Skip to content

Instantly share code, notes, and snippets.

@zao
Created June 28, 2024 14:50
Show Gist options
  • Save zao/65292f56c353c569058b357f02cd4721 to your computer and use it in GitHub Desktop.
Save zao/65292f56c353c569058b357f02cd4721 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /eb/tmp/eb-4pe4i5zk/files_pr20568/p/PETSc/PETSc-3.21.0-foss-2023b.eb (PR(s) #20568)
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SCOTCH/7.0.4-gompi-2023b for SCOTCH was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/MUMPS/5.6.1-foss-2023b-metis for MUMPS was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0 for SuiteSparse was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/Hypre/2.31.0-foss-2023b for Hypre was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/ParMETIS/4.0.3-gompi-2023b for ParMETIS was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuperLU_DIST/8.2.1-foss-2023b for SuperLU_DIST was found in environment
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/mpi4py/3.1.5-gompi-2023b for mpi4py was found in environment
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/include was not found
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/lib64 was not found
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/lib was not found
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/SciPy-bundle/2023.11-gfbf-2023b/include was not found
== 2024-06-28 16:48:37,271 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/mpi4py/3.1.5-gompi-2023b/include was not found
== 2024-06-28 16:48:37,272 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_SHARED_LIBS to libflexiblas.so,libgfortran.so
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libflexiblas.a,libgfortran.a
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC to mpicc
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable CC set to mpicc (previously undefined)
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARCC set to mpicc (previously undefined)
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC_SEQ to gcc
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable CC_SEQ set to gcc (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CPPFLAGS set to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX to mpicxx
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXX set to mpicxx (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXX set to mpicxx (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX_SEQ to g++
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXX_SEQ set to g++ (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77 to mpifort
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable F77 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARF77 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77_SEQ to gfortran
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F77_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90 to mpifort
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90_SEQ to gfortran
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC to mpifort
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FC set to mpifort (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFC set to mpifort (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC_SEQ to gfortran
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FC_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LDFLAGS set to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lflexiblas -lgfortran
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lflexiblas -lgfortran -lpthread
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3_mpi -lfftw3
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3_omp -lfftw3 -lpthread
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lflexiblas -lgfortran
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lflexiblas -lgfortran -lpthread
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lflexiblas -lgfortran -lpthread
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lflexiblas -lgfortran
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lflexiblas -lgfortran
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lflexiblas -lgfortran -lpthread
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPI_INC_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include (previously undefined)
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64 (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64 (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined)
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2024-06-28 16:48:37,285 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined)
== 2024-06-28 16:48:37,285 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined)
== 2024-06-28 16:48:37,285 toolchain.py:961 INFO Putting RPATH wrappers in place...
== 2024-06-28 16:48:37,286 toolchain.py:989 DEBUG No general RPATH filter specified, falling back to default: ['/lib.*', '/usr.*']
== 2024-06-28 16:48:37,286 toolchain.py:991 DEBUG Combined RPATH filter: '/lib.*,/usr.*,/eb/tmp/eb-4pe4i5zk.*,/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b.*,.*/lib(64)?/stubs/?.*,.*/stubs/lib(64)?/?.*'
== 2024-06-28 16:48:37,286 toolchain.py:994 DEBUG Combined RPATH include paths: '/eb/software/PETSc/3.21.0-foss-2023b/lib,/eb/software/PETSc/3.21.0-foss-2023b/lib64,$ORIGIN,$ORIGIN/../lib,$ORIGIN/../lib64'
== 2024-06-28 16:48:37,286 filetools.py:526 INFO Command gcc found at /eb/software/GCCcore/13.2.0/bin/gcc
== 2024-06-28 16:48:37,286 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,287 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc
== 2024-06-28 16:48:37,287 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc: 0o100644
== 2024-06-28 16:48:37,287 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc: 0o100
