Created
June 28, 2024 14:50
-
-
Save zao/65292f56c353c569058b357f02cd4721 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /eb/tmp/eb-4pe4i5zk/files_pr20568/p/PETSc/PETSc-3.21.0-foss-2023b.eb (PR(s) #20568)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SCOTCH/7.0.4-gompi-2023b for SCOTCH was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/MUMPS/5.6.1-foss-2023b-metis for MUMPS was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0 for SuiteSparse was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/Hypre/2.31.0-foss-2023b for Hypre was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/ParMETIS/4.0.3-gompi-2023b for ParMETIS was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/SuperLU_DIST/8.2.1-foss-2023b for SuperLU_DIST was found in environment | |
== 2024-06-28 16:48:37,270 toolchain.py:432 DEBUG get_software_root software root /eb/software/mpi4py/3.1.5-gompi-2023b for mpi4py was found in environment | |
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/include was not found | |
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/lib64 was not found | |
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/CMake/3.27.6-GCCcore-13.2.0/lib was not found | |
== 2024-06-28 16:48:37,270 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/SciPy-bundle/2023.11-gfbf-2023b/include was not found | |
== 2024-06-28 16:48:37,271 variables.py:203 WARNING flags_for_subdirs: directory /eb/software/mpi4py/3.1.5-gompi-2023b/include was not found | |
== 2024-06-28 16:48:37,272 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,273 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,273 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC to mpicc | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable CC set to mpicc (previously undefined) | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable EBVARCC set to mpicc (previously undefined) | |
== 2024-06-28 16:48:37,274 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC_SEQ to gcc | |
== 2024-06-28 16:48:37,274 environment.py:93 INFO Environment variable CC_SEQ set to gcc (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCC_SEQ set to gcc (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CPPFLAGS set to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include -I/eb/software/ParMETIS/4.0.3-gompi-2023b/include -I/eb/software/Hypre/2.31.0-foss-2023b/include -I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include -I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include -I/eb/software/SCOTCH/7.0.4-gompi-2023b/include -I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include -I/eb/software/Boost/1.83.0-GCC-13.2.0/include -I/eb/software/Python/3.11.5-GCCcore-13.2.0/include -I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX to mpicxx | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXX set to mpicxx (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXX set to mpicxx (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX_SEQ to g++ | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable CXX_SEQ set to g++ (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARCXX_SEQ set to g++ (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77 to mpifort | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable F77 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,275 environment.py:93 INFO Environment variable EBVARF77 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,275 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77_SEQ to gfortran | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F77_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF77_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90 to mpifort | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90_SEQ to gfortran | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable F90_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARF90_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC to mpifort | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FC set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFC set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,276 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC_SEQ to gfortran | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable FC_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,276 environment.py:93 INFO Environment variable EBVARFC_SEQ set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
== 2024-06-28 16:48:37,277 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a | |
