gistfile1.txt

handler1.log:
galaxy.jobs.runners DEBUG 2015-07-29 11:48:50,904 (46) command is: 
python /Warehouse/Users/dbouchard/galaxy/tools/irida_import/irida_import.py --json_parameter_file "/Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_153.dat" --log-file /Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_152.dat; return_code=$?; python /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/set_metadata_16QCox.py /Warehouse/Users/dbouchard/galaxy/database/tmp/tmpBvhI_V /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/galaxy.json /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_in_HistoryDatasetAssociation_146_rnM5kq,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_kwds_HistoryDatasetAssociation_146_Bbe6iB,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_out_HistoryDatasetAssociation_146_jaXzKo,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_results_HistoryDatasetAssociation_146_8UQvbq,/Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_152.dat,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_override_HistoryDatasetAssociation_146_lSnir_ /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_in_HistoryDatasetAssociation_147_SgXole,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_kwds_HistoryDatasetAssociation_147_WLOpsT,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_out_HistoryDatasetAssociation_147_KcdF_k,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_results_HistoryDatasetAssociation_147_WEKSop,/Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_153.dat,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_override_HistoryDatasetAssociation_147_pVh37z; sh -c "exit $return_code"