== 2024-06-28 16:48:37,287 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc to 0o100744
== 2024-06-28 16:48:37,287 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,287 filetools.py:526 INFO Command gcc found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc
== 2024-06-28 16:48:37,287 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/gcc: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_gcc.log)
== 2024-06-28 16:48:37,287 filetools.py:526 INFO Command g++ found at /eb/software/GCCcore/13.2.0/bin/g++
== 2024-06-28 16:48:37,287 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,287 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++
== 2024-06-28 16:48:37,287 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++: 0o100644
== 2024-06-28 16:48:37,288 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++: 0o100
== 2024-06-28 16:48:37,288 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ to 0o100744
== 2024-06-28 16:48:37,288 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,288 filetools.py:526 INFO Command g++ found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++
== 2024-06-28 16:48:37,288 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/g++: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_g++.log)
== 2024-06-28 16:48:37,288 filetools.py:526 INFO Command gfortran found at /eb/software/GCCcore/13.2.0/bin/gfortran
== 2024-06-28 16:48:37,288 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,288 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran
== 2024-06-28 16:48:37,288 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran: 0o100644
== 2024-06-28 16:48:37,288 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran: 0o100
== 2024-06-28 16:48:37,288 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran to 0o100744
== 2024-06-28 16:48:37,288 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command gfortran found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran
== 2024-06-28 16:48:37,289 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/gfortran: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_gfortran.log)
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command ld found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld
== 2024-06-28 16:48:37,289 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,289 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld
== 2024-06-28 16:48:37,289 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld: 0o100644
== 2024-06-28 16:48:37,289 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld: 0o100
== 2024-06-28 16:48:37,289 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld to 0o100744
== 2024-06-28 16:48:37,289 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command ld found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld
== 2024-06-28 16:48:37,289 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.log)
== 2024-06-28 16:48:37,290 filetools.py:526 INFO Command ld.gold found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.gold
== 2024-06-28 16:48:37,290 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,290 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold
== 2024-06-28 16:48:37,290 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold: 0o100644
== 2024-06-28 16:48:37,290 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold: 0o100
== 2024-06-28 16:48:37,290 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold to 0o100744
== 2024-06-28 16:48:37,290 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,290 filetools.py:526 INFO Command ld.gold found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold
== 2024-06-28 16:48:37,290 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.gold: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.gold.log)
== 2024-06-28 16:48:37,291 filetools.py:526 INFO Command ld.bfd found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.bfd
== 2024-06-28 16:48:37,291 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper (parents: True, set_gid: False, sticky: False)
== 2024-06-28 16:48:37,291 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd
== 2024-06-28 16:48:37,291 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd: 0o100644
== 2024-06-28 16:48:37,291 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd: 0o100
== 2024-06-28 16:48:37,291 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd to 0o100744
== 2024-06-28 16:48:37,291 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin')
== 2024-06-28 16:48:37,291 filetools.py:526 INFO Command ld.bfd found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd
== 2024-06-28 16:48:37,291 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.bfd: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.bfd.log)
== 2024-06-28 16:48:37,291 toolchain.py:442 DEBUG get_software_version software version 4.1.6 for OpenMPI was found in environment
== 2024-06-28 16:48:37,291 easyblock.py:2139 INFO Using /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/ as start dir
== 2024-06-28 16:48:37,291 easyblock.py:2142 DEBUG Changed to real build directory /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/ (start_dir)
== 2024-06-28 16:48:37,291 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}]
== 2024-06-28 16:48:37,292 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}]
== 2024-06-28 16:48:37,292 petsc.py:100 INFO Python included as runtime dependency, so enabling Python support
== 2024-06-28 16:48:37,292 build_log.py:267 INFO ... (took 3 secs)
== 2024-06-28 16:48:37,293 easyblock.py:3941 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False)
== 2024-06-28 16:48:37,293 build_log.py:267 INFO configuring...
== 2024-06-28 16:48:37,294 easyblock.py:3950 INFO Starting configure step
== 2024-06-28 16:48:37,294 easyconfig.py:1702 INFO Generating template values...
