Created
August 28, 2015 12:33
-
-
Save zindel/e4c43f4fe36fafd01eac to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| /wizard/todo: | |
| widget: !<Wizard> | |
| initial_context: | |
| individual: A00F5818 | |
| states: | |
| todo: | |
| not-skipped-not-complete: | |
| title: Not Skipped | |
| expression: status!='skipped'&status!='complete' | |
| measure: | |
| title: Measure Todo | |
| expression: requirement.asset_type='measure'|measure_todo_fulfillment | |
| sample: | |
| title: Sample Todo | |
| expression: requirement.asset_type='sample'|sample_todo_fulfillment | |
| communication: | |
| title: Communication Todo | |
| expression: requirement.asset_type='communication'|communication_todo_fulfillment | |
| consent: | |
| title: Consent Todo | |
| expression: requirement.asset_type='consent'|consent_todo_fulfillment | |
| other: | |
| title: Other Todo | |
| expression: requirement.asset_type='consent' | |
| awaiting-measure: | |
| title: Measure Todo | |
| expression: (requirement.asset_type='measure'|measure_todo_fulfillment)&status!='skipped'&status!='complete' | |
| awaiting-sample: | |
| title: Sample Todo | |
| expression: (requirement.asset_type='sample'|sample_todo_fulfillment)&status!='skipped'&status!='complete' | |
| awaiting-communication: | |
| title: Communication Todo | |
| expression: (requirement.asset_type='communication'|communication_todo_fulfillment)&status!='skipped'&status!='complete' | |
| awaiting-consent: | |
| title: Consent Todo | |
| expression: (requirement.asset_type='consent'|consent_todo_fulfillment)&status!='skipped'&status!='complete' | |
| awaiting-other: | |
| title: Other Todo | |
| expression: requirement.asset_type='other'&status!='skipped'&status!='complete' | |
| path: | |
| - pick-todo: | |
| - view-todo: | |
| - proceed-measure-todo: | |
| - proceed-sample-todo: | |
| - view-sample: | |
| - edit-sample: | |
| - pick-tube: | |
| - view-tube: | |
| - edit-tube: | |
| - use-sample: | |
| - pick-tube-usage: | |
| - view-used-tube: | |
| - add-tube: | |
| - pick-used-tube: | |
| - view-used-tube: | |
| - proceed-communication-todo: | |
| - proceed-consent-todo: | |
| - proceed-other-todo: | |
| - skip-todo: | |
| - adhoc-measure-todo: | |
| - adhoc-consent-todo: | |
| - adhoc-sample-todo: | |
| actions: | |
| pick-todo: | |
| type: pick | |
| entity: todo | |
| title: Pick Todo | |
| input: | |
| - individual: individual | |
| mask: individual=$individual | |
| columns: | |
| - value_key: study_title | |
| type: calculation | |
| expression: study.title | |
| label: Study | |
| - value_key: time_period_title | |
| type: calculation | |
| expression: time_period.title | |
| label: Visit Name | |
| - value_key: expected_completion_date | |
| label: Expected Completion | |
| - value_key: title | |
| label: Title | |
| - value_key: status | |
| label: Status | |
| view-todo: | |
| type: view | |
| entity: todo | |
| title: Details | |
| skip-todo: | |
| type: skip-todo | |
| title: Skip Todo | |
| submit_to: !slot | |
| name: submit_to | |
| default: /htsql/skip_todo.htsql | |
| todo_details: !slot | |
| name: todo_details | |
| default: /data/individual/todo_details | |
| entity: todo[not-skipped-not-complete] | |
| proceed-measure-todo: | |
| type: proceed-measure-todo | |
| entity: todo[awaiting-measure] | |
| title: Fulfill Data Entry Todo | |
| data_entry_link: !slot | |
| name: data_entry_link | |
| default: rex.study.data_entry_admin:/data-entry | |
| reconciliation_link: !slot | |
| name: reconciliation_link | |
| default: rex.study.data_reconciliation_admin:/reconcile | |
| acquire_channel: !slot | |
| name: acquire_channel | |
| default: /data/acquire_channel | |
| measure_candidates: !slot | |
| name: measure_candidates | |
| default: /data/individual/todo_measure_candidates | |
| measure_types: !slot | |
| name: measure_types | |
| default: /data/individual/todo_measure_types | |
| measure_fulfillment: !slot | |
| name: measure_fulfillment | |
| default: /data/individual/todo_measure_fulfillment | |
| todo_details: !slot | |
| name: todo_details | |
| default: /data/individual/todo_details | |
| use_query: !slot | |
| name: use_query | |
| default: /htsql/use_existing_measure.htsql | |
| create_query: !slot | |
| name: use_query | |
