4 61 18.7 61.5 ... 35.9 \n",
"9 10.9 15.1 51.6 29 81.6 ... 64.6998 \n",
"10 338.4 272.3 375.8 339.8 552.9 ... 331.001 \n",
"11 148.6 125.6 112.4 162.9 64.2 ... 188.799 \n",
"12 111.5 182.9 184.2 180.9 309.7 ... 397.2 \n",
"13 132.9 127 134.2 150.4 324.9 ... 240.9 \n",
"14 452.9 427.1 598 735.4 393.4 ... 630.901 \n",
"15 11.6 79.8 26.3 92.2 70.3 ... 180.7 \n",
"16 52.5 46.6 213 166 71.6 ... 52.2001 \n",
"17 104.6 140.5 118.1 111.9 122.4 ... 138.7 \n",
"18 2008.9 2357.6 2047.1 2100.4 2312.2 ... 2069.83 \n",
"19 2401.8 2063.1 2041.9 2682.6 2887.1 ... 2450.4 \n",
"20 13091.4 16095.4 15706.6 16687.8 17705.1 ... 14858.5 \n",
"21 14796.8 19148.1 19736.3 19082.2 14373.1 ... 17049 \n",
"22 6322.2 6092.4 4675.1 3975.2 6239.3 ... 6386.9 \n",
"23 3659.7 3415.9 3555.5 4098.4 4211 ... 4296.66 \n",
"24 8974.7 9062.8 9375.2 7783.4 8460.5 ... 7211.58 \n",
"25 5759.1 5963.1 7255.8 5863 4530.8 ... 5305.23 \n",
"26 1397.5 1027.1 845.6 1404.9 2183 ... 3744.09 \n",
"27 5849.7 6040.3 4885 5074.3 5612.3 ... 5574.78 \n",
"28 12046.5 13666.3 12881.1 10966.5 15697.7 ... 14788.6 \n",
"29 1792.5 1704.5 1786.7 1894 1778.3 ... 2032.16 \n",
"... ... ... ... ... ... ... ... \n",
"8764 600.1 588.7 676.9 1039.7 1109.1 ... 3289.38 \n",
"8765 363.3 327.2 301.3 272.3 581.4 ... 1838.74 \n",
"8766 108.4 287.9 91.7 38.6 21.4 ... 76.8999 \n",
"8767 75.4 134.5 8.9 9.8 28.1 ... 28.5 \n",
"8768 71.8 189 39.7 13 63 ... 30.4 \n",
"8769 71.1 24.6 26.1 34.6 50.8 ... 52.9002 \n",
"8770 175.2 384.5 237.7 200.5 137.5 ... 151.5 \n",
"8771 942.6 1549.3 1923.3 1180.4 461.4 ... 464.701 \n",
"8772 3.5 7.4 9.7 3.3 60.5 ... 5.49999 \n",
"8773 1.3 4.5 27.3 8.1 4.4 ... 3.2 \n",
"8774 3.2 17.2 25.6 3.2 3.4 ... 10.4 \n",
"8775 17.6 9.8 5.9 40.3 13.1 ... 20.9 \n",
"8776 6.9 2 16.4 2.7 5.4 ... 0.6 \n",
"8777 18 31.7 17.9 19 63.5 ... 4.30001 \n",
"8778 45.3 27.3 16.6 27.3 43.7 ... 57.2999 \n",
"8779 14.8 4.5 16.5 3.3 47.6 ... 10.1 \n",
"8780 1.5 40 39 57.5 61.6 ... 1.1 \n",
"8781 3.4 3.6 3.5 6.3 14 ... 7.30002 \n",
"8782 97.6 38.2 43.2 56.8 37.8 ... 48.4999 \n",
"8783 60.2 8 41.8 13.1 42 ... 75.3001 \n",
"8784 281.6 349.9 469.3 152.9 674.7 ... 126.7 \n",
"8785 251.6 360.4 432.7 183.5 677.2 ... 162.3 \n",
"8786 332.3 452.4 543.7 168.4 932.8 ... 180.9 \n",
"8787 1303.8 1805.9 2030.1 777.4 3466.8 ... 478.299 \n",
"8788 1097.6 1527.3 2097.1 696.4 3240.3 ... 525.898 \n",
"8789 3985.8 4621.8 6283.4 2112.3 11969.8 ... 7876.29 \n",
"8790 3385.2 3853.5 5323.2 1690.8 8892.4 ... 7070.52 \n",
"8791 12609.5 15177.5 17468.9 6847.4 27817.6 ... 19.3999 \n",
"8792 15322.4 15541.8 24135.4 8037.3 32044.7 ... 6.60002 \n",
"8793 NaN NaN NaN NaN NaN ... NaN \n",
"\n",
" GSM136720 GSM136721 GSM136722 GSM136723 GSM136724 GSM136725 GSM136726 \\\n",
