Install SciDB

scidb-install.txt

scp yzhang@linux04.cs.uh.edu:~/packages/scidb-15.7.0.9267.tgz ./
tar -xzf scidb-15.7.0.9267.tgz
mv scidb-15.7.0.9267/ scidbtrunk

sudo apt-get update
sudo apt-get -y install subversion expect openssh-server openssh-client

# The following environment variables should go into ~/.bashrc
export SCIDB_VER="15.7"
export SCIDB_SOURCE_PATH="/home/scidb/scidbtrunk"
export SCIDB_BUILD_PATH="$SCIDB_SOURCE_PATH/stage/build"
export SCIDB_INSTALL_PATH="/opt/scidb/$SCIDB_VER"
export SCIDB_BUILD_TYPE="RelWithDebInfo"
export PATH="$SCIDB_INSTALL_PATH/bin:.:$PATH"
export LD_LIBRARY_PATH="$SCIDB_INSTALL_PATH/lib"

cd /home/scidb/scidbtrunk
deployment/deploy.sh prepare_toolchain localhost
deployment/deploy.sh prepare_coordinator localhost

sudo usermod -G scidb -a postgres
chmod g+rx /home/scidb/

# ./run.py setup
# ./deployment/deploy.sh build_fast ~/scidbtrunk/packages

scp -r yzhang@linux04.cs.uh.edu:~/www/packages ./
./deployment/deploy.sh scidb_install ~/scidbtrunk/packages localhost

# Configure PostgreSQL access:
# sudo vim /etc/postgresql/9.3/main/pg_hba.conf
# Replace line 92 with:
# host    all             all             0.0.0.0/0            md5
#
# sudo vim /etc/postgresql/9.3/main/postgresql.conf
# At line 59, put listen_addresses = '*'
#
# I also changed max_connections = 200
#
# Restart the PostgreSQL server:
# sudo service postgresql restart
---------------------------------------------------------------------
sudo chown -R scidb:scidb /opt/scidb

Add SciDB-R package:
install.packages('devtools')
devtools::install_github("Paradigm4/SciDBR")

Install shim:
wget http://paradigm4.github.io/shim/ubuntu_14.04_shim_15.7_amd64.deb
sudo apt-get install -y gdebi
sudo gdebi ubuntu_14.04_shim_15.7_amd64.deb
sudo service shimsvc start

Add rs, scidbtime to /usr/local/bin
Need to configure scidb to be a passwordless sudo user in /etc/sudoers

deployment/deploy.sh scidb_prepare scidb "" localdb localdb localdb /home/scidb/scidbdata/localdb 2 default 1 127.0.0.1
deployment/deploy.sh scidb_prepare ubuntu "" localdb localdb localdb /home/ubuntu/scidbdata/localdb 1 default 1 127.0.0.1