== 2024-06-28 16:48:37,277 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/include (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS to libfftw3_mpi.so,libfftw3.so | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3_mpi.so,libfftw3.so (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS_MT to libfftw3_omp.so,libfftw3.so,libpthread.so | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3_omp.so,libfftw3.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3_mpi.a,libfftw3.a | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3_mpi.a,libfftw3.a (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,278 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,278 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,279 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,279 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LDFLAGS set to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 -L/eb/software/mpi4py/3.1.5-gompi-2023b/lib -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 -L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 -L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib -L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 -L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 -L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 -L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 -L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 -L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 -L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 -L/eb/software/GCCcore/13.2.0/lib (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lflexiblas -lgfortran | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lflexiblas -lgfortran -lpthread | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3_mpi -lfftw3 | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3_mpi -lfftw3 (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3_omp -lfftw3 -lpthread | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lflexiblas -lgfortran | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,280 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lflexiblas -lgfortran -lpthread | |
== 2024-06-28 16:48:37,280 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lflexiblas -lgfortran -lpthread | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lflexiblas -lgfortran | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lflexiblas -lgfortran | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lflexiblas -lgfortran -lpthread | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,281 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
== 2024-06-28 16:48:37,282 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable MPI_INC_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include (previously undefined) | |
== 2024-06-28 16:48:37,282 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/include (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64 | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64 (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64 (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /eb/software/OpenMPI/4.1.6-GCC-13.2.0/lib64/libmpi.so (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,283 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,283 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
== 2024-06-28 16:48:37,284 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a | |
== 2024-06-28 16:48:37,284 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
== 2024-06-28 16:48:37,285 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so | |
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
== 2024-06-28 16:48:37,285 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a | |
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,285 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
== 2024-06-28 16:48:37,285 toolchain.py:961 INFO Putting RPATH wrappers in place... | |
== 2024-06-28 16:48:37,286 toolchain.py:989 DEBUG No general RPATH filter specified, falling back to default: ['/lib.*', '/usr.*'] | |
== 2024-06-28 16:48:37,286 toolchain.py:991 DEBUG Combined RPATH filter: '/lib.*,/usr.*,/eb/tmp/eb-4pe4i5zk.*,/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b.*,.*/lib(64)?/stubs/?.*,.*/stubs/lib(64)?/?.*' | |
== 2024-06-28 16:48:37,286 toolchain.py:994 DEBUG Combined RPATH include paths: '/eb/software/PETSc/3.21.0-foss-2023b/lib,/eb/software/PETSc/3.21.0-foss-2023b/lib64,$ORIGIN,$ORIGIN/../lib,$ORIGIN/../lib64' | |
== 2024-06-28 16:48:37,286 filetools.py:526 INFO Command gcc found at /eb/software/GCCcore/13.2.0/bin/gcc | |
== 2024-06-28 16:48:37,286 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,287 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc | |
== 2024-06-28 16:48:37,287 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc: 0o100644 | |
== 2024-06-28 16:48:37,287 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc: 0o100 | |
== 2024-06-28 16:48:37,287 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc to 0o100744 | |
== 2024-06-28 16:48:37,287 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,287 filetools.py:526 INFO Command gcc found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc | |
