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Rbundler builds using test(fresh=TRUE) but errors out with test() and check(). See lines 1, 131 and 292 for each of the calls.
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| > test() # Running test within the R session causes some crazy initialization error. Search for: "Error: 2:1: unexpected input" | |
| Testing rbundler | |
| Loading required package: testthat | |
| Loading rbundler | |
| A developer can bundle a package and it's dependencies. : * installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...* installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...* installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...trying URL 'http://cran.rstudio.com/src/contrib/tempdisagg_0.23.tar.gz' | |
| Content type 'application/x-gzip' length 29540 bytes (28 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 28 Kb | |
| Error: 2:1: unexpected input | |
| 1: .First <- function() { | |
| 2: ? | |
| ^ | |
| Execution halted | |
| The downloaded source packages are in | |
| ‘/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpSU2vtd/downloaded_packages’ | |
| trying URL 'http://cran.rstudio.com/src/contrib/tempdisagg_0.23.tar.gz' | |
| Content type 'application/x-gzip' length 29540 bytes (28 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 28 Kb | |
| Error: 2:1: unexpected input | |
| 1: .First <- function() { | |
| 2: ? | |
| ^ | |
| Execution halted | |
| The downloaded source packages are in | |
| ‘/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpSU2vtd/downloaded_packages’ | |
| ERROR: dependency 'tempdisagg' is not available for package 'simpledependencies' | |
| * removing '/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpSU2vtd/bundle-test-1393186959.45888/simpledependencies/.Rbundle/simpledependencies' | |
| 1* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| .....* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| .....* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| ..... | |
| rbundler can create a package description dynamically : ... | |
| 1. Error: Bundling a package with dependencies creates a bundle directory with the project installed and all dependencies installed. | |
| Command failed (1) | |
| 1: bundle_and_validate(overwrite = FALSE) at test-bundle.r:67 | |
| 2: bundle(pkg = package$path, bundle_path = lib, overwrite = overwrite) at test-bundle.r:21 | |
| 3: install(pkg) at /Users/yoni.ben-meshulam/opower/workspace/rbundler/R/bundle.r:73 | |
| 4: R(paste("CMD INSTALL ", shQuote(built_path), " ", opts, sep = ""), quiet = quiet) | |
| 5: in_dir(path, system_check(r_path, options, c(r_env_vars(), env_vars), ...)) | |
| 6: force(code) | |
| 7: system_check(r_path, options, c(r_env_vars(), env_vars), ...) | |
| 8: stop("Command failed (", status, ")", call. = FALSE) | |
| Warning messages: | |
| 1: In install.packages(package, repos = repos, contriburl = contriburl, : | |
| installation of package ‘tempdisagg’ had non-zero exit status | |
| 2: In install.packages(deps, dependencies = dependencies) : | |
| installation of package ‘tempdisagg’ had non-zero exit status | |
| > test(fresh=TRUE) #running test with fresh=TRUE fixes the issue | |
| Testing rbundler | |
| A developer can bundle a package and it's dependencies. : * installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...* installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...* installing *source* package 'nodependencies' ... | |
| ** help | |
| No man pages found in package 'nodependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (nodependencies) | |
| ...trying URL 'http://cran.rstudio.com/src/contrib/tempdisagg_0.23.tar.gz' | |
| Content type 'application/x-gzip' length 29540 bytes (28 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 28 Kb | |
| * installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| The downloaded source packages are in | |
| '/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpzoY1l0/downloaded_packages' | |
| * installing *source* package 'simpledependencies' ... | |
| ** help | |
| No man pages found in package 'simpledependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (simpledependencies) | |
| ....trying URL 'http://cran.rstudio.com/src/contrib/tempdisagg_0.23.tar.gz' | |
| Content type 'application/x-gzip' length 29540 bytes (28 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 28 Kb | |
| * installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| The downloaded source packages are in | |
| '/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpzoY1l0/downloaded_packages' | |
| * installing *source* package 'simpledependencies' ... | |
| ** help | |
| No man pages found in package 'simpledependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (simpledependencies) | |
| ....trying URL 'http://cran.rstudio.com/src/contrib/tempdisagg_0.23.tar.gz' | |
| Content type 'application/x-gzip' length 29540 bytes (28 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 28 Kb | |
| * installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| The downloaded source packages are in | |
| '/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpzoY1l0/downloaded_packages' | |
| * installing *source* package 'simpledependencies' ... | |
| ** help | |
| No man pages found in package 'simpledependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (simpledependencies) | |