| default: /htsql/create_new_measure.htsql | |
| clone_query: !slot | |
| name: clone_query | |
| default: /htsql/clone_existing_measure.htsql | |
| proceed-consent-todo: | |
| type: proceed-consent-todo | |
| entity: todo[awaiting-consent] | |
| title: Fulfill Consent Todo | |
| consent_types: !slot | |
| name: consent_types | |
| default: /data/individual/todo_consent_types | |
| create_query: !slot | |
| name: use_query | |
| default: /htsql/create_new_consent.htsql | |
| todo_details: !slot | |
| name: todo_details | |
| default: /data/individual/todo_details | |
| individual_data_spec: !slot | |
| name: individual_data_spec | |
| default: /data/individual/autocomplete | |
| consent_save: !slot | |
| name: consent_save | |
| default: /data/consent/save | |
| storage_link: !slot | |
| name: storage_link | |
| default: rex.file:/ | |
| download_link: !slot | |
| name: download_link | |
| default: /data/consent/scan | |
| proceed-sample-todo: | |
| type: proceed-sample-todo | |
| entity: todo[awaiting-sample] | |
| title: Fulfill Sample Todo | |
| sample_types: !slot | |
| name: sample_types | |
| default: /data/individual/todo_sample_types | |
| create_query: !slot | |
| name: use_query | |
| default: /htsql/create_new_sample.htsql | |
| todo_details: !slot | |
| name: todo_details | |
| default: /data/individual/todo_details | |
| view_fields: !slot | |
| name: form_fields | |
| default: | |
| - value_key: sample_type | |
| label: Sample Type | |
| - value_key: individual | |
| label: Individual | |
| - value_key: code | |
| label: Code | |
| - value_key: code_text | |
| label: Code Text | |
| - value_key: date_collected | |
| label: Date Collected | |
| - value_key: collected_by | |
| label: Collected By | |
| - value_key: derived_from | |
| label: Derived From | |
| sample_details: !slot | |
| name: sample_details | |
| default: /data/individual/sample_details | |
| proceed-communication-todo: | |
| type: edit | |
| entity: todo[awaiting-communication] | |
| title: Fulfill Communication Todo | |
| proceed-other-todo: | |
| type: edit | |
| entity: todo[awaiting-other] | |
| title: Fulfill Other Todo | |
| ######################################### | |
| ## Adhoc actions of TodoWizard: | |
| ######################################### | |
| adhoc-measure-todo: | |
| type: make | |
| title: Add Measure Adhoc ToDo | |
| icon: plus | |
| entity: todo | |
| width: 700 | |
| submit_button: Submit | |
| value: | |
| individual: $individual | |
| num_required_entries: '2' | |
| acquire_channel: entry | |
| fields: | |
| - value_key: study | |
| label: Study | |
| required: true | |
| - value_key: measure_type | |
| label: Measure Type | |
| type: entity | |
| required: true | |
| data: | |
| entity: measure_type | |
| title: title | |
| - value_key: expected_completion_date | |
| label: Expected Completion Date | |
| type: date | |
| - value_key: appointment_start | |
| label: Add Appointment Date | |
| type: datetime | |
| - value_key: appointment_type | |
| label: Appointment Type | |
| type: entity | |
| data: | |
| entity: appointment_type | |
| title: title | |
| - value_key: acquire_channel | |
| label: Acquire Channel | |
| type: entity | |
| required: true | |
| data: | |
| entity: acquire_channel | |
| title: title | |
| - value_key: num_required_entries | |
| pattern: '^\d+$' | |
| label: Number of required entries | |
| required: true | |
| query: | |
| /do( | |
| $_time_period := top(time_period.filter(study=$study&code='anytime')).id(), | |
| $_revision := max( | |
| measure_type_revision.filter( | |
| measure_type = $measure_type | |
| & !is_null(json) | |
| & exists(measure_type_revision_channel.acquire_channel = 'entry') | |
| ).revision | |
| ), | |
| $_title := measure_type[$measure_type].title, | |
| $_measure := insert( measure := | |
| { | |
| measure_type_revision := [[$measure_type].$_revision], | |
| individual := [$individual], | |
| study := [$study], | |
| data_entry_status := 'in-process' | |
| } | |
| ), | |
| $_appointment_type := if(is_null($appointment_type), 'home', $appointment_type), | |
| $_appointment := if ( | |
| !is_null($appointment_start) & | |
| !exists(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &start=$appointment_start&(status='scheduled'|status='rescheduled')), | |