"0 342.899 533.498 384.7 394.899 417.699 380.6 422.8 \n",
"1 537.001 376.201 406.9 347.799 426.201 438.201 431.1 \n",
"2 23.5 63.2998 115.4 182.4 87.6001 80.5002 58 \n",
"3 917.3 794.801 967.099 924.898 950.9 666.601 797.699 \n",
"4 28.5 22.7 8.19998 33.2 23.5 40.7001 19.3 \n",
"5 491 540.2 493.799 401.101 637.601 505.799 350.799 \n",
"6 86.6003 66.3001 86.2002 58.1002 87.2002 87.9999 71.6001 \n",
"7 12.7 14.3 66.4999 20.2 10.4 48.8 31.0001 \n",
"8 34.9999 39.8001 38.1 40.9 45.8999 21 31.0001 \n",
"9 58.7998 10.5 29.8 17.2 53 13 13.9 \n",
"10 247.199 296.4 255.1 260.899 294.199 308.099 371.601 \n",
"11 158.2 117.2 197.099 160.4 185.501 207.4 180.401 \n",
"12 312.201 244.8 391.3 333.4 293.399 259 188 \n",
"13 224.301 200.1 152.9 169.9 276.8 224.2 185.6 \n",
"14 853.602 471.6 340 496.6 411.401 528.5 541.201 \n",
"15 172.4 114.5 136.3 181.001 165 97.5 120.2 \n",
"16 196.3 163.8 123.8 210.001 131 261.999 362.099 \n",
"17 144.9 176.4 159.5 161.2 154.3 123.6 145.3 \n",
"18 1912.44 2248.11 2151.76 2356.61 2005.44 3063.57 2094.22 \n",
"19 2804.64 2373.5 2690.39 2848.53 1494.97 3290.98 3073.78 \n",
"20 17264.2 17396.4 15608 15528.2 22217.4 18027.4 8777.53 \n",
"21 17845.8 16900.8 18612.7 16814.3 22028.7 15497 8648.29 \n",
"22 4874.37 6469.78 6144.16 5810.72 5000.65 4649.95 5662.02 \n",
"23 4468.27 4277.94 3944.43 3787.68 5230.02 4507.46 4657.69 \n",
"24 7143.92 7567.49 7316.81 7878.47 6987.69 8897.6 7650.83 \n",
"25 5259.83 4899.1 5232.92 5756.2 4769.1 4969.9 3872.1 \n",
"26 3615.8 3451.48 3299.66 2911 2722.85 2065.11 2083.37 \n",
"27 6901.53 6481.9 5895.1 5822 7148.38 5256.91 4724.35 \n",
"28 14455.2 14359.3 14784.5 14610.3 19753.2 13155.7 8780.58 \n",
"29 1947.76 1681.34 1953.17 2920.5 1604.6 2473.61 2934.3 \n",
"... ... ... ... ... ... ... ... \n",
"8764 1830.6 3108.71 3062.72 2792.42 2550.21 1969.34 2991.8 \n",
"8765 698.4 1665.11 1481.87 1465.12 1281.93 1191.78 2031.46 \n",
"8766 85.9002 38.3999 113.3 57.4 175.101 53.4001 13.4 \n",
"8767 5.69999 11.1 23.4001 4.79999 73.6999 5.10001 3.2 \n",
"8768 51.5 32.9999 28.7 23.9 122.5 6.5 34.8999 \n",
"8769 50.2002 39.9001 103.4 47.8 120 38.9999 42.9001 \n",
"8770 166.5 171 184 131.9 267.201 41.7001 57.8999 \n",
"8771 623.001 402.7 552.599 367.801 731.701 154.1 94.0998 \n",
"8772 1.7 1.5 8 2.80001 10.2 3.39999 1.5 \n",
"8773 10.2 4.39999 2.39999 1.7 5.10001 3.70001 2.89999 \n",
"8774 0.7 0.8 1.1 2.19999 5.79999 0.299999 1.3 \n",
"8775 11.5 16.3 15.1 32 20.0999 9.10002 27.6001 \n",
"8776 3.70001 2.99999 23.8 1.6 1.6 8.4 1.4 \n",
"8777 31.8999 1.1 4.79999 18.5 6.1 1.4 25.0001 \n",
"8778 35.1 44 27.3 55.5002 47.8999 5.00001 14.5 \n",
"8779 13.6 5.49999 1.5 13.6 9.10002 24.4 15.5 \n",
"8780 2.89999 2.19999 3.2 9.50002 12.7 5.29999 21.4 \n",