== 2024-06-28 16:48:37,294 templates.py:201 DEBUG config: PETSc EasyConfig @ /eb/tmp/eb-4pe4i5zk/files_pr20568/p/PETSc/PETSc-3.21.0-foss-2023b.eb
== 2024-06-28 16:48:37,294 templates.py:231 DEBUG version found in easyconfig is 3.21.0
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: github_account, config: %(namelower)s
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: name, config: PETSc
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: parallel, config: 12
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: version, config: 3.21.0
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: versionsuffix, config:
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: versionprefix, config:
== 2024-06-28 16:48:37,295 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2024-06-28 16:48:37,295 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2024-06-28 16:48:37,295 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='petsc', builddir='/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b', github_account='petsc', installdir='/eb/software/PETSc/3.21.0-foss-2023b', module_name='PETSc/3.21.0', mpi_cmd_prefix='mpirun -n 1', name='PETSc', nameletter='P', nameletterlower='p', namelower='petsc', parallel='12', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.21.0', version_major='3', version_major_minor='3.21', version_minor='21', versionprefix='', versionsuffix=''
== 2024-06-28 16:48:37,295 easyblock.py:3958 INFO Running method configure_step part of step configure
== 2024-06-28 16:48:37,295 run.py:180 DEBUG run_cmd: Output of "python -c 'import numpy'" will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-v4ezxfe1.log
== 2024-06-28 16:48:37,296 run.py:221 DEBUG run_cmd: running cmd python -c 'import numpy' (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0)
== 2024-06-28 16:48:37,297 run.py:247 INFO running cmd: python -c 'import numpy'
== 2024-06-28 16:48:37,386 run.py:687 INFO cmd "python -c 'import numpy'" exited with exit code 0 and output:
== 2024-06-28 16:48:37,387 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2024-06-28 16:48:37,387 run.py:180 DEBUG run_cmd: Output of "python -c 'import mpi4py'" will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-8tyz_tfz.log
== 2024-06-28 16:48:37,388 run.py:221 DEBUG run_cmd: running cmd python -c 'import mpi4py' (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0)
== 2024-06-28 16:48:37,388 run.py:247 INFO running cmd: python -c 'import mpi4py'
== 2024-06-28 16:48:37,407 run.py:687 INFO cmd "python -c 'import mpi4py'" exited with exit code 0 and output:
== 2024-06-28 16:48:37,407 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2024-06-28 16:48:37,407 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/Python/3.11.5', 'short_mod_name': 'Python/3.11.5', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/SciPy-bundle/2023.11', 'short_mod_name': 'SciPy-bundle/2023.11', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/Boost/1.83.0', 'short_mod_name': 'Boost/1.83.0', 'name': 'Boost', 'version': '1.83.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SCOTCH/7.0.4', 'short_mod_name': 'SCOTCH/7.0.4', 'name': 'SCOTCH', 'version': '7.0.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuiteSparse/7.7.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/7.7.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '7.7.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/Hypre/2.31.0', 'short_mod_name': 'Hypre/2.31.0', 'name': 'Hypre', 'version': '2.31.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuperLU_DIST/8.2.1', 'short_mod_name': 'SuperLU_DIST/8.2.1', 'name': 'SuperLU_DIST', 'version': '8.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/mpi4py/3.1.5', 'short_mod_name': 'mpi4py/3.1.5', 'name': 'mpi4py', 'version': '3.1.5', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}]
== 2024-06-28 16:48:37,407 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/Python/3.11.5', 'short_mod_name': 'Python/3.11.5', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/SciPy-bundle/2023.11', 'short_mod_name': 'SciPy-bundle/2023.11', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/Boost/1.83.0', 'short_mod_name': 'Boost/1.83.0', 'name': 'Boost', 'version': '1.83.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SCOTCH/7.0.4', 'short_mod_name': 'SCOTCH/7.0.4', 'name': 'SCOTCH', 'version': '7.0.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuiteSparse/7.7.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/7.7.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '7.7.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/Hypre/2.31.0', 'short_mod_name': 'Hypre/2.31.0', 'name': 'Hypre', 'version': '2.31.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuperLU_DIST/8.2.1', 'short_mod_name': 'SuperLU_DIST/8.2.1', 'name': 'SuperLU_DIST', 'version': '8.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/mpi4py/3.1.5', 'short_mod_name': 'mpi4py/3.1.5', 'name': 'mpi4py', 'version': '3.1.5', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}]
== 2024-06-28 16:48:37,408 environment.py:93 INFO Environment variable PETSC_DIR set to /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0 (previously undefined)
== 2024-06-28 16:48:37,408 run.py:180 DEBUG run_cmd: Output of " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] " will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-henfg_n5.log
== 2024-06-28 16:48:37,411 run.py:221 DEBUG run_cmd: running cmd ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0)
== 2024-06-28 16:48:37,411 run.py:247 INFO running cmd: ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so]
