Bash script to build HiPLARM for R.

hiplar.sh

#!/bin/bash

mkdir LALibs
export BLDDIR=/home/felix/src/LALibs
cd $BLDDIR
mkdir lib
mkdir include
LIBDIR=$BLDDIR/lib
INCDIR=$BLDDIR/include
NUM_PHYS_CPU=`cat /proc/cpuinfo | grep 'physical id' | sort | uniq | wc -l`
NUM_CORES=`cat /proc/cpuinfo | grep 'cpu cores' | uniq | sed 's/[a-z]//g' | sed 's/://g'`
let TOTAL_CORES=$[NUM_PHYS_CPU * NUM_CORES]

## start install hwloc
wget http://www.open-mpi.org/software/hwloc/v1.9/downloads/hwloc-1.9.tar.gz
tar -xf hwloc-1.9.tar.gz
cd hwloc-1.9
./configure --prefix="$BLDDIR"
make -j $NUM_CORES
make install
export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$LIBDIR/pkgconfig
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$LIBDIR
cd $BLDDIR

## start install PLASMA
export OMP_NUM_THREADS=1
export MKL_NUM_THREADS=1
wget http://icl.cs.utk.edu/projectsfiles/plasma/pubs/plasma-installer_2.8.0.tar.gz
tar -xf plasma-installer_2.8.0.tar.gz
cd plasma-installer_2.8.0
./setup.py --prefix="$BLDDIR" --cc=gcc --fc=gfortran      \
           --blaslib="-Wl,--no-as-needed -L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -ldl" \
           --cflags="-m64 -I${MKLROOT}/include -O3 -fPIC -I$BLDDIR/include" \
           --fflags="-O3 -fPIC" --noopt="-fPIC" \
           --ldflags_c="-I$BLDDIR/include"\
           --notesting --downlapc

# compile shared libraries
cd $LIBDIR
gcc -shared -o libplasma.so -Wl,-whole-archive libplasma.a -Wl,-no-whole-archive -L. -lhwloc -llapacke
gcc -shared -o libcoreblas.so -Wl,-whole-archive libcoreblas.a -Wl,-no-whole-archive -L. -llapacke
gcc -shared -o libquark.so -Wl,-whole-archive libquark.a -Wl,-no-whole-archive
gcc -shared -o libcoreblasqw.so -Wl,-whole-archive libcoreblasqw.a -Wl,-no-whole-archive -L. -llapacke
export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$LIBDIR/pkgconfig
export PLASMA_NUM_THREADS=$TOTAL_CORES
export R_PLASMA_NUM_THREADS=$TOTAL_CORES
cd $BLDDIR

## start install MGMGA
export CUDADIR=/usr/local/cuda
export CUDALIB=$CUDADIR/lib64
wget http://icl.cs.utk.edu/projectsfiles/magma/downloads/magma-2.1.0.tar.gz
tar -xf magma-2.1.0.tar.gz
cd magma-2.1.0

echo "#include<cuda.h>
#include<cuda_runtime_api.h>
#include<stdio.h>

int main() {

  int deviceCount = 0;
  cudaError_t error_id = cudaGetDeviceCount(&deviceCount);

  int dev, driverVersion = 0, runtimeVersion = 0;
  struct cudaDeviceProp deviceProp;
  int prev = 0;

  for (dev = 0; dev < deviceCount; dev++) {
    cudaGetDeviceProperties(&deviceProp, dev);
    if(deviceProp.major > prev)
      prev = deviceProp.major;
    }
    if(prev >= 2 && prev < 3)
      printf(\"GPU_TARGET = Fermi\");
    else if(prev >= 3)
      printf(\"GPU_TARGET = Kepler\");
    else
      printf(\"GPU_TARGET = Tesla\");

      return 0;
}
" > getDevice.c
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUDALIB
gcc getDevice.c -I$CUDADIR/include -o getDevice -L$CUDALIB -lcudart
./getDevice > make.inc

cat make.inc.mkl-gcc >> make.inc

make -j $NUM_CORES shared

cd lib
cp *.so $LIBDIR
cd ../
cp include/*.h $BLDDIR/include/
cd $BLDDIR

## install HiPLARM
wget https://cran.r-project.org/src/contrib/HiPLARM_0.1.tar.gz
R CMD INSTALL --configure-args="--with-lapack=-L$MKLROOT/lib/intel64 --with-plasma-lib=$BLDDIR --with-cuda-home=/usr/local/cuda --with-magma-lib=$BLDDIR" HiPLARM_0.1.tar.gz