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September 22, 2016 15:10
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Install the APS/NSLS-II hybrid stack
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#!/usr/bin/env bash | |
# Start in the home dir | |
cd | |
# Need to install/start mongo | |
# install miniconda | |
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O ~/miniconda.sh | |
chmod +x miniconda.sh | |
./miniconda.sh -b -p ~/mc | |
# add nice things to bashrc | |
echo 'export PATH=~/mc/bin:$PATH' >> ~/.bashrc | |
echo 'alias sa="source activate"' >> ~/.bashrc | |
echo 'alias sd="source deactivate"' >> ~/.bashrc | |
echo 'alias psd="python setup.py develop"' >> ~/.bashrc | |
export PATH=~/mc/bin:$PATH | |
alias sa="source activate" | |
alias sd="source deactivate" | |
alias psd="python setup.py develop" | |
# add a condarc | |
wget https://gist.githubusercontent.com/CJ-Wright/a57600995e4fcf55ad0d4c57589b8b94/raw/a7dabd53cf5fff98fc8d8b15a6804cc9f762adae/.condarc -O ~/.condarc | |
# add configurations for FS and MDS | |
mkdir -p ~/.config/metadatastore | |
echo 'host: localhost' > ~/.config/metadatastore/connection.yml | |
echo 'database: metadatastore-experimental-data' >> ~/.config/metadatastore/connection.yml | |
echo 'port: 27017' >> ~/.config/metadatastore/connection.yml | |
echo 'timezone: US/Eastern' >> ~/.config/metadatastore/connection.yml | |
mkdir -p ~/.config/filestore | |
echo 'host: localhost' > ~/.config/filestore/connection.yml | |
echo 'database: filestore-experimental-data' >> ~/.config/filestore/connection.yml | |
echo 'port: 27017' >> ~/.config/filestore/connection.yml | |
# Conda install all the things | |
conda update conda --yes | |
conda create -n dp2 python=3 pip nose xraylib numpy scipy six numba mkl matplotlib accelerate mpi4py psutil future scikit-beam databroker datamuxer six pandas coverage | |
sa dp_prod2 | |
pip install magic-wormhole | |
mkdir -p ~/other_src | |
cd ~/other_src | |
git clone https://github.com/CJ-Wright/sidewinder-spec.git | |
cd sidewinder-spec | |
psd | |
cd .. | |
git clone https://github.com/CJ-Wright/xpd_workflow.git | |
cd xpd_workflow | |
psd |
Note that this will need to be updated with the new pyFAI, we should just install it from source.
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Note that you need to have installed mongodb first and get it running.