| ....* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| .....* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| .....* installing *source* package 'tempdisagg' ... | |
| ** package 'tempdisagg' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** demo | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (tempdisagg) | |
| * installing *source* package 'versioneddependencies' ... | |
| ** help | |
| No man pages found in package 'versioneddependencies' | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (versioneddependencies) | |
| ..... | |
| rbundler can create a package description dynamically : ... | |
| > check() # Running devtools:::check() causes the same issues that running test() did: | |
| Updating rbundler documentation | |
| Loading rbundler | |
| pdflatex not found. Not building PDF vignettes. | |
| '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD build \ | |
| '/Users/yoni.ben-meshulam/opower/workspace/rbundler' --no-manual \ | |
| --no-resave-data --no-vignettes | |
| Warning: '--no-vignettes' is deprecated: | |
| use '--no-build-vignettes' instead | |
| * checking for file '/Users/yoni.ben-meshulam/opower/workspace/rbundler/DESCRIPTION' ... OK | |
| * preparing 'rbundler': | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking for LF line-endings in source and make files | |
| * checking for empty or unneeded directories | |
| * building 'rbundler_0.4.0.tar.gz' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| Warning: invalid uid value replaced by that for user 'nobody' | |
| pdflatex not found! Not building PDF manual or vignettes. | |
| If you are planning to release this package, please run a check with manual and vignettes beforehand. | |
| '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD check \ | |
| '/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T//RtmpSU2vtd/rbundler_0.4.0.tar.gz' \ | |
| --timings --no-rebuild-vignettes --no-manual | |
| Warning: '--no-rebuild-vignettes' is deprecated: | |
| use '--no-build-vignettes' instead | |
| * using log directory '/private/var/folders/6w/l7mkwttn4934cn30c27vk4g8jm01gc/T/RtmpSU2vtd/rbundler.Rcheck' | |
| * using R version 3.0.2 (2013-09-25) | |
| * using platform: x86_64-apple-darwin10.8.0 (64-bit) | |
| * using session charset: ASCII | |
| * using option '--no-build-vignettes' | |
| * checking for file 'rbundler/DESCRIPTION' ... OK | |
| * this is package 'rbundler' version '0.4.0' | |
| * checking package namespace information ... OK | |
| * checking package dependencies ... OK | |
| * checking if this is a source package ... OK | |
| * checking if there is a namespace ... OK | |
| * checking for executable files ... OK | |
| * checking for hidden files and directories ... OK | |
| * checking for portable file names ... OK | |
| * checking for sufficient/correct file permissions ... OK | |
| * checking whether package 'rbundler' can be installed ... OK | |
| * checking installed package size ... OK | |
| * checking package directory ... OK | |
| * checking DESCRIPTION meta-information ... OK | |
| * checking top-level files ... OK | |
| * checking for left-over files ... OK | |
| * checking index information ... OK | |
| * checking package subdirectories ... OK | |
| * checking R files for non-ASCII characters ... OK | |
| * checking R files for syntax errors ... OK | |
| * checking whether the package can be loaded ... OK | |
| * checking whether the package can be loaded with stated dependencies ... OK | |
| * checking whether the package can be unloaded cleanly ... OK | |
| * checking whether the namespace can be loaded with stated dependencies ... OK | |
| * checking whether the namespace can be unloaded cleanly ... OK | |
| * checking loading without being on the library search path ... OK | |
| * checking dependencies in R code ... OK | |
| * checking S3 generic/method consistency ... OK | |
| * checking replacement functions ... OK | |
| * checking foreign function calls ... OK | |
| * checking R code for possible problems ... OK | |
| * checking Rd files ... OK | |
| * checking Rd metadata ... OK | |
| * checking Rd cross-references ... OK | |
| * checking for missing documentation entries ... OK | |
| * checking for code/documentation mismatches ... OK | |
| * checking Rd \usage sections ... OK | |
| * checking Rd contents ... OK | |
| * checking for unstated dependencies in examples ... OK | |
| * checking examples ... OK | |
| * checking for unstated dependencies in tests ... OK | |
| * checking tests ... | |
| Running 'test-all.R' | |
| ERROR | |
| Running the tests in 'tests/test-all.R' failed. | |
| Last 13 lines of output: | |
| 4: R(paste("CMD INSTALL ", shQuote(built_path), " ", opts, sep = ""), quiet = quiet) | |
| 5: in_dir(path, system_check(r_path, options, c(r_env_vars(), env_vars), ...)) | |
| 6: force(code) | |
| 7: system_check(r_path, options, c(r_env_vars(), env_vars), ...) | |
| 8: stop("Command failed (", status, ")", call. = FALSE) | |
| Error: Test failures | |
| In addition: Warning messages: | |
| 1: In install.packages(package, repos = repos, contriburl = contriburl, : | |
| installation of package 'tempdisagg' had non-zero exit status | |
| 2: In install.packages(deps, dependencies = dependencies) : | |
| installation of package 'tempdisagg' had non-zero exit status | |
| Execution halted | |
| Error: Command failed (1) |
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