yymao

#/usr/bin/env python

import sys
import pyarrow as pa
import pyarrow.parquet as pq
from helpers.io_utils import hlist2pandas
import tqdm

def main(input_filename):
    reader = hlist2pandas(input_filename, sanitize_column_names=True, chunksize=1000000)

yymao

# environment.yml
# Author: Yao-Yuan Mao @yymao
# Usage: 
#   wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh
#   sh Miniforge3-Linux-x86_64.sh
#   wget https://gist.githubusercontent.com/yymao/a1fcd607925996d8786a1d963fb01deb/raw/environment.yml
#   mamba env create -f environment.yml

name: mypy
channels:

yymao

#!/usr/bin/env python

from __future__ import print_function
import os
import sys
import subprocess
import json
import re

def abort(message, errorstatus=1):

yymao

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% hyperlink-year-only-natbib-patch.tex
% Gist URL: https://gist.github.com/yymao/eefa0bc6d881675b7e3c4bb7bee2b843
% Raw URL: https://gist.githubusercontent.com/yymao/eefa0bc6d881675b7e3c4bb7bee2b843/raw/hyperlink-year-only-natbib-patch.tex
% Implementation taken from https://tex.stackexchange.com/a/27311
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\RequirePackage{hyperref}
\RequirePackage{natbib}
\RequirePackage{etoolbox}

yymao

class Name(object):
    """
    For better name comparison
    """
    def __init__(self, name, exact=False):
        self.name = name
        if ',' in name:
            name = '{0[1]} {0[0]}'.format(name.split(','))
        self.names = tuple((n.lower() for n in name.replace('-', ' ').replace('.', '. ').split() if n != '.'))
        assert self.names, '*name* must not be empty'

yymao

%% 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% AASTeX61.cls                                  %%
%% October 5, 2016                               %%
%% December 28, 2016 (bug fix on .bib file)      %%
%% Copyright 2016 American Astronomical Society  %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\def\currversion{6.1}

yymao

#!/usr/bin/env python
import os
from shutil import copyfileobj
try:
    from urllib.request import urlopen
except ImportError:
    from urllib2 import urlopen

SLAC_KNOWN_HOSTS_URL = 'ftp://ftp.slac.stanford.edu/admin/known_hosts'
KNOWN_HOSTS_PATH = os.path.join(os.getenv('HOME'), '.ssh', 'known_hosts')

yymao

#!/usr/bin/env python
from __future__ import print_function
import re
import argparse


def _find_ending_brace(s, open_brace=1):
    escaping = False
    output = ''
    remain = ''

yymao

#!/usr/bin/env python

from __future__ import print_function
import subprocess
import argparse
from contextlib import closing
import socket
import random

__author__ = 'Yao-Yuan Mao'

yymao

#!/usr/bin/env python
import os
import time
from argparse import ArgumentParser

#user settings
_perl_exe = 'perl'
_default_ctrees_dir = os.getenv('HOME') + '/software/consistent-trees'