"8781 2.99999 4 24.2999 13.1 11.5 25.6 8.19998 \n",
"8782 76.0001 52.6 72.8002 61.7998 42.9999 31.5999 36.1001 \n",
"8783 15.1 12.2 47.8 51.6 62.6998 24.7 45.1001 \n",
"8784 99.4997 76.7998 152.8 160.8 118.3 105.6 75.6999 \n",
"8785 96.9998 144.1 158.3 126.5 170.7 100.9 98.9001 \n",
"8786 130.9 155.9 198 140.3 212.3 121.6 76.7998 \n",
"8787 549.7 516.201 586.2 528.2 700.499 379.201 262.499 \n",
"8788 548.501 619.899 705.201 642.601 899.8 420.4 225.7 \n",
"8789 8033.43 7867.01 9144.57 7400.46 12090.6 6472.02 4458.06 \n",
"8790 7290.49 7330.01 7994.54 5365.14 10405.8 5860.87 3727.52 \n",
"8791 9.69997 38.6 9.10002 22.9001 8.29999 21.7 10.2 \n",
"8792 2 12.5 4 12.7 7.89999 6.39999 4.59999 \n",
"8793 NaN NaN NaN NaN NaN NaN NaN \n",
"\n",
" GSM136727 GSM136729 \n",
"0 232.401 248.3 \n",
"1 296.1 235.1 \n",
"2 152.1 124.6 \n",
"3 787.202 631.299 \n",
"4 50.6999 5.69999 \n",
"5 362.3 528.999 \n",
"6 27.8999 41.5 \n",
"7 14.7 37.9001 \n",
"8 26.1999 22.7 \n",
"9 15.8 12.6 \n",
"10 511.199 567.002 \n",
"11 113.3 152.8 \n",
"12 270.199 200.899 \n",
"13 263.4 182.2 \n",
"14 528.5 348.301 \n",
"15 168.501 136.3 \n",
"16 56.5 130.3 \n",
"17 171 163.4 \n",
"18 2377.45 2558.71 \n",
"19 4708.66 2606.68 \n",
"20 15172.8 15202.3 \n",
"21 13095.6 16126 \n",
"22 6929.81 7499.09 \n",
"23 4719.11 4481.3 \n",
"24 7316.81 7349.85 \n",
"25 4407.67 4308.59 \n",
"26 2721.34 2745.78 \n",
"27 6202.78 5387.87 \n",
"28 13566.9 12124.2 \n",
"29 2557.82 1795.16 \n",
"... ... ... \n",
"8764 1639.34 1781.9 \n",
"8765 734.099 1099.17 \n",
"8766 16 77.9999 \n",
"8767 25.5001 4.39999 \n",
"8768 5.60001 7.79998 \n",
"8769 31.0001 43.6001 \n",
"8770 179.7 236.201 \n",
"8771 414.699 577.001 \n",
"8772 1.1 1.6 \n",
"8773 13.7 2.5 \n",
"8774 3.1 1.2 \n",
"8775 10.1 15.8999 \n",
"8776 1.9 1.1 \n",
"8777 6.60002 32.6 \n",
"8778 7.89999 49.4 \n",
"8779 3.70001 1.3 \n",
"8780 3.39999 24.6001 \n",
"8781 19.9 5.19999 \n",
"8782 60.4999 84.0002 \n",
"8783 42.0001 49.6001 \n",
"8784 120.3 203.401 \n",
"8785 105.7 160.6 \n",
"8786 103.7 191.3 \n",
"8787 460.399 637.902 \n",
"8788 478.2 540.099 \n",
"8789 8437.5 7842.51 \n",
"8790 7137.98 7780.25 \n",
"8791 33.4001 11.7 \n",
"8792 4.39999 0.8 \n",
"8793 NaN NaN \n",
"\n",
"[8794 rows x 209 columns]"
]
},
"execution_count": 9,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"matrix.reset_index().drop('index', 1)"
]
},
{
"cell_type": "code",
"execution_count": 40,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"ethnicity = pd.read_csv('ethnicity.csv')"
]
},
{
"cell_type": "code",
"execution_count": 43,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Unnamed: 0</th>\n",
" <th>ethnicity</th>\n",
" <th>filename</th>\n",
