error, repo=ncbi

/home/harukao/anaconda3/bin/cwltool 1.0.20190228155703
https://schema.org/docs/!DOCTYPE html does not look like a valid URI, trying to serialize this will break.
html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" does not look like a valid URI, trying to serialize this will break.
Could not load extension schema https://schema.org/docs/schema_org_rdfa.html: RDFa parsing Error! mismatched tag: line 21, column 2
Workflow checker warning:
https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl:12:5: Source 'nthreads'
                                                                                                                         of type ["null",
                                                                                                                         "int"] may be
                                                                                                                         incompatible
https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl:39:7:   with sink
                                                                                                                           'nthreads' of type
                                                                                                                           "int"
https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl:17:5: Source 'repo' of
                                                                                                                         type ["null",
                                                                                                                         "string"] may be
                                                                                                                         incompatible
https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl:31:7:   with sink 'repo'
                                                                                                                           of type "string"
[workflow ] initialized from https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl
[workflow ] start
[workflow ] {
    "run_ids": [
        "SRR12594136"
    ],
    "repo": "ncbi",
    "nthreads": 4
}
[workflow ] job step https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#pfastq_dump not ready
[workflow ] starting step download_sra
[job step download_sra] job input {
    "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#download_sra/repo": "ncbi",
    "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#download_sra/run_ids": [
        "SRR12594136"
    ]
}
[job step download_sra] evaluated job input to {
    "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#download_sra/repo": "ncbi",
    "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#download_sra/run_ids": [
        "SRR12594136"
    ]
}
[step download_sra] start
[job download_sra] initializing from https://github.com/pitagora-network/pitagora-cwl/raw/master/tools/download-sra/download-sra.cwl as part of step download_sra
[job download_sra] {
    "repo": "ncbi",
    "run_ids": [
        "SRR12594136"
    ]
}
[job download_sra] path mappings is {}
[job download_sra] command line bindings is [
    {
        "position": [
            -1000000,
            0
        ],
        "datum": "download-sra"
    },
    {
        "position": [
            1,
            "repo"
        ],
        "prefix": "-r",
        "datum": "ncbi"
    },
    {
        "position": [
            2,
            "run_ids"
        ],
        "datum": [
            "SRR12594136"
        ]
    },
    {
        "position": [
            2,
            "run_ids",
            0,
            0,
            "run_ids",
            "run_ids"
        ],
        "datum": "SRR12594136"
    }
]
[job download_sra] initial work dir {}
[job download_sra] /tmp/s4v0blwm$ docker \
    run \
    -i \
    --volume=/tmp/s4v0blwm:/lysYOA:rw \
    --volume=/tmp/l1q_5o43:/tmp:rw \
    --workdir=/lysYOA \
    --read-only=true \
    --user=10011:10000 \
    --rm \
    --env=TMPDIR=/tmp \
    --env=HOME=/lysYOA \
    --cidfile=/tmp/921j1zp4/20200912103422-998896.cid \
    quay.io/inutano/download-sra:0.2.1 \
    download-sra \
    -r \
    ncbi \
    SRR12594136
--2020-09-12 01:34:23--  ftp://ftp.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR125/SRR12594136/SRR12594136.sra
           => 'SRR12594136.sra'
Resolving ftp.ncbi.nlm.nih.gov... 130.14.250.10, 2607:f220:41e:250::10, 2607:f220:41e:250::7, ...
Connecting to ftp.ncbi.nlm.nih.gov|130.14.250.10|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /sra/sra-instant/reads/ByRun/sra/SRR/SRR125/SRR12594136 ... 
No such directory 'sra/sra-instant/reads/ByRun/sra/SRR/SRR125/SRR12594136'.

[job download_sra] Max memory used: 0MiB
[job download_sra] completed permanentFail
[job download_sra] {
    "sraFiles": [
        {
            "location": "file:///tmp/s4v0blwm/SRR12594136.sra",
            "basename": "SRR12594136.sra",
            "nameroot": "SRR12594136",
            "nameext": ".sra",
            "class": "File",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "size": 0,
            "http://commonwl.org/cwltool#generation": 0
        }
    ]
}
[step download_sra] produced output {
    "https://raw.githubusercontent.com/pitagora-network/pitagora-cwl/master/workflows/download-fastq/download-fastq.cwl#download_sra/sraFiles": [
        {
            "location": "file:///tmp/s4v0blwm/SRR12594136.sra",
            "basename": "SRR12594136.sra",
            "nameroot": "SRR12594136",
            "nameext": ".sra",
            "class": "File",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "size": 0,
            "http://commonwl.org/cwltool#generation": 0
        }
    ]
}
[step download_sra] completed permanentFail
[job download_sra] Removing input staging directory /tmp/7l3bvw2n
[job download_sra] Removing temporary directory /tmp/l1q_5o43
[workflow ] completed permanentFail
[workflow ] {
    "fastq_files": null
}
{
    "fastq_files": null
}
Final process status is permanentFail