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Georgios Koutsovoulos GDKO

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GDKO / axelrod_pso.md
Last active July 14, 2017 21:03
Optimising the LookerUp strategy for an Iterated Prisoner's Dilemma tournament
View axelrod_pso.md

Preface

I would suggest before continuing to read the excellent blog post by Martin Jones.

The LookerUp strategy

The LookerUp strategy uses a 64-key lookup table (keys are 3-tuples consisting of the opponent's starting actions, the opponent's recent actions, and our recent action) to decide whether to cooperate (C) or defect (D). The actions for each key were generated using an evolutionary algorithm.

The idea

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GDKO / CGP-Pipeline.md
Last active April 2, 2020 16:42
CGP Pipeline
View CGP-Pipeline.md

Preface

This is my recommended pipeline for assembly and annotation of small eukaryotic genomes (50 - 500 Mb).

All small scripts are available at CGP-scripts. For the programs a link is provided.

Please cite if you found the pipeline useful!

DOI

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GDKO / Euk-Ecoli.md
Last active March 1, 2016 11:26
Eukaryotic gene prediction on a bacterial genome
View Euk-Ecoli.md

The goal is to check whether abinitio gene finders with eukaryotic parameters will predict genes with "real" introns in bacterial genomes.

Download E. coli from NCBI

http://www.ncbi.nlm.nih.gov/nuccore/296142109

Rename Header to >E_coli

Run CEGMA