" <th>sample_id</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>1</td>\n",
" <td>CEU</td>\n",
" <td>GSM25349.CEL.gz</td>\n",
" <td>GSM25349</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>2</td>\n",
" <td>CEU</td>\n",
" <td>GSM25350.CEL.gz</td>\n",
" <td>GSM25350</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>3</td>\n",
" <td>CEU</td>\n",
" <td>GSM25356.CEL.gz</td>\n",
" <td>GSM25356</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>4</td>\n",
" <td>CEU</td>\n",
" <td>GSM25357.CEL.gz</td>\n",
" <td>GSM25357</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>5</td>\n",
" <td>CEU</td>\n",
" <td>GSM25358.CEL.gz</td>\n",
" <td>GSM25358</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>6</td>\n",
" <td>CEU</td>\n",
" <td>GSM25359.CEL.gz</td>\n",
" <td>GSM25359</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>7</td>\n",
" <td>CEU</td>\n",
" <td>GSM25360.CEL.gz</td>\n",
" <td>GSM25360</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>8</td>\n",
" <td>CEU</td>\n",
" <td>GSM25361.CEL.gz</td>\n",
" <td>GSM25361</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>9</td>\n",
" <td>CEU</td>\n",
" <td>GSM25377.CEL.gz</td>\n",
" <td>GSM25377</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>10</td>\n",
" <td>CEU</td>\n",
" <td>GSM25378.CEL.gz</td>\n",
" <td>GSM25378</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>11</td>\n",
" <td>CEU</td>\n",
" <td>GSM25385.CEL.gz</td>\n",
" <td>GSM25385</td>\n",
" </tr>\n",
" <tr>\n",
" <th>11</th>\n",
" <td>12</td>\n",
" <td>CEU</td>\n",
" <td>GSM25386.CEL.gz</td>\n",
" <td>GSM25386</td>\n",
" </tr>\n",
" <tr>\n",
" <th>12</th>\n",
" <td>13</td>\n",
" <td>CEU</td>\n",
" <td>GSM25399.CEL.gz</td>\n",
" <td>GSM25399</td>\n",
" </tr>\n",
" <tr>\n",
" <th>13</th>\n",
" <td>14</td>\n",
" <td>CEU</td>\n",
" <td>GSM25400.CEL.gz</td>\n",
" <td>GSM25400</td>\n",
" </tr>\n",
" <tr>\n",
" <th>14</th>\n",
" <td>15</td>\n",
" <td>CEU</td>\n",
" <td>GSM25401.CEL.gz</td>\n",
" <td>GSM25401</td>\n",
" </tr>\n",
" <tr>\n",
" <th>15</th>\n",
" <td>16</td>\n",
" <td>CEU</td>\n",
" <td>GSM25402.CEL.gz</td>\n",
" <td>GSM25402</td>\n",
" </tr>\n",
" <tr>\n",
" <th>16</th>\n",
" <td>17</td>\n",
" <td>CEU</td>\n",
" <td>GSM25409.CEL.gz</td>\n",
" <td>GSM25409</td>\n",
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
" <td>18</td>\n",
" <td>CEU</td>\n",
" <td>GSM25410.CEL.gz</td>\n",
" <td>GSM25410</td>\n",
" </tr>\n",
" <tr>\n",
" <th>18</th>\n",
" <td>19</td>\n",
" <td>CEU</td>\n",
" <td>GSM25426.CEL.gz</td>\n",
" <td>GSM25426</td>\n",
" </tr>\n",
" <tr>\n",
" <th>19</th>\n",
" <td>20</td>\n",
" <td>CEU</td>\n",
" <td>GSM25427.CEL.gz</td>\n",
" <td>GSM25427</td>\n",
" </tr>\n",
" <tr>\n",
" <th>20</th>\n",
