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yuifu/ushuffle_example.sh

Created June 29, 2021 03:39
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ushuffle example (executable)
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ushuffle_example.sh
# Note: '2' indicates that the shuffled sequence preserves 2-mer frequency
./main.exe -s KTTTTCTTTTTTTTTTA -n 1 -k 2
# Repeat shuffling for 10 times
./main.exe -s KTTTTCTTTTTTTTTTA -n 10 -k 2
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yuifu commented Jun 29, 2021 

(base) MacBook-Pro-10:ushuffle haruka$ ./main.exe -s KTTTTCTTTTTTTTTTA -n 1 -k 2
KTTTTTTTTTTTTCTTA
(base) MacBook-Pro-10:ushuffle haruka$
(base) MacBook-Pro-10:ushuffle haruka$ # Repeat shuffling for 10 times
(base) MacBook-Pro-10:ushuffle haruka$ ./main.exe -s KTTTTCTTTTTTTTTTA -n 10 -k 2
KTTTCTTTTTTTTTTTA
KTTTTTTTTTTCTTTTA
KTTTTTCTTTTTTTTTA
KTCTTTTTTTTTTTTTA
KTTTTTTCTTTTTTTTA
KTTTTTTTTTCTTTTTA
KTTTTTCTTTTTTTTTA
KTCTTTTTTTTTTTTTA
KTTCTTTTTTTTTTTTA
KTTTTTTTTTTTTCTTA

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