Chris Trivedi ChrisTrivedi

## CGP-Pipeline.md

      
        
          
            
              
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                GDKO
                / CGP-Pipeline.md
            
            
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              April 2, 2020 16:42
            
              
                CGP Pipeline
              
          
        
      
        
  
      
    Preface

This is my recommended pipeline for assembly and annotation of small eukaryotic genomes (50 - 500 Mb).
All small scripts are available at CGP-scripts. For the programs a link is provided.
Please cite if you found the pipeline useful!