" <td>21</td>\n",
" <td>CEU</td>\n",
" <td>GSM25479.CEL.gz</td>\n",
" <td>GSM25479</td>\n",
" </tr>\n",
" <tr>\n",
" <th>21</th>\n",
" <td>22</td>\n",
" <td>CEU</td>\n",
" <td>GSM25480.CEL.gz</td>\n",
" <td>GSM25480</td>\n",
" </tr>\n",
" <tr>\n",
" <th>22</th>\n",
" <td>23</td>\n",
" <td>CEU</td>\n",
" <td>GSM25481.CEL.gz</td>\n",
" <td>GSM25481</td>\n",
" </tr>\n",
" <tr>\n",
" <th>23</th>\n",
" <td>24</td>\n",
" <td>CEU</td>\n",
" <td>GSM25482.CEL.gz</td>\n",
" <td>GSM25482</td>\n",
" </tr>\n",
" <tr>\n",
" <th>24</th>\n",
" <td>25</td>\n",
" <td>CEU</td>\n",
" <td>GSM25524.CEL.gz</td>\n",
" <td>GSM25524</td>\n",
" </tr>\n",
" <tr>\n",
" <th>25</th>\n",
" <td>26</td>\n",
" <td>CEU</td>\n",
" <td>GSM25525.CEL.gz</td>\n",
" <td>GSM25525</td>\n",
" </tr>\n",
" <tr>\n",
" <th>26</th>\n",
" <td>27</td>\n",
" <td>CEU</td>\n",
" <td>GSM25526.CEL.gz</td>\n",
" <td>GSM25526</td>\n",
" </tr>\n",
" <tr>\n",
" <th>27</th>\n",
" <td>28</td>\n",
" <td>CEU</td>\n",
" <td>GSM25527.CEL.gz</td>\n",
" <td>GSM25527</td>\n",
" </tr>\n",
" <tr>\n",
" <th>28</th>\n",
" <td>29</td>\n",
" <td>CEU</td>\n",
" <td>GSM25528.CEL.gz</td>\n",
" <td>GSM25528</td>\n",
" </tr>\n",
" <tr>\n",
" <th>29</th>\n",
" <td>30</td>\n",
" <td>CEU</td>\n",
" <td>GSM25529.CEL.gz</td>\n",
" <td>GSM25529</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" <td>...</td>\n",
" </tr>\n",
" <tr>\n",
" <th>178</th>\n",
" <td>179</td>\n",
" <td>ASN</td>\n",
" <td>GSM136672.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>179</th>\n",
" <td>180</td>\n",
" <td>ASN</td>\n",
" <td>GSM136673.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>180</th>\n",
" <td>181</td>\n",
" <td>HAN</td>\n",
" <td>GSM136674.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>181</th>\n",
" <td>182</td>\n",
" <td>HAN</td>\n",
" <td>GSM136675.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>182</th>\n",
" <td>183</td>\n",
" <td>HAN</td>\n",
" <td>GSM136676.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>183</th>\n",
" <td>184</td>\n",
" <td>HAN</td>\n",
" <td>GSM136677.CEL.gz</td>\n",
" <td>GSM13667</td>\n",
" </tr>\n",
" <tr>\n",
" <th>184</th>\n",
" <td>185</td>\n",
" <td>HAN</td>\n",
" <td>GSM136705.CEL.gz</td>\n",
" <td>GSM13670</td>\n",
" </tr>\n",
" <tr>\n",
" <th>185</th>\n",
" <td>186</td>\n",
" <td>HAN</td>\n",
" <td>GSM136706.CEL.gz</td>\n",
" <td>GSM13670</td>\n",
" </tr>\n",
" <tr>\n",
" <th>186</th>\n",
" <td>187</td>\n",
" <td>HAN</td>\n",
" <td>GSM136707.CEL.gz</td>\n",
" <td>GSM13670</td>\n",
" </tr>\n",
" <tr>\n",
" <th>187</th>\n",
" <td>188</td>\n",
" <td>HAN</td>\n",
" <td>GSM136708.CEL.gz</td>\n",
" <td>GSM13670</td>\n",
" </tr>\n",
" <tr>\n",
" <th>188</th>\n",
" <td>189</td>\n",
" <td>HAN</td>\n",
