gistfile1.txt

<?xml version="1.0" ?><job_conf>
    <plugins workers="4">
        <plugin id="slurm" load="galaxy.jobs.runners.slurm:SlurmJobRunner" type="runner"/>
        <plugin id="pulsar_rest" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner" type="runner"/>
        <plugin id="local" load="galaxy.jobs.runners.local:LocalJobRunner" type="runner" workers="10"/>
    </plugins>

    <handlers default="handlers"><handler id="handler0" tags="handlers"><plugin id="slurm"/></handler><handler id="handler1" tags="handlers"><plugin id="slurm"/></handler><handler id="handler2" tags="handlers"><plugin id="slurm"/></handler></handlers>

    <destinations default="slurm_cluster">
        <destination id="slurm_cluster" runner="slurm"/>
        <destination id="slurm_cluster_cpu4" runner="slurm">
            <param id="nativeSpecification">--nodes=1 --ntasks=4</param>
        </destination>
	<destination id="slurm_cluster_cpu15" runner="slurm">
	    <param id="nativeSpecification">--nodes=1 --ntasks=15</param>
        </destination>
        <destination id="slurm_cluster_cpu30" runner="slurm">
            <param id="nativeSpecification">--nodes=1 --ntasks=30</param>
	</destination>
        <destination id="pulsar_server" runner="pulsar_rest">
            <param id="url">http://pulsar_server_ip:pulsar_server_port/</param>
        </destination>
        <destination id="local_runner" runner="local"/>
    </destinations>

    <tools>
        <!-- <tool id="upload1" destination="local_runner" /> -->
        <!-- <tool id="random_lines1" destination="pulsar_server" /> -->
        <tool destination="slurm_cluster_cpu4" id="bowtie"/>
        <tool destination="slurm_cluster_cpu15" id="bowtie2"/>
        <tool destination="slurm_cluster_cpu4" id="sailfish"/>
        <tool destination="slurm_cluster_cpu4" id="cuffmerge"/>
        <tool destination="slurm_cluster_cpu4" id="cufflinks"/>
        <tool destination="slurm_cluster_cpu4" id="currnorm"/>
        <tool destination="slurm_cluster_cpu15" id="bwa"/>
        <tool destination="slurm_cluster_cpu4" id="tophat_fusion"/>
        <tool destination="slurm_cluster_cpu4" id="cuffquant"/>
        <tool destination="slurm_cluster_cpu4" id="cuffdiff"/>
        <tool destination="slurm_cluster_cpu15" id="bowtie2"/>
        <tool destination="slurm_cluster_cpu4" id="trimmomatic"/>
        <tool destination="slurm_cluster_cpu4" id="hisat2"/>
        <tool destination="slurm_cluster_cpu4" id="pear"/>
        <tool destination="slurm_cluster_cpu4" id="diamond"/>
        <tool destination="slurm_cluster_cpu4" id="spades"/>
	<tool destination="slurm_cluster_cpu15" id="kraken"/>
        <tool destination="slurm_cluster_cpu15" id="hydra"/>
	<tool destination="slurm_cluster_cpu30" id="freebayes"/>
        <tool destination="slurm_cluster_cpu30" id="snippy"/>
</tools>
</job_conf>