== 2024-06-28 16:48:37,287 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/gcc: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper/gcc (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_gcc.log) | |
== 2024-06-28 16:48:37,287 filetools.py:526 INFO Command g++ found at /eb/software/GCCcore/13.2.0/bin/g++ | |
== 2024-06-28 16:48:37,287 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,287 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ | |
== 2024-06-28 16:48:37,287 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++: 0o100644 | |
== 2024-06-28 16:48:37,288 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++: 0o100 | |
== 2024-06-28 16:48:37,288 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ to 0o100744 | |
== 2024-06-28 16:48:37,288 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,288 filetools.py:526 INFO Command g++ found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ | |
== 2024-06-28 16:48:37,288 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/g++: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper/g++ (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_g++.log) | |
== 2024-06-28 16:48:37,288 filetools.py:526 INFO Command gfortran found at /eb/software/GCCcore/13.2.0/bin/gfortran | |
== 2024-06-28 16:48:37,288 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,288 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran | |
== 2024-06-28 16:48:37,288 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran: 0o100644 | |
== 2024-06-28 16:48:37,288 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran: 0o100 | |
== 2024-06-28 16:48:37,288 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran to 0o100744 | |
== 2024-06-28 16:48:37,288 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command gfortran found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran | |
== 2024-06-28 16:48:37,289 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/GCCcore/13.2.0/bin/gfortran: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper/gfortran (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_gfortran.log) | |
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command ld found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld | |
== 2024-06-28 16:48:37,289 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,289 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld | |
== 2024-06-28 16:48:37,289 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld: 0o100644 | |
== 2024-06-28 16:48:37,289 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld: 0o100 | |
== 2024-06-28 16:48:37,289 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld to 0o100744 | |
== 2024-06-28 16:48:37,289 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,289 filetools.py:526 INFO Command ld found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld | |
== 2024-06-28 16:48:37,289 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper/ld (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.log) | |
== 2024-06-28 16:48:37,290 filetools.py:526 INFO Command ld.gold found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.gold | |
== 2024-06-28 16:48:37,290 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,290 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold | |
== 2024-06-28 16:48:37,290 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold: 0o100644 | |
== 2024-06-28 16:48:37,290 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold: 0o100 | |
== 2024-06-28 16:48:37,290 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold to 0o100744 | |
== 2024-06-28 16:48:37,290 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,290 filetools.py:526 INFO Command ld.gold found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold | |
== 2024-06-28 16:48:37,290 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.gold: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper/ld.gold (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.gold.log) | |
== 2024-06-28 16:48:37,291 filetools.py:526 INFO Command ld.bfd found at /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.bfd | |
== 2024-06-28 16:48:37,291 filetools.py:1912 INFO Creating directory /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper (parents: True, set_gid: False, sticky: False) | |
== 2024-06-28 16:48:37,291 filetools.py:1764 INFO Adjusting permissions recursively for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
== 2024-06-28 16:48:37,291 filetools.py:1794 DEBUG Current permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd: 0o100644 | |
== 2024-06-28 16:48:37,291 filetools.py:1799 DEBUG Adding permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd: 0o100 | |
== 2024-06-28 16:48:37,291 filetools.py:1814 DEBUG Changing permissions for /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd to 0o100744 | |
