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@yuifu
Created September 12, 2020 01:44
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Command

cwltool --debug "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl" "job.yml"

job.yml

run_ids:  # array of type "string"
  - SRR12594136
repo: "ncbi"  # default value of type "string". (optional)
nthreads: 4  # default value of type "int". (optional)

備考

  • SRR12594136 でエラー
  • SRR5516338SRR5516315 では正常終了し、空でないFASTQファイルができたことを確認
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