Rmpi error at test

gistfile1.txt

R CMD INSTALL /home/sagon/.local/easybuild/sources/r/R/extensions/Rmpi_0.6-6.tar.gz  --configure-args="--with-Rmpi-include=/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/include --with-Rmpi-libpath=/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/lib --with-mpi=/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2 --with-Rmpi-type=OPENMPI"  --library=/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.3.1/lib64/R/library --no-clean-on-error



* installing *source* package ‘Rmpi’ ...
** package ‘Rmpi’ successfully unpacked and MD5 sums checked
checking for openpty in -lutil... no
checking for main in -lpthread... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.2.3/lib64/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/include  -DMPI2 -DOPENMPI -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenBLAS/0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/FFTW/3.3.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libreadline/6.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ncurses/6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libpng/1.6.21/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libjpeg-turbo/1.4.2/include -I/opt/ebsofts/Core/Java/1.8.0_72/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tcl/8.6.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tk/8.6.4-no-X11/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/cURL/7.47.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libxml2/2.9.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/GDAL/2.0.2/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/PROJ/4.9.2/include    -fpic  -O2 -march=native  -c Rmpi.c -o Rmpi.o
gcc -std=gnu99 -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.2.3/lib64/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/include  -DMPI2 -DOPENMPI -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenBLAS/0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/FFTW/3.3.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libreadline/6.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ncurses/6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libpng/1.6.21/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libjpeg-turbo/1.4.2/include -I/opt/ebsofts/Core/Java/1.8.0_72/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tcl/8.6.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tk/8.6.4-no-X11/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/cURL/7.47.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libxml2/2.9.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/GDAL/2.0.2/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/PROJ/4.9.2/include    -fpic  -O2 -march=native  -c conversion.c -o conversion.o
gcc -std=gnu99 -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.2.3/lib64/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/include  -DMPI2 -DOPENMPI -I/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenBLAS/0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/FFTW/3.3.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libreadline/6.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ncurses/6.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libpng/1.6.21/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libjpeg-turbo/1.4.2/include -I/opt/ebsofts/Core/Java/1.8.0_72/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tcl/8.6.4/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tk/8.6.4-no-X11/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/cURL/7.47.0/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libxml2/2.9.3/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/GDAL/2.0.2/include -I/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/PROJ/4.9.2/include    -fpic  -O2 -march=native  -c internal.c -o internal.o
gcc -std=gnu99 -shared -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.2.3/lib64/R/lib -L/opt/ebsofts/Core/GCCcore/4.9.3/lib64 -L/opt/ebsofts/Core/GCCcore/4.9.3/lib -L/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenBLAS/0.2.15-LAPACK-3.6.0/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.15-LAPACK-3.6.0/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/FFTW/3.3.4/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libreadline/6.3/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/ncurses/6.0/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libpng/1.6.21/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libjpeg-turbo/1.4.2/lib -L/opt/ebsofts/Core/Java/1.8.0_72/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tcl/8.6.4/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/Tk/8.6.4-no-X11/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/cURL/7.47.0/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/libxml2/2.9.3/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/GDAL/2.0.2/lib -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/PROJ/4.9.2/lib -o Rmpi.so Rmpi.o conversion.o internal.o -L/opt/ebsofts/Compiler/GCC/4.9.3-2.25/OpenMPI/1.10.2/lib -lmpi -L/opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.2.3/lib64/R/lib -lR
installing to /opt/ebsofts/MPI/GCC/4.9.3-2.25/OpenMPI/1.10.2/R/3.3.1/lib64/R/library/Rmpi/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

  PMI2_Job_GetId failed failed
  --> Returned value (null) (14) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

  orte_ess_init failed
  --> Returned value (null) (14) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems.  This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):

  ompi_mpi_init: ompi_rte_init failed
  --> Returned "(null)" (14) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
***    and potentially your MPI job)
[master.cluster:165227] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
ERROR: loading failed