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Micropathology/gist:57318e070a671f84dfcd3146b9186a45

Created March 20, 2018 15:50
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Galaxy log post 4.4 conda
Raw
gistfile1.txt
CloudMan from Galaxy
Admin | Report bugs | Wiki | Screencast
Only up to the most recent 200 lines of the file (/mnt/galaxy/galaxy-app/main.log) are shown. Show all | Show less | Show more | Back to admin view
galaxy.tools.actions INFO 2018-03-20 15:38:48,061 Handled output named out_fna for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (16.605 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,078 Handled output named out_faa for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (17.159 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,102 Handled output named out_ffn for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (23.389 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,117 Handled output named out_sqn for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (15.481 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,136 Handled output named out_fsa for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (18.391 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,150 Handled output named out_tbl for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (14.054 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,167 Handled output named out_err for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (17.291 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,182 Handled output named out_txt for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (14.944 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,199 Handled output named out_log for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 (16.144 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,209 Added output datasets to history (10.694 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,223 Verified access to datasets for Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0] (6.456 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,225 Setup for job Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0] complete, ready to flush (15.248 ms)
galaxy.tools.actions INFO 2018-03-20 15:38:48,323 Flushed transaction for job Job[id=5445,tool_id=toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0] (97.996 ms)
galaxy.tools.execute DEBUG 2018-03-20 15:38:48,323 Tool [toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0] created job [5445] (347.046 ms)
galaxy.tools.execute DEBUG 2018-03-20 15:38:48,342 Executed 1 job(s) for tool toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 request: (379.269 ms)
94.125.130.125 - - [20/Mar/2018:15:38:47 +0000] "POST /api/tools HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:48 +0000] "GET /api/webhooks/tool HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:48 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A42%3A34.173Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
galaxy.jobs DEBUG 2018-03-20 15:38:48,601 (5445) Working directory for job is: /mnt/galaxy/tmp/job_working_directory/005/5445
galaxy.jobs.handler DEBUG 2018-03-20 15:38:48,606 (5445) Dispatching to slurm runner
galaxy.jobs DEBUG 2018-03-20 15:38:48,639 (5445) Persisting job destination (destination id: slurm_cluster)
galaxy.jobs.runners DEBUG 2018-03-20 15:38:48,651 Job [5445] queued (45.013 ms)
galaxy.jobs.handler INFO 2018-03-20 15:38:48,671 (5445) Job dispatched
94.125.130.125 - - [20/Mar/2018:15:38:48 +0000] "GET /api/histories/be8c8ac3dbd1dd54?keys=size%2Cnon_ready_jobs%2Ccontents_active%2Chid_counter HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
galaxy.tools.deps DEBUG 2018-03-20 15:38:49,224 Using dependency prokka version 1.12 of type conda
galaxy.jobs.command_factory INFO 2018-03-20 15:38:49,246 Built script [/mnt/galaxy/tmp/job_working_directory/005/5445/tool_script.sh] for tool command [[ "$CONDA_DEFAULT_ENV" = "/mnt/galaxy/tool_dependencies/_conda/envs/__prokka@1.12" ] ||
MAX_TRIES=3
COUNT=0
while [ $COUNT -lt $MAX_TRIES ]; do
. /mnt/galaxy/tool_dependencies/_conda/bin/activate '/mnt/galaxy/tool_dependencies/_conda/envs/__prokka@1.12' > conda_activate.log 2>&1
if [ $? -eq 0 ];then
break
else
let COUNT=COUNT+1
if [ $COUNT -eq $MAX_TRIES ];then
echo "Failed to activate conda environment! Error was:"
cat conda_activate.log
exit 1
fi
sleep 10s
fi
done ; prokka --version > /mnt/galaxy/tmp/GALAXY_VERSION_STRING_5445 2>&1; prokka --cpus ${GALAXY_SLOTS:-8} --quiet --outdir outdir --prefix prokka --locustag 'PROKKA' --increment 1 --gffver 3 --mincontig 200 --kingdom Bacteria --gcode 11 --evalue 1e-06 /mnt/galaxy/files/008/dataset_8176.dat]
galaxy.tools.deps DEBUG 2018-03-20 15:38:50,087 Using dependency samtools version None of type conda
galaxy.tools.deps DEBUG 2018-03-20 15:38:50,087 Using dependency bcftools version 1.5 of type conda
galaxy.jobs.runners DEBUG 2018-03-20 15:38:50,092 (5445) command is: rm -rf working; mkdir -p working; cd working; /mnt/galaxy/tmp/job_working_directory/005/5445/tool_script.sh; return_code=$?; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.log ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.log /mnt/galaxy/files/008/dataset_8298.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.txt ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.txt /mnt/galaxy/files/008/dataset_8297.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.err ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.err /mnt/galaxy/files/008/dataset_8296.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.tbl ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.tbl /mnt/galaxy/files/008/dataset_8295.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.fsa ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.fsa /mnt/galaxy/files/008/dataset_8294.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.sqn ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.sqn /mnt/galaxy/files/008/dataset_8293.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.ffn ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.ffn /mnt/galaxy/files/008/dataset_8292.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.faa ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.faa /mnt/galaxy/files/008/dataset_8291.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.fna ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.fna /mnt/galaxy/files/008/dataset_8290.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.gbk ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.gbk /mnt/galaxy/files/008/dataset_8289.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.gff ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5445/working/outdir/prokka.gff /mnt/galaxy/files/008/dataset_8288.dat ; fi; cd '/mnt/galaxy/tmp/job_working_directory/005/5445';