" <td>GSM136709.CEL.gz</td>\n",
" <td>GSM13670</td>\n",
" </tr>\n",
" <tr>\n",
" <th>189</th>\n",
" <td>190</td>\n",
" <td>HAN</td>\n",
" <td>GSM136710.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>190</th>\n",
" <td>191</td>\n",
" <td>HAN</td>\n",
" <td>GSM136711.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>191</th>\n",
" <td>192</td>\n",
" <td>HAN</td>\n",
" <td>GSM136712.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>192</th>\n",
" <td>193</td>\n",
" <td>HAN</td>\n",
" <td>GSM136713.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>193</th>\n",
" <td>194</td>\n",
" <td>HAN</td>\n",
" <td>GSM136714.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>194</th>\n",
" <td>195</td>\n",
" <td>HAN</td>\n",
" <td>GSM136715.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>195</th>\n",
" <td>196</td>\n",
" <td>HAN</td>\n",
" <td>GSM136716.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>196</th>\n",
" <td>197</td>\n",
" <td>HAN</td>\n",
" <td>GSM136717.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>197</th>\n",
" <td>198</td>\n",
" <td>HAN</td>\n",
" <td>GSM136718.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>198</th>\n",
" <td>199</td>\n",
" <td>HAN</td>\n",
" <td>GSM136719.CEL.gz</td>\n",
" <td>GSM13671</td>\n",
" </tr>\n",
" <tr>\n",
" <th>199</th>\n",
" <td>200</td>\n",
" <td>HAN</td>\n",
" <td>GSM136720.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>200</th>\n",
" <td>201</td>\n",
" <td>HAN</td>\n",
" <td>GSM136721.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>201</th>\n",
" <td>202</td>\n",
" <td>HAN</td>\n",
" <td>GSM136722.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>202</th>\n",
" <td>203</td>\n",
" <td>HAN</td>\n",
" <td>GSM136723.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>203</th>\n",
" <td>204</td>\n",
" <td>HAN</td>\n",
" <td>GSM136724.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>204</th>\n",
" <td>205</td>\n",
" <td>CEU</td>\n",
" <td>GSM136725.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>205</th>\n",
" <td>206</td>\n",
" <td>CEU</td>\n",
" <td>GSM136726.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>206</th>\n",
" <td>207</td>\n",
" <td>CEU</td>\n",
" <td>GSM136727.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" <tr>\n",
" <th>207</th>\n",
" <td>208</td>\n",
" <td>ASN</td>\n",
" <td>GSM136729.CEL.gz</td>\n",
" <td>GSM13672</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>208 rows × 4 columns</p>\n",
"</div>"
],
"text/plain": [
" Unnamed: 0 ethnicity filename sample_id\n",
"0 1 CEU GSM25349.CEL.gz GSM25349\n",
"1 2 CEU GSM25350.CEL.gz GSM25350\n",
"2 3 CEU GSM25356.CEL.gz GSM25356\n",
"3 4 CEU GSM25357.CEL.gz GSM25357\n",
