Install the APS/NSLS-II hybrid stack

stack_installer.sh

#!/usr/bin/env bash
# Start in the home dir
cd
# Need to install/start mongo

# install miniconda
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O ~/miniconda.sh
chmod +x miniconda.sh
./miniconda.sh -b -p ~/mc

# add nice things to bashrc
echo 'export PATH=~/mc/bin:$PATH' >> ~/.bashrc
echo 'alias sa="source activate"' >> ~/.bashrc
echo 'alias sd="source deactivate"' >> ~/.bashrc
echo 'alias psd="python setup.py develop"' >> ~/.bashrc

export PATH=~/mc/bin:$PATH
alias sa="source activate"
alias sd="source deactivate"
alias psd="python setup.py develop"

# add a condarc
wget https://gist.githubusercontent.com/CJ-Wright/a57600995e4fcf55ad0d4c57589b8b94/raw/a7dabd53cf5fff98fc8d8b15a6804cc9f762adae/.condarc -O ~/.condarc

# add configurations for FS and MDS
mkdir -p ~/.config/metadatastore
echo 'host: localhost' > ~/.config/metadatastore/connection.yml
echo 'database: metadatastore-experimental-data' >> ~/.config/metadatastore/connection.yml
echo 'port: 27017' >> ~/.config/metadatastore/connection.yml
echo 'timezone: US/Eastern' >> ~/.config/metadatastore/connection.yml

mkdir -p ~/.config/filestore
echo 'host: localhost' > ~/.config/filestore/connection.yml
echo 'database: filestore-experimental-data' >> ~/.config/filestore/connection.yml
echo 'port: 27017' >> ~/.config/filestore/connection.yml

# Conda install all the things
conda update conda --yes

conda create -n dp2 python=3 pip nose xraylib numpy scipy six numba mkl matplotlib accelerate mpi4py psutil future scikit-beam databroker datamuxer six pandas coverage

sa dp_prod2
pip install magic-wormhole

mkdir -p ~/other_src
cd ~/other_src
git clone  https://github.com/CJ-Wright/sidewinder-spec.git
cd sidewinder-spec
psd
cd ..
git clone https://github.com/CJ-Wright/xpd_workflow.git
cd xpd_workflow
psd

Note that you need to have installed mongodb first and get it running.

Note that this will need to be updated with the new pyFAI, we should just install it from source.