Sample 2 prompt (from `2023-09-15T19:24:55.041736.json`)

precision_v2_prompt2.txt

A list of records will be provided from an ontology of disease terms. Each record will contain information describing a single term.

Assign a `precision` label to each of these terms that captures the extent to which they correspond to patient populations with distinguishing clinical, demographic, physiological or molecular characteristics. Use exactly one of the following values for this label:

- `high`: High precision terms have the greatest ontological specificity, sometimes (but not necessarily) correspond to small groups of relatively homogeneous patients, often have greater diagnostic certainty and typically represent the forefront of clinical practice.
- `medium`: Medium precision terms are the ontological ancestors of `high` precision terms (if any are known), often include indications in later stage clinical trials and generally reflect groups of patients assumed to be suffering from a condition with a shared, or at least similar, physiological or environmental origin.
- `low`: Low precision terms are the ontological ancestors of both `medium` and `high` precision terms, group collections of diseases with *some* shared characteristics and typically connote a relatively heterogenous patient population. They are often terms used within the ontology for organizational purposes.

The records provided will already have the following fields:

- `id`: A string identifier for the term
- `label`: A descriptive name for the term
- `description`: A longer, possibly truncated description of what the term is; may be NA (i.e. absent)

Here is a list of such records (in YAML format) where the `precision` label is already assigned for 3 examples at each level of precision:

--- BEGIN EXAMPLES ---
- id: EFO:1000639
  label: acquired metabolic disease
  definition: A disease of metabolism that has _material_basis_in enzyme deficiency or accumulation of enzymes or toxins which interfere with normal function due to an endocrine organ disease, organ malfunction, inadequate intake, dietary deficiency, or ...
  precision: low
- id: Orphanet:68336
  label: Rare genetic tumor
  definition: NA
  precision: low
- id: EFO:0005548
  label: developmental disorder of mental health
  definition: A disease of mental health that occur during a child’s developmental period between birth and age 18 resulting in retarding of the child’s
  precision: low
- id: EFO:0005548
  label: inflammatory bowel disease
  definition: A spectrum of small and large bowel inflammatory diseases of unknown etiology. It includes Crohn's disease, ulcerative colitis, and colitis of indeterminate type.
  precision: medium
- id: EFO:0000384
  label: Crohn's disease
  definition: A gastrointestinal disorder characterized by chronic inflammation involving all layers of the intestinal wall, noncaseating granulomas affecting the intestinal wall and regional lymph nodes, and transmural fibrosis. Crohn disease most ...
  precision: medium
- id: MONDO:0045020
  label: glycine metabolism disease
  definition: A disease that has its basis in the disruption of glycine metabolic process.
  precision: medium
- id: EFO:1000277
  label: Gastric Small Cell Neuroendocrine Carcinoma
  definition: An aggressive, high-grade and poorly differentiated carcinoma with neuroendocrine differentiation that arises from the stomach. It is characterized by the presence of malignant small cells.
  precision: high
- id: MONDO:0015634
  label: isolated osteopoikilosis
  definition: A osteopoikilosis (disease) that is not part of a larger syndrome.
  precision: high
- id: Orphanet:98755
  label: Spinocerebellar ataxia type 1
  definition: Spinocerebellar ataxia type 1 (SCA1) is a subtype of type I autosomal dominant cerebellar ataxia (ADCA type I; see this term) characterized by dysarthria, writing difficulties, limb ataxia, and commonly nystagmus and saccadic abnormalities.
  precision: high
- id: Orphanet:75325
  label: Osteosclerosis - ichthyosis - premature ovarian failure
  definition: NA
  precision: high
- id: EFO:0007237
  label: dipetalonemiasis
  definition: A filariasis that is a zoonotic infection caused by the nematode of the genus Dipetalonema.
  precision: high
- id: MONDO:0013742
  label: familial mesial temporal lobe epilepsy with febrile seizures
  definition: NA
  precision: high
- id: MONDO:0002321
  label: sensory peripheral neuropathy
  definition: Inflammation or degeneration of the sensory nerves.
  precision: medium
- id: EFO:1000646
  label: papillary carcinoma
  definition: A malignant epithelial neoplasm characterized by a papillary growth pattern.
  precision: medium
- id: EFO:0011057
  label: neurotoxicity
  definition: Toxicity that causes injury to the central or peripheral nervous system or damages its function.
  precision: low
--- END EXAMPLES ---