== 2024-06-28 16:48:37,291 environment.py:93 INFO Environment variable PATH set to /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin (previous value: '/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.gold_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gfortran_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gxx_wrapper:/eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/gcc_wrapper:/eb/software/ParMETIS/4.0.3-gompi-2023b/bin:/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/bin:/eb/software/SCOTCH/7.0.4-gompi-2023b/bin:/eb/software/METIS/5.1.0-GCCcore-13.2.0/bin:/eb/software/ICU/74.1-GCCcore-13.2.0/sbin:/eb/software/ICU/74.1-GCCcore-13.2.0/bin:/eb/software/zstd/1.5.5-GCCcore-13.2.0/bin:/eb/software/lz4/1.9.4-GCCcore-13.2.0/bin:/eb/software/gzip/1.13-GCCcore-13.2.0/bin:/eb/software/SciPy-bundle/2023.11-gfbf-2023b/bin:/eb/software/pybind11/2.11.1-GCCcore-13.2.0/bin:/eb/software/Python-bundle-PyPI/2023.10-GCCcore-13.2.0/bin:/eb/software/virtualenv/20.24.6-GCCcore-13.2.0/bin:/eb/software/Python/3.11.5-GCCcore-13.2.0/bin:/eb/software/SQLite/3.43.1-GCCcore-13.2.0/bin:/eb/software/Tcl/8.6.13-GCCcore-13.2.0/bin:/eb/software/CMake/3.27.6-GCCcore-13.2.0/bin:/eb/software/libarchive/3.7.2-GCCcore-13.2.0/bin:/eb/software/cURL/8.3.0-GCCcore-13.2.0/bin:/eb/software/bzip2/1.0.8-GCCcore-13.2.0/bin:/eb/software/ncurses/6.4-GCCcore-13.2.0/bin:/eb/software/FFTW/3.3.10-GCC-13.2.0/bin:/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/bin:/eb/software/OpenMPI/4.1.6-GCC-13.2.0/bin:/eb/software/UCC/1.2.0-GCCcore-13.2.0/bin:/eb/software/PMIx/4.2.6-GCCcore-13.2.0/bin:/eb/software/libfabric/1.19.0-GCCcore-13.2.0/bin:/eb/software/UCX/1.15.0-GCCcore-13.2.0/bin:/eb/software/libevent/2.1.12-GCCcore-13.2.0/bin:/eb/software/OpenSSL/1.1/bin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/sbin:/eb/software/hwloc/2.9.2-GCCcore-13.2.0/bin:/eb/software/libxml2/2.11.5-GCCcore-13.2.0/bin:/eb/software/XZ/5.4.4-GCCcore-13.2.0/bin:/eb/software/numactl/2.0.16-GCCcore-13.2.0/bin:/eb/software/binutils/2.40-GCCcore-13.2.0/bin:/eb/software/GCCcore/13.2.0/bin:/eb/develop/easybuild-framework:/eb/bin:/home/easybuild/.yarn/bin:/home/easybuild/.config/yarn/global/node_modules/.bin:/home/easybuild/.local/bin:/home/easybuild/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
== 2024-06-28 16:48:37,291 filetools.py:526 INFO Command ld.bfd found at /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
== 2024-06-28 16:48:37,291 toolchain.py:1045 INFO RPATH wrapper script for /eb/software/binutils/2.40-GCCcore-13.2.0/bin/ld.bfd: /eb/tmp/eb-4pe4i5zk/tmpvfinavtk/rpath_wrappers/ld.bfd_wrapper/ld.bfd (log: /eb/tmp/eb-4pe4i5zk/rpath_wrapper_ld.bfd.log) | |
== 2024-06-28 16:48:37,291 toolchain.py:442 DEBUG get_software_version software version 4.1.6 for OpenMPI was found in environment | |
== 2024-06-28 16:48:37,291 easyblock.py:2139 INFO Using /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/ as start dir | |
== 2024-06-28 16:48:37,291 easyblock.py:2142 DEBUG Changed to real build directory /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/ (start_dir) | |
== 2024-06-28 16:48:37,291 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-28 16:48:37,292 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-28 16:48:37,292 petsc.py:100 INFO Python included as runtime dependency, so enabling Python support | |
== 2024-06-28 16:48:37,292 build_log.py:267 INFO ... (took 3 secs) | |
== 2024-06-28 16:48:37,293 easyblock.py:3941 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-06-28 16:48:37,293 build_log.py:267 INFO configuring... | |
== 2024-06-28 16:48:37,294 easyblock.py:3950 INFO Starting configure step | |
== 2024-06-28 16:48:37,294 easyconfig.py:1702 INFO Generating template values... | |
== 2024-06-28 16:48:37,294 templates.py:201 DEBUG config: PETSc EasyConfig @ /eb/tmp/eb-4pe4i5zk/files_pr20568/p/PETSc/PETSc-3.21.0-foss-2023b.eb | |
== 2024-06-28 16:48:37,294 templates.py:231 DEBUG version found in easyconfig is 3.21.0 | |
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: name, config: PETSc | |
== 2024-06-28 16:48:37,294 templates.py:333 DEBUG name: parallel, config: 12 | |
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: version, config: 3.21.0 | |
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: versionsuffix, config: | |
== 2024-06-28 16:48:37,295 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-06-28 16:48:37,295 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-06-28 16:48:37,295 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-06-28 16:48:37,295 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='petsc', builddir='/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b', github_account='petsc', installdir='/eb/software/PETSc/3.21.0-foss-2023b', module_name='PETSc/3.21.0', mpi_cmd_prefix='mpirun -n 1', name='PETSc', nameletter='P', nameletterlower='p', namelower='petsc', parallel='12', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.5', start_dir='/eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0/', sysroot='', toolchain_name='foss', toolchain_version='2023b', version='3.21.0', version_major='3', version_major_minor='3.21', version_minor='21', versionprefix='', versionsuffix='' | |
