Daniel Airistotal
Airistotal
/ DocumentModificationDisplay.js
Created
November 26, 2020 20:22
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| // ==UserScript== | |
| // @name Document Modification Display | |
| // @namespace http://tampermonkey.net/ | |
| // @version 0.3 | |
| // @updateURL https://raw.githubusercontent.com/Airistotal/UserScripts/main/Scripts/DocumentModificationDisplay.js | |
| // @downloadURL https://raw.githubusercontent.com/Airistotal/UserScripts/main/Scripts/DocumentModificationDisplay.js | |
| // @description Shows when the document was last modified | |
| // @author You | |
| // @match *://*/* | |
| // @grant none |
Airistotal
/ gist:980acbf6a1e72c3a928c
Created
July 29, 2015 19:38
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| handler1.log: | |
| galaxy.jobs.runners DEBUG 2015-07-29 11:48:50,904 (46) command is: | |
| python /Warehouse/Users/dbouchard/galaxy/tools/irida_import/irida_import.py --json_parameter_file "/Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_153.dat" --log-file /Warehouse/Users/dbouchard/galaxy/database/files/000/dataset_152.dat; return_code=$?; python /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/set_metadata_16QCox.py /Warehouse/Users/dbouchard/galaxy/database/tmp/tmpBvhI_V /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/galaxy.json /Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_in_HistoryDatasetAssociation_146_rnM5kq,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_kwds_HistoryDatasetAssociation_146_Bbe6iB,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/000/46/metadata_out_HistoryDatasetAssociation_146_jaXzKo,/Warehouse/Users/dbouchard/galaxy/database/job_working_directory/00 |
Airistotal
/ gist:0d2e739174f4126f464a
Created
July 16, 2015 14:54
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| 09:54 $ ./node_modules/.bin/grunt style | |
| Running "sprite:history-buttons" (sprite) task | |
| Fatal error: Cannot define property:4, object is not extensible. |
Airistotal
/ gist:fe1fbc8f9561b13d97c7
Created
June 18, 2015 20:21
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| <?xml version="1.0"?> | |
| <!-- If job_metrics.xml exists, this file will define the default job metric | |
| plugin used for all jobs. Individual job_conf.xml destinations can | |
| disable metric collection by setting metrics="off" on that destination. | |
| The metrics attribute on destination definition elements can also be | |
| a path - in which case that XML metrics file will be loaded and used for | |
| that destination. Finally, the destination element may contain a job_metrics | |
| child element (with all options defined below) to define job metrics in an | |
| embedded manner directly in the job_conf.xml file. | |
| --> |
Airistotal
/ gist:e3cd90a8ba3952453241
Created
May 13, 2015 14:36
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| from galaxy.jobs import JobDestination | |
| import os | |
| import logging | |
| def space_allocation(job): | |
| """Allocate dynamic space""" | |
| logging.basicConfig(filename='fastqc.log', level=logging.DEBUG) | |
| logging.debug("I'm working...") | |
| for da in job.input_datasets: |
Airistotal
/ gist:6ad916e68601536badcb
Created
May 12, 2015 19:01
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| Traceback (most recent call last): | |
| File "/Warehouse/Users/dbouchard/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/e28c965eeed4/fastqc/rgFastQC.py", line 204, in <module> | |
| assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable | |
| AssertionError: ##rgFastQC.py error - cannot find executable /fastqc |
Airistotal
/ gist:498ee2c1be013095d516
Created
May 12, 2015 18:46
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| /Warehouse/Users/dbouchard/galaxy/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1: RuntimeWarning: __builtin__.file size changed, may indicate binary incompatibility | |
| from csamtools import * | |
| /Warehouse/Users/dbouchard/galaxy/eggs/pysam-0.4.2_kanwei_b10f6e722e9a-py2.6-linux-x86_64-ucs4.egg/pysam/__init__.py:1: RuntimeWarning: __builtin__.file size changed, may indicate binary incompatibility | |
| from csamtools import * |