Here are the records for which this `precision` label is not yet known:

--- BEGIN RECORDS ---
- id: Orphanet:314555
  label: Craniofacial dysplasia-osteopenia syndrome
  definition: null
- id: Orphanet:228429
  label: Generalized congenital lipodystrophy with myopathy
  definition: null
- id: MONDO:0020072
  label: childhood-onset epilepsy syndrome
  definition: A epilepsy syndrome that occurs during childhood.
- id: MONDO:0012991
  label: Kahrizi syndrome
  definition: An autosomal recessive disease that is characterized by mental retardation, cataracts, coloboma, kyphosis, and coarse facial features and has material basis in mutation in the SRD5A3 gene.
- id: MONDO:0009012
  label: multiple pterygium-malignant hyperthermia syndrome
  definition: Malignant hyperthermia-arthrogryposis-torticollisis an extremely rare arthrogryposis syndrome, described in only two pairs of siblings from two unrelated families to date, and characterized by the association of arthrogryposis, congenital torticollis, dysmorphic facial features (i.e. asymmetry of the face, myopathic facial movements, ptosis, posteriorly rotated ears, cleft palate), progressive scoliosis and episodes of malignant hyperthermia. There have been no further descriptions in the literature since 1988.
- id: MONDO:0008670
  label: Waardenburg syndrome type 1
  definition: Waardenburg syndrome type 1 (WS1) is a subtype of Waardenburg syndrome (WS), disorder characterized by congenital deafness, minor defects in structures arising from neural crest resulting in pigmentation anomalies of eyes, hair, and skin, in combination with dystopia canthorum.
- id: Orphanet:319199
  label: Autosomal recessive spastic paraplegia type 53
  definition: null
- id: EFO:1001897
  label: Morvan syndrome
  definition: Morvan syndrome is a rare autoimmune/paraneoplastic disorder involving antibodies to the voltage-gated potassium channel complex. It is defined by subacute encephalopathy, neuromuscular hyperexcitability, dysautonomia, and sleep disturbance. [PMID:27224435]
- id: MONDO:0007510
  label: Clouston syndrome
  definition: Clouston syndrome (or hidrotic ectodermal dysplasia) is characterised by the clinical triad of nail dystrophy, alopecia, and palmoplantar hyperkeratosis.
- id: EFO:0008571
  label: viral conjunctivitis
  definition: Conjunctivitis resulting from viral infection.
- id: EFO:0007293
  label: haemonchiasis
  definition: A trichostrongyloidiasis that involves parasitic infection of the ruminant abomasum by nematodes of the genus Haemonchus resulting in anemia, dehydration, diarrhea and accumulation of fluid in the abdomen, gut wall, thoracic cavity and submandibular tissue.
- id: MONDO:0007321
  label: autosomal dominant chondrodysplasia punctata
  definition: Autosomal dominant form of chondrodysplasia punctata.
- id: MONDO:0008842
  label: ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia
  definition: A rare autosomal recessive cerebellar ataxia (ARCA), characterized by progressive cerebellar ataxia associated with oculomotor apraxia, severe neuropathy, and hypoalbuminemia.
- id: MONDO:0009262
  label: GM1 gangliosidosis type 3
  definition: GM1 gangliosidosis type 3 is a mild, chronic, adult form of GM1 gangliosidosis characterized by onset generally during childhood or adolescence and by cerebellar dysfunction.
- id: MONDO:0014121
  label: autosomal dominant childhood-onset proximal spinal muscular atrophy with contractures
  definition: null
- id: EFO:1000802
  label: alcoholic liver cirrhosis
  definition: A disorder of the liver characterized by the presence of fibrotic scar tissue instead of healthy liver tissue. This condition is attributed to excessive consumption of alcoholic beverages.
- id: Orphanet:171607
  label: X-linked spastic paraplegia type 34
  definition: null
- id: Orphanet:357332
  label: Syndactyly - camptodactyly and clinodactyly of fifth fingers - bifid toes
  definition: null
- id: MONDO:0000949
  label: conjunctival degeneration
  definition: null
- id: MONDO:0008458
  label: spinocerebellar ataxia type 2
  definition: Spinocerebellar ataxia type 2 (SCA2) is a subtype of type I autosomal dominant cerebellar ataxia (ADCA type I) characterized by truncal ataxia, dysarthria, slowed saccades and less commonly ophthalmoparesis and chorea.
- id: EFO:1000436
  label: Ovarian Tumor of the Thecoma/Fibroma Group