"4 5 CEU GSM25358.CEL.gz GSM25358\n",
"5 6 CEU GSM25359.CEL.gz GSM25359\n",
"6 7 CEU GSM25360.CEL.gz GSM25360\n",
"7 8 CEU GSM25361.CEL.gz GSM25361\n",
"8 9 CEU GSM25377.CEL.gz GSM25377\n",
"9 10 CEU GSM25378.CEL.gz GSM25378\n",
"10 11 CEU GSM25385.CEL.gz GSM25385\n",
"11 12 CEU GSM25386.CEL.gz GSM25386\n",
"12 13 CEU GSM25399.CEL.gz GSM25399\n",
"13 14 CEU GSM25400.CEL.gz GSM25400\n",
"14 15 CEU GSM25401.CEL.gz GSM25401\n",
"15 16 CEU GSM25402.CEL.gz GSM25402\n",
"16 17 CEU GSM25409.CEL.gz GSM25409\n",
"17 18 CEU GSM25410.CEL.gz GSM25410\n",
"18 19 CEU GSM25426.CEL.gz GSM25426\n",
"19 20 CEU GSM25427.CEL.gz GSM25427\n",
"20 21 CEU GSM25479.CEL.gz GSM25479\n",
"21 22 CEU GSM25480.CEL.gz GSM25480\n",
"22 23 CEU GSM25481.CEL.gz GSM25481\n",
"23 24 CEU GSM25482.CEL.gz GSM25482\n",
"24 25 CEU GSM25524.CEL.gz GSM25524\n",
"25 26 CEU GSM25525.CEL.gz GSM25525\n",
"26 27 CEU GSM25526.CEL.gz GSM25526\n",
"27 28 CEU GSM25527.CEL.gz GSM25527\n",
"28 29 CEU GSM25528.CEL.gz GSM25528\n",
"29 30 CEU GSM25529.CEL.gz GSM25529\n",
".. ... ... ... ...\n",
"178 179 ASN GSM136672.CEL.gz GSM13667\n",
"179 180 ASN GSM136673.CEL.gz GSM13667\n",
"180 181 HAN GSM136674.CEL.gz GSM13667\n",
"181 182 HAN GSM136675.CEL.gz GSM13667\n",
"182 183 HAN GSM136676.CEL.gz GSM13667\n",
"183 184 HAN GSM136677.CEL.gz GSM13667\n",
"184 185 HAN GSM136705.CEL.gz GSM13670\n",
"185 186 HAN GSM136706.CEL.gz GSM13670\n",
"186 187 HAN GSM136707.CEL.gz GSM13670\n",
"187 188 HAN GSM136708.CEL.gz GSM13670\n",
"188 189 HAN GSM136709.CEL.gz GSM13670\n",
"189 190 HAN GSM136710.CEL.gz GSM13671\n",
"190 191 HAN GSM136711.CEL.gz GSM13671\n",
"191 192 HAN GSM136712.CEL.gz GSM13671\n",
"192 193 HAN GSM136713.CEL.gz GSM13671\n",
"193 194 HAN GSM136714.CEL.gz GSM13671\n",
"194 195 HAN GSM136715.CEL.gz GSM13671\n",
"195 196 HAN GSM136716.CEL.gz GSM13671\n",
"196 197 HAN GSM136717.CEL.gz GSM13671\n",
"197 198 HAN GSM136718.CEL.gz GSM13671\n",
"198 199 HAN GSM136719.CEL.gz GSM13671\n",
"199 200 HAN GSM136720.CEL.gz GSM13672\n",
"200 201 HAN GSM136721.CEL.gz GSM13672\n",
"201 202 HAN GSM136722.CEL.gz GSM13672\n",
"202 203 HAN GSM136723.CEL.gz GSM13672\n",
"203 204 HAN GSM136724.CEL.gz GSM13672\n",
"204 205 CEU GSM136725.CEL.gz GSM13672\n",
"205 206 CEU GSM136726.CEL.gz GSM13672\n",
"206 207 CEU GSM136727.CEL.gz GSM13672\n",
"207 208 ASN GSM136729.CEL.gz GSM13672\n",
"\n",
"[208 rows x 4 columns]"
]
},
"execution_count": 43,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"ethnicity['sample_id'] = ethnicity['filename'].apply(lambda x: x[:8])\n",
"ethnicity"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.2"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
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