Last active
September 28, 2017 01:44
-
-
Save yufree/e251b9c5a955752ae5a4cc119a9c4937 to your computer and use it in GitHub Desktop.
Influence of p-value cutoff change
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
library(tidypvals) | |
library(dplyr) | |
library(ggplot2) | |
aj1 = anti_join(head2015,chavalarias2016) | |
aj2 = anti_join(chavalarias2016,head2015) | |
sj1 = semi_join(head2015,chavalarias2016) | |
allp = rbind(aj1,aj2,sj1) | |
allp = rbind(allp,brodeur2016) | |
allp0 = allp %>% | |
filter(!is.na(field)) %>% | |
group_by(field) %>% | |
mutate(p0.05 = (pvalue<0.05)) %>% | |
mutate(p0.005 = (pvalue<0.005)) %>% | |
summarise(avg1 = mean(p0.05),avg2 = mean(p0.005)) %>% | |
mutate(wrong = avg1-avg2) | |
allp0 %>% | |
ggplot(aes(field, wrong)) + | |
geom_col(show.legend = FALSE) + | |
ylab("percentage of not significant paper if p-value cutoff is 0.005") + | |
coord_flip() | |
allp0 %>% | |
ggplot(aes(field, avg1)) + | |
geom_col(show.legend = FALSE) + | |
ylab("percentage of significant paper if p-value cutoff is 0.05") + | |
coord_flip() | |
allp0 %>% | |
ggplot(aes(field, avg2)) + | |
geom_col(show.legend = FALSE) + | |
ylab("percentage of significant paper if p-value cutoff is 0.005") + | |
coord_flip() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment