Alexander Bender ATpoint

## README.md

      
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                lindenb
                / README.md
            
            
              Last active
              February 15, 2023 21:21
            
              
                Biostar Images vs text carbon planet climate
              
          
    Don't upload images when you can just copy and paste the text.
The following PNG image has a weight of 357,000 bytes

while the text containing the very same information is about only 1,109 bytes, hence a much lower carbon footprint.
##sequence-region JAFJXZ010000052.1 1 250


## query_ensembl.py
#!/usr/bin/python3

import sys
import os
import tempfile
import gzip
import argparse
from ftplib import FTP


## git_new_local_branch.md

      
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                nanusdad
                / git_new_local_branch.md
            
            
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              February 7, 2024 01:37
            
              
                Git - create new local branch push to GitHub
              
          
From - https://github.com/Kunena/Kunena-Forum/wiki/Create-a-new-branch-with-git-and-manage-branches

git checkout -b [name_of_your_new_branch]

Push the branch on github :

git push origin [name_of_your_new_branch]

When you want to commit something in your branch, be sure to be in your branch.


## deinterleave_fastq.sh
#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
#
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
#
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
#
	#!/usr/bin/python3

	import sys
	import os
	import tempfile
	import gzip
	import argparse
	from ftplib import FTP
	#!/bin/bash
	# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
	#
	# Deinterleaves a FASTQ file of paired reads into two FASTQ
	# files specified on the command line. Optionally GZip compresses the output
	# FASTQ files using pigz if the 3rd command line argument is the word "compress"
	#
	# Can deinterleave 100 million paired reads (200 million total
	# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
	#