== 2024-06-28 16:48:37,295 easyblock.py:3958 INFO Running method configure_step part of step configure | |
== 2024-06-28 16:48:37,295 run.py:180 DEBUG run_cmd: Output of "python -c 'import numpy'" will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-v4ezxfe1.log | |
== 2024-06-28 16:48:37,296 run.py:221 DEBUG run_cmd: running cmd python -c 'import numpy' (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0) | |
== 2024-06-28 16:48:37,297 run.py:247 INFO running cmd: python -c 'import numpy' | |
== 2024-06-28 16:48:37,386 run.py:687 INFO cmd "python -c 'import numpy'" exited with exit code 0 and output: | |
== 2024-06-28 16:48:37,387 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-06-28 16:48:37,387 run.py:180 DEBUG run_cmd: Output of "python -c 'import mpi4py'" will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-8tyz_tfz.log | |
== 2024-06-28 16:48:37,388 run.py:221 DEBUG run_cmd: running cmd python -c 'import mpi4py' (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0) | |
== 2024-06-28 16:48:37,388 run.py:247 INFO running cmd: python -c 'import mpi4py' | |
== 2024-06-28 16:48:37,407 run.py:687 INFO cmd "python -c 'import mpi4py'" exited with exit code 0 and output: | |
== 2024-06-28 16:48:37,407 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-06-28 16:48:37,407 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/Python/3.11.5', 'short_mod_name': 'Python/3.11.5', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/SciPy-bundle/2023.11', 'short_mod_name': 'SciPy-bundle/2023.11', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/Boost/1.83.0', 'short_mod_name': 'Boost/1.83.0', 'name': 'Boost', 'version': '1.83.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SCOTCH/7.0.4', 'short_mod_name': 'SCOTCH/7.0.4', 'name': 'SCOTCH', 'version': '7.0.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuiteSparse/7.7.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/7.7.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '7.7.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/Hypre/2.31.0', 'short_mod_name': 'Hypre/2.31.0', 'name': 'Hypre', 'version': '2.31.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuperLU_DIST/8.2.1', 'short_mod_name': 'SuperLU_DIST/8.2.1', 'name': 'SuperLU_DIST', 'version': '8.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/mpi4py/3.1.5', 'short_mod_name': 'mpi4py/3.1.5', 'name': 'mpi4py', 'version': '3.1.5', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-28 16:48:37,407 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Compiler/GCCcore/13.2.0/CMake/3.27.6', 'short_mod_name': 'CMake/3.27.6', 'name': 'CMake', 'version': '3.27.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/Python/3.11.5', 'short_mod_name': 'Python/3.11.5', 'name': 'Python', 'version': '3.11.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/SciPy-bundle/2023.11', 'short_mod_name': 'SciPy-bundle/2023.11', 'name': 'SciPy-bundle', 'version': '2023.11', 'versionsuffix': '', 'toolchain': {'name': 'gfbf', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCC/13.2.0/Boost/1.83.0', 'short_mod_name': 'Boost/1.83.0', 'name': 'Boost', 'version': '1.83.0', 'versionsuffix': '', 'toolchain': {'name': 'GCC', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Compiler/GCCcore/13.2.0/METIS/5.1.0', 'short_mod_name': 'METIS/5.1.0', 'name': 'METIS', 'version': '5.1.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '13.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SCOTCH/7.0.4', 'short_mod_name': 'SCOTCH/7.0.4', 'name': 'SCOTCH', 'version': '7.0.4', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/MUMPS/5.6.1-metis', 'short_mod_name': 'MUMPS/5.6.1-metis', 'name': 'MUMPS', 'version': '5.6.1', 'versionsuffix': '-metis', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuiteSparse/7.7.0-METIS-5.1.0', 'short_mod_name': 'SuiteSparse/7.7.0-METIS-5.1.0', 'name': 'SuiteSparse', 'version': '7.7.0', 'versionsuffix': '-METIS-5.1.0', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/Hypre/2.31.0', 'short_mod_name': 'Hypre/2.31.0', 'name': 'Hypre', 'version': '2.31.0', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/ParMETIS/4.0.3', 'short_mod_name': 'ParMETIS/4.0.3', 'name': 'ParMETIS', 'version': '4.0.3', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/SuperLU_DIST/8.2.1', 'short_mod_name': 'SuperLU_DIST/8.2.1', 'name': 'SuperLU_DIST', 'version': '8.2.1', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'MPI/GCC/13.2.0/OpenMPI/4.1.6/mpi4py/3.1.5', 'short_mod_name': 'mpi4py/3.1.5', 'name': 'mpi4py', 'version': '3.1.5', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2023b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-06-28 16:48:37,408 environment.py:93 INFO Environment variable PETSC_DIR set to /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0 (previously undefined) | |
