Created
October 12, 2020 11:28
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| # MiSeq | |
| bcl2fastq -R . -r 10 -p 10 -w 10 \ | |
| --fastq-compression-level 9 \ | |
| --barcode-mismatches 2 \ | |
| -l NONE -o fastq_files \ | |
| --sample-sheet SampleSheet.csv | |
| # Nextseq | |
| bcl2fastq -R . --no-lane-splitting \ | |
| -r 10 -p 10 -w 10 \ | |
| --fastq-compression-level 9 -l NONE \ | |
| --minimum-trimmed-read-length 70 \ | |
| -o fastq_files --sample-sheet SampleSheet.csv |
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