Created
August 1, 2018 13:24
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A = sprand(65535, 65500, 1e-5) | |
v = rand(65500) | |
function foo(A, v) | |
b = zeros(size(A,1)) | |
rows = rowvals(A) | |
vals = nonzeros(A) | |
m, n = size(A) | |
for i = 1:n | |
@inbounds @simd for j in nzrange(A, i) | |
row = rows[j] | |
val = vals[j] | |
b[row] += val * v[i] | |
end | |
end | |
b | |
end | |
# COO? | |
idxcoo = Tuple{Int,Int}[] | |
valcoo = Float64[] | |
rows = rowvals(A) | |
vals = nonzeros(A) | |
m, n = size(A) | |
for i = 1:n | |
for j in nzrange(A, i) | |
row = rows[j] | |
val = vals[j] | |
push!(idxcoo, (row,i)) | |
push!(valcoo, val) | |
end | |
end | |
function bar(idxcoo, valcoo, v, N) | |
b = zeros(N) | |
@inbounds @simd for n in eachindex(idxcoo) | |
i, j = idxcoo[n] | |
val = valcoo[n] | |
b[i] += val * v[j] | |
end | |
b | |
end | |
using BenchmarkTools | |
@benchmark foo($A, $v) # -> 687 | |
@benchmark bar($idxcoo, $valcoo, $v, size(A,1)) # -> 193 | |
foo2() = [foo(A,v) for i = 1:1000] | |
bar2() = [bar(idxcoo, valcoo, v, size(A,1)) for i = 1:1000] | |
foo(A, v) == bar(idxcoo, valcoo, v, size(A,1)) | |
using Profile | |
Profile.clear() | |
@profiler foo2() | |
Profile.clear() | |
@profiler bar2() |
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