Yasset Perez-Riverol ypriverol
ypriverol
/ protein_fasta_filter.py
Created
August 10, 2023 05:04
Filter a protein fasta with a file with a list of protein accessions
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| import sys | |
| def read_protein_accessions(filename): | |
| with open(filename, 'r') as file: | |
| protein_accessions = [line.strip() for line in file.readlines()] | |
| return protein_accessions | |
| def read_proteins(input_fasta: str): | |
| current_protein = None | |
| current_sequence = "" |
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| {% set version = "2.7.1" %} | |
| {% set sha256 = "10a78d3007413a6d4c983d2acbf03ef84b622b82bd9a59c6bd9fbdde9d0298ca" %} | |
| package: | |
| name: blast | |
| version: {{ version }} | |
| source: | |
| url: https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/{{ version }}/ncbi-blast-{{ version }}+-src.tar.gz | |
| sha256: {{ sha256 }} |
ypriverol
/ gist:05002f5c6477034fef0f05fae25e4f8b
Created
May 9, 2018 07:18
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| ################## BASE IMAGE ###################### | |
| FROM mono:latest | |
| ################## METADATA ###################### | |
| LABEL base_image="mono:latest" | |
| LABEL version="1" | |
| LABEL software="ThermoRawFileParser" | |
| LABEL software.version="1.0.0" | |
| LABEL about.summary="A software to convert Thermo RAW files to mgf and mzML" | |
| LABEL about.home="https://github.com/compomics/ThermoRawFileParser" |
ypriverol
/ another yaml example
Created
October 11, 2017 21:16
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| diff --git a/recipes/amos/meta.yaml b/recipes/amos/meta.yaml | |
| index 5e75a5e..65b4a20 100644 | |
| --- a/recipes/amos/meta.yaml | |
| +++ b/recipes/amos/meta.yaml | |
| @@ -1,10 +1,11 @@ | |
| +--- | |
| package: | |
| name: amos | |
| - version: "3.1.0" | |
| + version: 3.1.0 |
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| diff --git a/recipes/adam/meta.yaml b/recipes/adam/meta.yaml | |
| index 378fae3..85b9a20 100644 | |
| --- a/recipes/adam/meta.yaml | |
| +++ b/recipes/adam/meta.yaml | |
| @@ -1,3 +1,4 @@ | |
| +--- | |
| {% set version="0.22.0" %} | |
| about: | |
| @@ -11,23 +12,25 @@ package: |