  definition: A group of neoplasms that arise from the ovary and represent a spectrum of tumors ranging from neoplasms that are composed entirely of fibroblasts to those that are composed predominantly of theca cells.
- id: EFO:0007408
  label: orbital cancer
  definition: A bone cancer that is located_in the area behind the eye and derives_from the orbit or secondarily derives_from an adjacent source (eyelid, paranasal sinus, or intracranial compartment). It results_in the eye pushing forward causing a bulging of the eye called proptosis.
- id: MONDO:0002516
  label: digestive system cancer
  definition: A primary or metastatic malignant neoplasm involving any part of the digestive system.
- id: MONDO:0014601
  label: autosomal recessive spinocerebellar ataxia 20
  definition: Any autosomal recessive cerebellar ataxia in which the cause of the disease is a mutation in the SNX14 gene.
- id: EFO:1001145
  label: Raynaud disease
  definition: An episodic vasoconstriction resulting in discoloration of the skin and pain in the affected areas, often involving fingers or toes. Classically associated with triphasic color changes (white, blue, red) but may be biphasic. Often occurs in response to cold temperatures or emotional stress. May be primary or secondary to an underlying autoimmune disease.
- id: MONDO:0008935
  label: cerebellar ataxia-hypogonadism syndrome
  definition: Cerebellar ataxia-hypogonadism syndrome is a very rare autosomal recessive neurodegenerative disorder characterized by the combination of progressive cerebellar ataxia with onset from early childhood to the fourth decade, and hypogonadotropic hypogonadism (delayed puberty and lack of secondary sex characteristics). Cerebellar ataxia-hypogonadism syndrome belongs to a clinical continuum of neurodegenerative disorders along with clinically overlapping disorders such as ataxia-hypogonadism-choroidal dystrophy syndrome.
- id: OTAR:0000010
  label: respiratory or thoracic disease
  definition: A disease affecting the respiratory system or other thoracic organs.
- id: MONDO:0009204
  label: lethal faciocardiomelic dysplasia
  definition: Lethal faciocardiomelic dysplasia is an extremely rare polymalformative syndrome.
- id: MONDO:0017296
  label: glycerol kinase deficiency, adult form
  definition: Adult glycerol kinase deficiency (GKD) is an uncommon form of GKD diagnosed fortuitously and characterized by pseudohypertriglyceridemia in otherwise healthy adults.
- id: MONDO:0005405
  label: childhood onset asthma
  definition: Asthma that starts in childhood.
- id: Orphanet:98196
  label: Malformation syndrome with hamartosis
  definition: null
- id: MONDO:0016487
  label: beta-thalassemia intermedia
  definition: Beta-thalassemia (BT) intermedia is a form of BT characterized by mild to moderate anemia which does not or only occasionally requires transfusion.
- id: MONDO:0013536
  label: heme oxygenase 1 deficiency
  definition: null
- id: MONDO:0016908
  label: partial monosomy of the long arm of chromosome 9
  definition: null
- id: MONDO:0017740
  label: disorder of protein N-glycosylation
  definition: A disease that has its basis in the disruption of protein N-linked glycosylation.
- id: EFO:1000517
  label: Salivary Gland Large Cell Carcinoma
  definition: A rare, highly aggressive carcinoma that arises from the salivary gland, predominantly the parotid gland. It is characterized by the presence of large pleomorphic malignant cells with abundant cytoplasm. Patients usually present with a rapidly growing mass.
- id: Orphanet:1292
  label: Brachymorphism - onychodysplasia - dysphalangism
  definition: Brachymorphism-onychodysplasia-dysphalangism (BOD) is a very rare malformation syndrome that is characterized by short stature, hypoplastic fifth digits with tiny dysplastic nails, facial dysmorphism with coarse features including a wide mouth and broad nose, and mild intellectual disability. It has been suggested that Coffin-Siris syndrome (see this term) and BOD syndrome are perhaps allelic variants.
--- END RECORDS ---

Requirements:

- Assign a `precision` label for ALL records
- Respond in CSV format using a pipe (i.e. "|") delimiter with the headers `id`, `precision` where `id` is the `id` associated with each record
- Include the headers in the result
- Respond with ONLY the CSV content, do not include explanation of any kind

CSV: