A tiny script to refocus on a terminal once a command has finished running. You will need xdotool installed.

refocus

#!/bin/bash

WINDOW_NAME=`xdotool getwindowname $WINDOWID`

shopt -s expand_aliases

source ~/.aliases

eval $@

xdotool windowactivate --sync $WINDOWID
CURRENT_WINDOW_NAME=`xdotool getwindowname $WINDOWID`
while [ "$CURRENT_WINDOW_NAME" != "$WINDOW_NAME" ]; do
    xdotool key --window $WINDOWID Ctrl+Right
    CURRENT_WINDOW_NAME=`xdotool getwindowname $WINDOWID`
done