== 2024-06-28 16:48:37,408 run.py:180 DEBUG run_cmd: Output of " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] " will be logged to /eb/tmp/eb-4pe4i5zk/easybuild-run_cmd-henfg_n5.log | |
== 2024-06-28 16:48:37,411 run.py:221 DEBUG run_cmd: running cmd ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] (in /eb/tmp/eb-build/PETSc/3.21.0/foss-2023b/petsc-3.21.0) | |
== 2024-06-28 16:48:37,411 run.py:247 INFO running cmd: ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] | |
== 2024-06-28 16:50:31,534 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): cmd " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --with-mpi=1 --with-build-step-np=12 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-fftw=1 --with-fftw-lib=[/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib/libfftw3_mpi.a,libfftw3.a] --with-fftw-include=/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include --with-scalapack=1 --with-scalapack-lib=[/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib/libscalapack.a,libflexiblas.a,libgfortran.a] --with-blas-lapack-lib=[/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib/libflexiblas.a,libgfortran.a] --with-python=1 --with-python-dir=/eb/software/Python/3.11.5-GCCcore-13.2.0 --with-boost=1 --with-boost-dir=/eb/software/Boost/1.83.0-GCC-13.2.0 --with-metis=1 --with-metis-dir=/eb/software/METIS/5.1.0-GCCcore-13.2.0 --with-mumps=1 --with-mumps-dir=/eb/software/MUMPS/5.6.1-foss-2023b-metis --with-hypre=1 --with-hypre-dir=/eb/software/Hypre/2.31.0-foss-2023b --with-parmetis=1 --with-parmetis-dir=/eb/software/ParMETIS/4.0.3-gompi-2023b --with-superlu_dist=1 --with-superlu_dist-dir=/eb/software/SuperLU_DIST/8.2.1-foss-2023b --with-ptscotch=1 --with-ptscotch-include=[/eb/software/SCOTCH/7.0.4-gompi-2023b/include] --with-ptscotch-lib=[/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotchparmetisv3.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libptscotcherr.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libesmumps.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotch.a,/eb/software/SCOTCH/7.0.4-gompi-2023b/lib/libscotcherr.a] --with-suitesparse=1 --with-suitesparse-include=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include] --with-suitesparse-lib=[/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so,/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so] " exited with exit code 1 and output: | |
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | |
The version of PETSc you are using is out-of-date, we recommend updating to the new release | |
Available Version: 3.21.2 Installed Version: 3.21.0 | |
https://petsc.org/release/download/ | |
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | |
============================================================================================= | |
Configuring PETSc to compile on your system | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: CC=mpicc. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: CXX=mpicxx. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: FC=mpifort. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: F77=mpifort. Ignoring it! Use "./configure F77=$F77" if you | |
really want to use this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: F90=mpifort. Ignoring it! Use "./configure F90=$F90" if you | |
really want to use this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: CFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno | |
-fopenmp -fPIC. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: CXXFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno | |
-fopenmp -fPIC. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: FCFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno | |
-fopenmp -fPIC. Ignoring it! Use "./configure FCFLAGS=$FCFLAGS" if you really want to use | |
this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: FFLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno | |
-fopenmp -fPIC. Ignoring it, since it's also set on command line | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: F90FLAGS=-O2 -ftree-vectorize -march=native -fno-math-errno | |
-fopenmp -fPIC. Ignoring it! Use "./configure F90FLAGS=$F90FLAGS" if you really want to | |
use this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: CPPFLAGS=-I/eb/software/SuperLU_DIST/8.2.1-foss-2023b/include | |
-I/eb/software/ParMETIS/4.0.3-gompi-2023b/include | |
-I/eb/software/Hypre/2.31.0-foss-2023b/include | |
-I/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include | |
-I/eb/software/MUMPS/5.6.1-foss-2023b-metis/include | |
-I/eb/software/SCOTCH/7.0.4-gompi-2023b/include | |
-I/eb/software/METIS/5.1.0-GCCcore-13.2.0/include | |
-I/eb/software/Boost/1.83.0-GCC-13.2.0/include | |