| insert( appointment := | |
| { | |
| individual := [$individual], | |
| appointment_type := $_appointment_type, | |
| start := $appointment_start, | |
| duration := '1', | |
| staff := [$USER], | |
| requestor := [$USER], | |
| acceptance_status_by_staff := 'requested', | |
| status := 'scheduled' | |
| }), | |
| top(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &start=$appointment_start).id() | |
| ), | |
| $_todo := insert( todo := | |
| { | |
| individual := [$individual], | |
| study := [$study], | |
| expected_completion_date := $expected_completion_date, | |
| status := 'not-started', | |
| title := $_title, | |
| appointment := $_appointment, | |
| time_period := $_time_period | |
| } | |
| ), | |
| $_measure_todo_fulfillment := insert( measure_todo_fulfillment := | |
| { | |
| todo := $_todo, | |
| measure := $_measure, | |
| num_required_entries := $num_required_entries, | |
| acquire_channel := [$acquire_channel] | |
| } | |
| ) | |
| ) | |
| adhoc-consent-todo: | |
| type: make | |
| title: Add Consent Adhoc ToDo | |
| icon: plus | |
| width: 700 | |
| entity: todo | |
| submit_button: Submit | |
| value: | |
| individual: $individual | |
| fields: | |
| - value_key: study | |
| label: Study | |
| required: true | |
| - type: entity | |
| label: Consent Type | |
| value_key: consent_type | |
| required: true | |
| data: | |
| entity: consent_type | |
| title: title | |
| - value_key: expected_completion_date | |
| label: Expected Completion Date | |
| type: date | |
| - value_key: appointment_start | |
| label: Appointment Date | |
| type: datetime | |
| - value_key: appointment_type | |
| label: Appointment Type | |
| type: entity | |
| data: | |
| entity: appointment_type | |
| title: title | |
| query: | |
| /do( | |
| $_time_period := top(time_period.filter(study=$study&code='anytime')).id(), | |
| $_title := consent_type[$consent_type].title, | |
| $_consent := insert( consent := | |
| { | |
| individual := [$individual], | |
| consent_type := [$consent_type] | |
| } | |
| ), | |
| $_appointment_type := if(is_null($appointment_type), 'home', $appointment_type), | |
| $_appointment := if ( | |
| !is_null($appointment_start) & | |
| !exists(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &(status='scheduled'|status='rescheduled') | |
| &start=$appointment_start), | |
| insert( appointment := | |
| { | |
| individual := [$individual], | |
| appointment_type := $_appointment_type, | |
| start := $appointment_start, | |
| duration := '1', | |
| staff := [$USER], | |
| requestor := [$USER], | |
| acceptance_status_by_staff := 'requested', | |
| status := 'scheduled' | |
| }), | |
| top(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &start=$appointment_start).id() | |
| ), | |
| $_todo := insert( todo := | |
| { | |
| individual := [$individual], | |
| study := [$study], | |
| expected_completion_date := $expected_completion_date, | |
| status := 'not-started', | |
| title := $_title, | |
| appointment := $_appointment, | |
| time_period := $_time_period | |
| } | |
| ), | |
| $_consent_todo_fulfillment := insert( consent_todo_fulfillment := | |
| { | |
| todo := $_todo, | |
| consent := $_consent | |
| } | |
| ) | |
| ) | |
| adhoc-sample-todo: | |
| type: make | |
| title: Add Sample Adhoc ToDo | |
| icon: plus | |
| width: 700 | |
| entity: todo | |
| submit_button: Submit | |
| value: | |
| individual: $individual | |
| fields: | |
| - value_key: study | |
| label: Study | |
| required: true | |
| - type: entity | |
| label: Sample Type | |
| value_key: sample_type | |
| required: true | |
| data: | |
| entity: sample_type | |
| title: title | |
| - value_key: expected_completion_date | |
| label: Expected Completion Date | |
| type: date | |
| - value_key: appointment_start | |
| label: Appointment Date | |
| type: datetime | |
| - value_key: appointment_type | |
| label: Appointment Type | |
| type: entity | |
| data: | |
| entity: appointment_type | |
| title: title | |
| query: | |
| /do( | |
| $_time_period := top(time_period.filter(study=$study&code='anytime')).id(), | |
| $_title := sample_type[$sample_type].title, | |
| $_sample := insert( sample := | |
| { | |
| individual := [$individual], | |
