Emilio García Morán EmilioGarciaMoran
EmilioGarciaMoran
/ efetch.sh
Created
April 8, 2020 20:01
bash oneliner to fetch genomes in fasta format from Genbank
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| #!/bin/bash | |
| epost -input corona/GenBankGenomes.lst |efetch -db nucleotide -format fasta>corona/GenBankGenomes.fasta | |
| #GenBankGenomes.lst is a text file with the accession numbers for every genome (one per line). It is | |
| #easy to build from Entrez-NCBI web interface |