-I/eb/software/Python/3.11.5-GCCcore-13.2.0/include | |
-I/eb/software/FFTW.MPI/3.3.10-gompi-2023b/include | |
-I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include | |
-I/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas. Ignoring it! Use | |
"./configure CPPFLAGS=$CPPFLAGS" if you really want to use this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: LDFLAGS=-L/eb/software/mpi4py/3.1.5-gompi-2023b/lib64 | |
-L/eb/software/mpi4py/3.1.5-gompi-2023b/lib | |
-L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib64 | |
-L/eb/software/SuperLU_DIST/8.2.1-foss-2023b/lib | |
-L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib64 | |
-L/eb/software/ParMETIS/4.0.3-gompi-2023b/lib | |
-L/eb/software/Hypre/2.31.0-foss-2023b/lib64 -L/eb/software/Hypre/2.31.0-foss-2023b/lib | |
-L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib64 | |
-L/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib | |
-L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib64 | |
-L/eb/software/MUMPS/5.6.1-foss-2023b-metis/lib | |
-L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib64 -L/eb/software/SCOTCH/7.0.4-gompi-2023b/lib | |
-L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib64 | |
-L/eb/software/METIS/5.1.0-GCCcore-13.2.0/lib | |
-L/eb/software/Boost/1.83.0-GCC-13.2.0/lib64 -L/eb/software/Boost/1.83.0-GCC-13.2.0/lib | |
-L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib64 | |
-L/eb/software/SciPy-bundle/2023.11-gfbf-2023b/lib | |
-L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib64 | |
-L/eb/software/Python/3.11.5-GCCcore-13.2.0/lib | |
-L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib64 | |
-L/eb/software/FFTW.MPI/3.3.10-gompi-2023b/lib | |
-L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 | |
-L/eb/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib | |
-L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 | |
-L/eb/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/eb/software/GCCcore/13.2.0/lib64 | |
-L/eb/software/GCCcore/13.2.0/lib. Ignoring it! Use "./configure LDFLAGS=$LDFLAGS" if you | |
really want to use this value | |
============================================================================================= | |
============================================================================================= | |
***** WARNING ***** | |
Found environment variable: LIBS=-lm -lpthread. Ignoring it, since it's also set on | |
command line | |
============================================================================================= | |
********************************************************************************************* | |
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): | |
--------------------------------------------------------------------------------------------- | |
--with-suitesparse-lib=['/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libumfpack.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libklu.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspqr.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcholmod.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libbtf.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libccolamd.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcolamd.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcxsparse.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libldl.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/librbio.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libspex.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libcamd.so', | |
'/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/lib/libamd.so'] and | |
--with-suitesparse-include=['/eb/software/SuiteSparse/7.7.0-foss-2023b-METIS-5.1.0/include'] | |
did not work | |
********************************************************************************************* | |
(at easybuild/tools/run.py:682 in parse_cmd_output) | |
== 2024-06-28 16:50:31,534 build_log.py:267 INFO ... (took 1 min 54 secs) | |
== 2024-06-28 16:50:31,535 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /eb/software | |
== 2024-06-28 16:50:31,535 filetools.py:2013 INFO Removing lock /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock... | |
== 2024-06-28 16:50:31,535 filetools.py:383 INFO Path /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock successfully removed. | |
== 2024-06-28 16:50:31,535 filetools.py:2017 INFO Lock removed: /eb/software/.locks/_eb_software_PETSc_3.21.0-foss-2023b.lock | |
== 2024-06-28 16:50:31,535 easyblock.py:4285 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/eb/software/PETSc/3.21.0-foss-2023b --LIBS="$LIBS -lrt" --with-mpi4py=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=n | |
== 2024-06-28 16:50:31,536 easyblock.py:328 INFO Closing log for application name PETSc version 3.21.0 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment