gistfile1.txt

In file included from ./sources/shared/system_support/thread_manager.h:163,
                 from ./sources/shared/system_support/thread_manager_active.h:24,
                 from ./././sources/shared/decision_function/decision_function_manager.h:28,
                 from ./././scenario_config.cpp:26,
                 from ././scenario_config.h:80,
                 from ./liquidSVM.cpp:22,
                 from liquidSVM.h:56,
                 from liquidSVM_R.cpp:57:
./sources/shared/system_support/thread_manager.cpp:393:19: warning: cudaError_t cudaThreadExit() is deprecated [-Wdeprecated-declarations]
    cudaThreadExit();
                   ^
In file included from /opt/ebsofts/Compiler/GCC/8.3.0/CUDA/10.1.243/include/channel_descriptor.h:61,
                 from /opt/ebsofts/Compiler/GCC/8.3.0/CUDA/10.1.243/include/cuda_runtime.h:95,
                 from ./sources/shared/system_support/cuda_basics.h:25,
                 from ./sources/shared/kernel/kernel_computation.h:28,
                 from ./sources/shared/basic_types/dataset.ins.cpp:23,
                 from sources/shared/basic_types/dataset.h:136,
                 from liquidSVM.h:22,
                 from liquidSVM_R.cpp:57:
/opt/ebsofts/Compiler/GCC/8.3.0/CUDA/10.1.243/include/cuda_runtime_api.h:931:57: note: declared here
 extern __CUDA_DEPRECATED __host__ cudaError_t CUDARTAPI cudaThreadExit(void);
                                                         ^~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/lib -L/opt/ebsofts/pocl/1.4-gcccuda-2019b/lib64 -L/opt/ebsofts/ImageMagick/7.0.9-5-GCCcore-8.3.0/lib -L/opt/ebsofts/GSL/2.6-GCC-8.3.0/lib -L/opt/ebsofts/UDUNITS/2.2.26-GCCcore-8.3.0/lib -L/opt/ebsofts/MPI/GCC-CUDA/8.3.0-10.1.243/OpenMPI/3.1.4/HDF5/1.10.5/lib -L/opt/ebsofts/Compiler/GCCcore/8.3.0/ICU/64.2/lib -L/opt/ebsofts/libsndfile/1.0.28-GCCcore-8.3.0/lib -L/opt/ebsofts/FFTW/3.3.8-gompic-2019b/lib -L/opt/ebsofts/NLopt/2.6.1-GCCcore-8.3.0/lib64 -L/opt/ebsofts/GMP/6.1.2-GCCcore-8.3.0/lib -L/opt/ebsofts/libxml2/2.9.9-GCCcore-8.3.0/lib -L/opt/ebsofts/cURL/7.66.0-GCCcore-8.3.0/lib -L/opt/ebsofts/Tk/8.6.9-GCCcore-8.3.0/lib -L/opt/ebsofts/Core/Java/11.0.2/lib -L/opt/ebsofts/LibTIFF/4.0.10-GCCcore-8.3.0/lib -L/opt/ebsofts/libjpeg-turbo/2.0.3-GCCcore-8.3.0/lib64 -L/opt/ebsofts/libpng/1.6.37-GCCcore-8.3.0/lib -L/opt/ebsofts/PCRE/8.43-GCCcore-8.3.0/lib -L/opt/ebsofts/SQLite/3.29.0-GCCcore-8.3.0/lib -L/opt/ebsofts/Compiler/GCCcore/8.3.0/zlib/1.2.11/lib -L/opt/ebsofts/Compiler/GCCcore/8.3.0/XZ/5.2.4/lib -L/opt/ebsofts/bzip2/1.0.8-GCCcore-8.3.0/lib -L/opt/ebsofts/ncurses/6.1-GCCcore-8.3.0/lib -L/opt/ebsofts/libreadline/8.0-GCCcore-8.3.0/lib -L/opt/ebsofts/cairo/1.16.0-GCCcore-8.3.0/lib -L/opt/ebsofts/libGLU/9.0.1-GCCcore-8.3.0/lib -L/opt/ebsofts/Mesa/19.1.7-GCCcore-8.3.0/lib -L/opt/ebsofts/X11/20190717-GCCcore-8.3.0/lib -L/opt/ebsofts/ScaLAPACK/2.0.2-gompic-2019b/lib -L/opt/ebsofts/OpenBLAS/0.3.7-GCC-8.3.0/lib -L/opt/ebsofts/Core/GCCcore/8.3.0/lib64 -L/opt/ebsofts/Core/GCCcore/8.3.0/lib -L/opt/ebsofts/Compiler/GCC/8.3.0/CUDA/10.1.243/lib64 -o liquidSVM.so cuda_objects/validation_error_computation.o cuda_objects/validation_error_hinge_init.o cuda_objects/decision_function_evaluation.o cuda_objects/kernel_computation.o cuda_objects/cuda_simple_vector_operations.o liquidSVM_R.o -L/opt/ebsofts/Compiler/GCC/8.3.0/CUDA/10.1.243/lib64 -static-libstdc++ -lcuda -lcudart -L/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/lib -lR
installing to /opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/library/00LOCK-liquidSVM/00new/liquidSVM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for liquidSVM in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/library/00LOCK-liquidSVM/00new/liquidSVM/libs/liquidSVM.so':
  libcuda.so.1: cannot open shared object file: No such file or directory
Error: loading failed
Execution halted
ERROR: loading failed
 (at easybuild/tools/run.py:533 in parse_cmd_output)
== 2021-01-15 14:32:26,156 filetools.py:1684 INFO Removing lock /opt/ebsofts/.locks/_opt_ebsofts_R_3.6.2-fosscuda-2019b.lock...
== 2021-01-15 14:32:26,160 filetools.py:330 INFO Path /opt/ebsofts/.locks/_opt_ebsofts_R_3.6.2-fosscuda-2019b.lock successfully removed.
== 2021-01-15 14:32:26,160 filetools.py:1688 INFO Lock removed: /opt/ebsofts/.locks/_opt_ebsofts_R_3.6.2-fosscuda-2019b.lock
== 2021-01-15 14:32:26,160 easyblock.py:3340 WARNING build failed (first 300 chars): cmd "LIQUIDSVM_TARGET="empty" R CMD INSTALL /dev/shm/ebbuild/R/3.6.2/fosscuda-2019b/liquidSVM/liquidSVM   --library=/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/library --no-clean-on-error " exited with exit code 1 and output:
* installing *source* package liquidSVM ...
** package liquidSVM successfu
== 2021-01-15 14:32:26,161 easyblock.py:295 INFO Closing log for application name R version 3.6.2