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zhilongjia/GPL2BioC_annotation.R

Created September 21, 2015 13:05
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Mappings between GPL and Bioconductor microarry annotation packages
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GPL2BioC_annotation.R
# Mappings between GPL and Bioconductor microarry annotation packages
# 2015-09-21
library(GEOmetadb)
if(!file.exists('GEOmetadb.sqlite')) getSQLiteFile()
con <- dbConnect(SQLite(),'GEOmetadb.sqlite')
write.table( getBiocPlatformMap(con), file="GPL_Bioconductor.txt", sep="\t", quote=F, row.names=F)
# ref: http://www.bioconductor.org/packages/release/bioc/vignettes/GEOmetadb/inst/doc/GEOmetadb.html#mappings-between-gpl-and-bioconductor-microarry-annotation-packages
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