== 2024-06-28 16:50:31,534 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): cmd " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] " exited with exit code 1 and output:
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
The version of PETSc you are using is out-of-date, we recommend updating to the new release
Available Version: 3.21.2 Installed Version: 3.21.0
https://petsc.org/release/download/
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
=============================================================================================
Configuring PETSc to compile on your system
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CC=mpicc. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CXX=mpicxx. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FC=mpifort. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F77=mpifort. Ignoring it! Use "./configure F77=$F77" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F90=mpifort. Ignoring it! Use "./configure F90=$F90" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno
-fopenmp -fPIC. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CXXFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno
-fopenmp -fPIC. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FCFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno
-fopenmp -fPIC. Ignoring it! Use "./configure FCFLAGS=$FCFLAGS" if you really want to use
this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno
-fopenmp -fPIC. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F90FLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno
-fopenmp -fPIC. Ignoring it! Use "./configure F90FLAGS=$F90FLAGS" if you really want to
use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CPPFLAGS=-I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include
-I/eb/software/ParMETIS/4.0.3-gompi-2023b/include
-I/eb/software/Hypre/2.31.0-foss-2023b/include
-I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include
-I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include
-I/eb/software/SCOTCH/7.0.4-gompi-2023b/include
-I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include
-I/eb/software/Boost/1.83.0-GCC-13.2.0/include
-I/eb/software/Python/3.11.5-GCCcore-13.2.0/include
-I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include
-I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include
-I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas. Ignoring it! Use
"./configure CPPFLAGS=$CPPFLAGS" if you really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: LDFLAGS=-L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64
-L/eb/software/mpi4py/3.1.5-gompi-2023b/lib
-L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64
-L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib
-L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64
-L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib
-L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib
-L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64
-L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib
-L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64
-L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib
-L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib
-L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64
-L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib
-L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib
-L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64
-L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib
-L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64
-L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib
-L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64
-L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib
-L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64
-L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib
-L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64
-L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64
-L/eb/software/GCCcore/13.2.0/lib. Ignoring it! Use "./configure LDFLAGS=$LDFLAGS" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: LIBS=-lm -lpthread. Ignoring it, since it's also set on
command line
=============================================================================================
*********************************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
---------------------------------------------------------------------------------------------
--with-suitesparse-lib=['/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so',
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so'] and
--with-suitesparse-include=['/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include']
did not work
*********************************************************************************************
(at easybuild/tools/run.py:682 in parse_cmd_output)
== 2024-06-28 16:50:31,534 build_log.py:267 INFO ... (took 1 min 54 secs)
== 2024-06-28 16:50:31,535 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /eb/software
== 2024-06-28 16:50:31,535 filetools.py:2013 INFO Removing lock /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock...
== 2024-06-28 16:50:31,535 filetools.py:383 INFO Path /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock successfully removed.
== 2024-06-28 16:50:31,535 filetools.py:2017 INFO Lock removed: /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock
== 2024-06-28 16:50:31,535 easyblock.py:4285 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=n
== 2024-06-28 16:50:31,536 easyblock.py:328 INFO Closing log for application name PETSc version 3.21.0
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment