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@CoryKornowicz
CoryKornowicz / neb.py
Created March 30, 2022 21:23 — forked from rmcgibbo/neb.py
Nudged Elastic Band in Python
from __future__ import division
import numpy as np
import IPython as ip
import matplotlib.pyplot as pp
import warnings
from collections import namedtuple
import scipy.optimize
#symbolic algebra
import theano
@CoryKornowicz
CoryKornowicz / KdtodG.py
Last active May 7, 2023 12:39
Kd to deltaG. For comparing Binding Affinity to expected calculated Kd
import math
# deltaG = -RT*ln(Kd)
def Kd_to_dG(Kd):
Kd = float(Kd)
# R T
dG = -0.0019872036*298*math.log(Kd)
print('{} Kcal/mol'.format(round(dG, 2)))
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