| sample_type := [$sample_type] | |
| } | |
| ), | |
| $_appointment_type := if(is_null($appointment_type), 'home', $appointment_type), | |
| $_appointment := if ( | |
| !is_null($appointment_start) & | |
| !exists(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &(status='scheduled'|status='rescheduled') | |
| &start=$appointment_start), | |
| insert( appointment := | |
| { | |
| individual := [$individual], | |
| appointment_type := $_appointment_type, | |
| start := $appointment_start, | |
| duration := '1', | |
| staff := [$USER], | |
| requestor := [$USER], | |
| acceptance_status_by_staff := 'requested', | |
| status := 'scheduled' | |
| }), | |
| top(appointment?individual=$individual | |
| &appointment_type=$_appointment_type | |
| &start=$appointment_start).id() | |
| ), | |
| $_todo := insert( todo := | |
| { | |
| individual := [$individual], | |
| study := [$study], | |
| expected_completion_date := $expected_completion_date, | |
| status := 'not-started', | |
| title := $_title, | |
| appointment := $_appointment, | |
| time_period := $_time_period | |
| } | |
| ), | |
| $_sample_todo_fulfillment := insert( sample_todo_fulfillment := | |
| { | |
| todo := $_todo, | |
| sample := $_sample | |
| } | |
| ) | |
| ) | |
| ######################################### | |
| ## Sample actions of TodoWizard: | |
| ######################################### | |
| edit-tube: | |
| type: edit | |
| entity: tube | |
| width: 500 | |
| submit_button: Submit | |
| input: | |
| - tube: tube | |
| fields: | |
| - value_key: volume_amount | |
| label: Volume Amount | |
| required: true | |
| type: number | |
| - value_key: volume_unit | |
| label: Volume Unit | |
| required: true | |
| - value_key: concentration_amount | |
| label: Concentration Amount | |
| required: true | |
| type: number | |
| - value_key: concentration_unit | |
| label: Concentration Unit | |
| required: true | |
| - value_key: location_memo | |
| label: Location Memo | |
| type: note | |
| view-sample: | |
| title: View | |
| type: view | |
| width: 500 | |
| entity: sample | |
| input: | |
| - sample: sample | |
| fields: | |
| - value_key: code_text | |
| label: Sample Code | |
| - value_key: sample_type | |
| label: Sample Type | |
| type: calculation | |
| expression: sample_type.title | |
| - value_key: derived_from | |
| label: Derived From | |
| type: calculation | |
| expression: (derived_from.sample_type.title + ' - '+ derived_from.code_text) | |
| - value_key: remaining_volume_ml | |
| type: calculation | |
| label: Remaining Volume | |
| expression: if(exists(tube), str(sum(tube.volume_amount * switch(tube.volume_unit, | |
| null(), 1, | |
| 'ml', 1, | |
| 'ul', 0.001)) - | |
| sum(tube.tube_usage.used_volume_amount * switch(tube.tube_usage.used_volume_unit, | |
| null(), 1, | |
| 'ml', 1, | |
| 'ul', 0.001))) + ' (ml)', '') | |
| pick-tube: | |
| type: pick | |
| title: Sample Tubes | |
| entity: tube | |
| width: 700 | |
| input: | |
| - sample: sample | |
| mask: sample=$sample | |
| fields: | |
| - value_key: code | |
| label: Code | |
| width: 100 | |
| - value_key: volume_amount | |
| width: 100 | |
| label: Volume | |
| - value_key: volume_unit | |
| width: 100 | |
| label: Unit | |
| - value_key: concentration_amount | |
| label: Concentration | |
| - value_key: concentration_unit | |
| label: Unit | |
| - value_key: remaining_volume_ml | |
| type: calculation | |
| label: Remaining Vol. | |
| expression: | | |
| switch(volume_unit, | |
| null(), volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ml', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ul', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ml'|is_null(tube_usage.used_volume_unit), | |
| tube_usage.used_volume_amount*1000, | |
| tube_usage.used_volume_amount))) | |
| view-tube: | |
| title: View Tube | |
| type: view | |
| width: 500 | |
| entity: tube | |
| input: | |
| - tube: tube | |
| fields: | |
| - value_key: sample | |
| label: Sample | |
| - value_key: code | |
| label: Tube Code | |
| - value_key: volume_amount | |
| label: Volume | |
| - value_key: volume_unit | |
| label: Unit | |
| - value_key: concentration_amount | |
| label: Concentration | |
| - value_key: concentration_unit | |
| label: Unit | |
| - value_key: remaining_volume_ml | |
