zhujack

## Functions to expand VariantAnnotation CollapsedVCF object and convert to a data frame
## Author: Sean Davis and Jack Zhu@Meltzerlab, 12/18/2016

## Function to parse ANN column in to a dataframe
.anncols = function(anncol,headerstring) {
    anncols = strsplit(sub("Functional annotations: '",'',
                           headerstring),' \\| ')[[1]]
    dfannempty = data.frame(matrix(vector(), 0, length(anncols),
                                   dimnames=list(c(), anncols)),
                            stringsAsFactors=F)

zhujack

## Use find
#
for f in $(find . -maxdepth 1 -type l);do cp --remove-destination $(readlink $f) $f;done;