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Micropathology/gist:13a127540f4577184976a6fb505a31b6

Created March 17, 2018 12:54
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Install of refseqmasher
Raw
gistfile1.txt
Fetching package metadata .................
Solving package specifications:
PackageNotFoundError: Packages missing in current channels:
- refseq_masher 0.1.1* -> mash >=2.0 -> capnproto
- refseq_masher 0.1.1* -> mash >=2.0 -> gsl 1.16*
We have searched for the packages in the following channels:
- https://conda.anaconda.org/r/linux-64
- https://conda.anaconda.org/r/noarch
- https://conda.anaconda.org/bioconda/linux-64
- https://conda.anaconda.org/bioconda/noarch
- https://conda.anaconda.org/iuc/linux-64
- https://conda.anaconda.org/iuc/noarch
- https://repo.continuum.io/pkgs/main/linux-64
- https://repo.continuum.io/pkgs/main/noarch
- https://repo.continuum.io/pkgs/free/linux-64
- https://repo.continuum.io/pkgs/free/noarch
- https://repo.continuum.io/pkgs/r/linux-64
- https://repo.continuum.io/pkgs/r/noarch
- https://repo.continuum.io/pkgs/pro/linux-64
- https://repo.continuum.io/pkgs/pro/noarch
galaxy.tools.deps.resolvers.conda DEBUG 2018-03-17 12:40:02,991 Removing failed conda install of [CondaTarget[refseq_masher,version=0.1.1]]
galaxy.tools.deps.conda_util DEBUG 2018-03-17 12:40:02,992 Executing command: /mnt/galaxy/tool_dependencies/_conda/bin/conda create -y --override-channels --channel r --channel bioconda --channel iuc --name __refseq_masher@0.1.1 refseq_masher=0.1.1
86.2.232.78 - - [17/Mar/2018:12:40:05 +0000] "GET /api/histories/8317ee2b0d0f62d9/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-17T12%3A40%3A01.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Frefseq_masher%2Frefseq_masher_contains%2F0.1.1&version=0.1.1&__identifer=jswpw4qa9a" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
86.2.232.78 - - [17/Mar/2018:12:40:05 +0000] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0/build?version=3.9.0&__identifer=ptqzy6aw27&tool_version=3.9.0 HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
86.2.232.78 - - [17/Mar/2018:12:40:05 +0000] "GET /api/webhooks/tool-menu/all HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
86.2.232.78 - - [17/Mar/2018:12:40:06 +0000] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.9.0/citations HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
Fetching package metadata .................
Solving package specifications:
PackageNotFoundError: Packages missing in current channels:
- refseq_masher 0.1.1* -> mash >=2.0 -> capnproto
- refseq_masher 0.1.1* -> mash >=2.0 -> gsl 1.16*
We have searched for the packages in the following channels:
- https://conda.anaconda.org/r/linux-64
- https://conda.anaconda.org/r/noarch
- https://conda.anaconda.org/bioconda/linux-64
- https://conda.anaconda.org/bioconda/noarch
- https://conda.anaconda.org/iuc/linux-64
- https://conda.anaconda.org/iuc/noarch
- https://repo.continuum.io/pkgs/main/linux-64
- https://repo.continuum.io/pkgs/main/noarch
- https://repo.continuum.io/pkgs/free/linux-64
- https://repo.continuum.io/pkgs/free/noarch
- https://repo.continuum.io/pkgs/r/linux-64
- https://repo.continuum.io/pkgs/r/noarch
- https://repo.continuum.io/pkgs/pro/linux-64
- https://repo.continuum.io/pkgs/pro/noarch
galaxy.tools.deps.resolvers.conda DEBUG 2018-03-17 12:40:08,535 Removing failed conda install of refseq_masher, version '0.1.1'
galaxy.tools.deps.conda_util DEBUG 2018-03-17 12:40:08,536 Executing command: /mnt/galaxy/tool_dependencies/_conda/bin/conda create -y --override-channels --channel r --channel bioconda --channel iuc --name __refseq_masher@_uv_ refseq_masher
86.2.232.78 - - [17/Mar/2018:12:40:09 +0000] "GET /api/histories/8317ee2b0d0f62d9/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-17T12%3A40%3A05.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
86.2.232.78 - - [17/Mar/2018:12:40:13 +0000] "GET /api/histories/8317ee2b0d0f62d9/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-17T12%3A40%3A09.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
Fetching package metadata .................
Solving package specifications: .
UnsatisfiableError: The following specifications were found to be in conflict:
- python 2.7*
- refseq_masher -> python 3.5*
Use "conda info " to see the dependencies for each package.
galaxy.tools.deps.resolvers.conda DEBUG 2018-03-17 12:40:17,177 Removing failed conda install of [CondaTarget[refseq_masher,unversioned]]
galaxy.tools.deps.conda_util DEBUG 2018-03-17 12:40:17,177 Executing command: /mnt/galaxy/tool_dependencies/_conda/bin/conda create -y --override-channels --channel r --channel bioconda --channel iuc --name __refseq_masher@_uv_ refseq_masher
86.2.232.78 - - [17/Mar/2018:12:40:18 +0000] "GET /api/histories/8317ee2b0d0f62d9/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-17T12%3A40%3A14.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
86.2.232.78 - - [17/Mar/2018:12:40:22 +0000] "GET /api/histories/8317ee2b0d0f62d9/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-17T12%3A40%3A18.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fnml%2Fmetaspades%2Fmetaspades%2F3.9.0&version=3.9.0&__identifer=ptqzy6aw27" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/65.0.3325.146 Safari/537.36"
Fetching package metadata .................
Solving package specifications: .
UnsatisfiableError: The following specifications were found to be in conflict:
- python 2.7*
- refseq_masher -> python 3.5*
Use "conda info " to see the dependencies for each package.
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