| type: calculation | |
| label: Remaining Volume | |
| expression: | | |
| str(switch(volume_unit, | |
| null(), volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ml', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ul', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ml'|is_null(tube_usage.used_volume_unit), | |
| tube_usage.used_volume_amount*1000, | |
| tube_usage.used_volume_amount)))) + ' (' + str(volume_unit) + ')' | |
| - value_key: location_memo | |
| label: Location | |
| use-sample: | |
| type: make | |
| title: Use Sample | |
| entity: tube_usage | |
| width: 500 | |
| submit_button: Submit | |
| value: | |
| tube: $tube | |
| fields: | |
| - value_key: tube | |
| label: Tube | |
| read_only: true | |
| type: entity | |
| data: | |
| entity: tube | |
| title: | | |
| (code + ' (' + str(switch(volume_unit, | |
| null(), volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ml', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ul', | |
| tube_usage.used_volume_amount*0.001, | |
| tube_usage.used_volume_amount)), | |
| 'ul', volume_amount - sum( | |
| if(tube_usage.used_volume_unit = 'ml'|is_null(tube_usage.used_volume_unit), | |
| tube_usage.used_volume_amount*1000, | |
| tube_usage.used_volume_amount)))) + ' ' + str(volume_unit) + ' remaining)') | |
| - value_key: used_volume_amount | |
| label: Volume Used | |
| required: true | |
| - value_key: used_volume_unit | |
| label: Volume Unit | |
| required: true | |
| - value_key: user | |
| label: Requested By | |
| type: entity | |
| data: | |
| entity: user | |
| title: remote_user | |
| required: true | |
| - value_key: date_requested | |
| label: Requested On | |
| - value_key: note | |
| label: Usage Note | |
| type: note | |
| edit-sample: | |
| title: Edit Sample | |
| type: edit | |
| entity: sample | |
| width: 500 | |
| submit_button: Complete | |
| input: | |
| - sample: sample | |
| fields: | |
| - value_key: code_text | |
| label: Code | |
| required: true | |
| - value_key: sample_type | |
| label: Type | |
| required: true | |
| - value_key: derived_from | |
| label: Derived From | |
| type: entity | |
| data: | |
| entity: sample | |
| title: (sample_type.title + ' - '+ code_text) | |
| add-tube: | |
| type: make | |
| title: Add Tube | |
| entity: tube | |
| width: 600 | |
| value: | |
| sample: $sample | |
| input: | |
| - sample: sample | |
| fields: | |
| - value_key: volume_amount | |
| label: Volume Amount | |
| required: true | |
| - value_key: volume_unit | |
| label: Volume Unit | |
| required: true | |
| - value_key: concentration_amount | |
| label: Concentration Amount | |
| required: true | |
| - value_key: concentration_unit | |
| label: Concentration Unit | |
| required: true | |
| - value_key: location_memo | |
| label: Location Memo | |
| type: note | |
| pick-used-tube: | |
| type: pick | |
| title: Tubes Usage | |
| entity: tube_usage | |
| input: | |
| - sample: sample | |
| mask: tube.sample=$sample | |
| fields: | |
| - value_key: code | |
| label: Tube | |
| - value_key: used_volume_amount | |
| label: Used Vol. Amount | |
| - value_key: used_volume_unit | |
| label: Used Vol. Unit | |
| - value_key: date_requested | |
| label: Requested On | |
| view-used-tube: | |
| type: view | |
| title: View | |
| entity: tube_usage | |
| input: | |
| - tube_usage: tube_usage | |
| fields: | |
| - value_key: sample | |
| label: Sample | |
| type: calculation | |
| expression: tube.sample.id() | |
| - value_key: code | |
| label: Tube | |
| - value_key: user | |
| label: Requested By | |
| - value_key: used_volume_amount | |
| label: Used Volume Amount | |
| - value_key: used_volume_unit | |
| label: Used Volume Unit | |
| - value_key: date_requested | |
| label: Requested On | |
| - value_key: note | |
| label: Usage Note | |
| pick-tube-usage: | |
| type: pick | |
| title: Tube Usage | |
| entity: tube_usage | |
| input: | |
| - tube: tube | |
| mask: tube=$tube | |
| fields: | |
| - value_key: code | |
| label: Tube | |
| - value_key: used_volume_amount | |
| label: Used Vol. Amount | |
| - value_key: used_volume_unit | |
| label: Used Vol. Unit | |
| - value_key: date_requested | |
| label: Requested On | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment