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JohnGriffiths / looking_for_anterior_cingulate_cortex_in_tvb_connectivities.ipynb
Created October 11, 2018 22:00
looking_for_anterior_cingulate_cortex_in_tvb_connectivities.ipynb
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JohnGriffiths / tempfile.md
Created August 6, 2018 17:23

tempfile

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JohnGriffiths / mixture_distributions_in_sympy.ipynb
Last active April 4, 2018 02:37
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JohnGriffiths / README.md
Last active September 23, 2016 13:19

Dipy hcp dsi reconstruction error

====================================

I'm getting an error with dipy DSI reconstruction on HCP WU-MINN data.

It's a bit of a mystery as I've definitely got successful reconstructions using dipy with code very similar to this. But now I am getting the error below every time.

All the files are included in this gist to reproduce the error, apart from the DWI data (too big); that was simply data.nii.gz from subject 100307.

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JohnGriffiths / utils.py
Created April 1, 2016 14:29 — forked from maedoc/utils.py
from tvb.simulator.lab import *
import threading
import numpy
import time
import sys
from matplotlib.tri import Triangulation
from matplotlib import pyplot as plt
class SimThread(threading.Thread):
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JohnGriffiths / 'getyourboton_code
Last active August 29, 2015 14:09
Get your bot on code
(gist naming file; ignore)
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JohnGriffiths / 'tvb-robot
Last active August 29, 2015 14:09
tvb-robot - controlling a bot with the virtual brain platform
(gist naming file. ignore)
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JohnGriffiths / ReportingBayesFactors.ipynb
Created April 7, 2014 13:02
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JohnGriffiths / Philosophy_Of_Bayes
Last active August 29, 2015 13:57
Discussions and furtherance of understanding of Bayesian shizzle ma nizzle. Chip in by all means; but please do not judge.
(naming file with starting whitespace to fool github gist so I can add more files to this repo without random name changes)
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JohnGriffiths / making funky brain images with paraview
Last active August 29, 2015 13:57
Documents some useful tips for making nice brain pics with paraview. (Note: have a separate, more comprehensive gist on this that includes paraview state files. Must remember to add them here at some point...)
(gist title doc)
Maybe one day github will sort out the silly naming behaviour of gists,
which randomly default the name of included files in an unhelpful manner.
In the meantime, a simple workaround is to include a file this one with
a sensible, descriptive name for the gist, but with a blank space as the
first character.