[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True
export PATH=$PATH:'/mnt/galaxy/tool_dependencies/_conda/envs/mulled-v1-eb2018fd3ce0fcbcee48a4bf89c57219add691c16729281b6c46b30f08339397/bin' ; export PATH=$PATH:'/mnt/galaxy/tool_dependencies/_conda/envs/mulled-v1-eb2018fd3ce0fcbcee48a4bf89c57219add691c16729281b6c46b30f08339397/bin' ; python "/mnt/galaxy/tmp/job_working_directory/005/5445/set_metadata_j7Uzze.py" "/mnt/galaxy/tmp/job_working_directory/005/5445/registry.xml" "/mnt/galaxy/tmp/job_working_directory/005/5445/working/galaxy.json" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8881_Qdh9ER,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8881_qHz4Zv,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8881_T3RqHz,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8881_sOE4y3,/mnt/galaxy/files/008/dataset_8298.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8881_igBTZp" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8880_AX75ul,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8880_j0LTpu,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8880_o2pgng,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8880_3DVZOM,/mnt/galaxy/files/008/dataset_8297.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8880_lU6LG8" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8879_SKQta0,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8879_QXRpZ4,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8879_fdeT8W,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8879_zojckv,/mnt/galaxy/files/008/dataset_8296.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8879_Ye56et" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8878_FGT_WD,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8878_6xerYF,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8878_OnfVVM,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8878_P44Xax,/mnt/galaxy/files/008/dataset_8295.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8878_ejG_YR" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8877_YxJqA4,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8877_t9tzEb,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8877_CwKZ6F,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8877_soYTbc,/mnt/galaxy/files/008/dataset_8294.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8877_aOQMab" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8876_SKKNBK,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8876_rfXhFZ,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8876_6VcRaQ,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8876_5LSYqm,/mnt/galaxy/files/008/dataset_8293.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8876_7yzUJu" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8875_f2u_MT,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8875_sak87X,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8875_zd1d9U,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8875_eyErh5,/mnt/galaxy/files/008/dataset_8292.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8875_kDzgbm" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8874_bSygNM,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8874_XeBwbi,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8874_UmPQfK,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8874_nbWxGX,/mnt/galaxy/files/008/dataset_8291.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8874_WwfQ0b" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8873_U6Kh_L,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8873_4iFkEX,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8873_3UATYX,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8873_T9EfJJ,/mnt/galaxy/files/008/dataset_8290.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8873_NdEd_r" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8872_wAcLWv,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8872_tQl4Y_,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8872_AnyGTu,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8872__CbcZK,/mnt/galaxy/files/008/dataset_8289.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8872_bgGZSE" "/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_in_HistoryDatasetAssociation_8871_ezOOOB,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_kwds_HistoryDatasetAssociation_8871_BX5ZDC,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_out_HistoryDatasetAssociation_8871_YMgVPL,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_results_HistoryDatasetAssociation_8871_aCHepJ,/mnt/galaxy/files/008/dataset_8288.dat,/mnt/galaxy/tmp/job_working_directory/005/5445/metadata_override_HistoryDatasetAssociation_8871_koerWg" 5242880; sh -c "exit $return_code"
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:38:50,112 (5445) submitting file /mnt/galaxy/tmp/job_working_directory/005/5445/galaxy_5445.sh
galaxy.jobs.runners.drmaa INFO 2018-03-20 15:38:50,128 (5445) queued as 2
galaxy.jobs DEBUG 2018-03-20 15:38:50,128 (5445) Persisting job destination (destination id: slurm_cluster)
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:38:50,784 (5445/2) state change: job is running
94.125.130.125 - - [20/Mar/2018:15:38:51 +0000] "GET /api/tools?q=uni HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
127.0.0.1 - - [20/Mar/2018:15:38:51 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:38:51 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
94.125.130.125 - - [20/Mar/2018:15:38:51 +0000] "GET /api/tools?q=unic HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:52 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A38%3A48.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:52 +0000] "GET /api/tools?q=unicyclers HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:53 +0000] "GET /api/tools?q=unicycler HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fcrs4%2Fprokka%2Fprokka%2F1.12.0&version=1.12.0&__identifer=07rylp5vqru8" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:38:53,992 (5445/2) state change: job finished normally
galaxy.jobs.output_checker INFO 2018-03-20 15:38:54,027 Job 5445: Fatal error: Exit code 2 ()
galaxy.jobs.output_checker DEBUG 2018-03-20 15:38:54,027 Tool exit code indicates an error, failing job.
galaxy.jobs DEBUG 2018-03-20 15:38:54,063 (5445) setting dataset 8298 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,080 (5445) setting dataset 8297 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,097 (5445) setting dataset 8296 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,114 (5445) setting dataset 8295 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,131 (5445) setting dataset 8294 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,148 (5445) setting dataset 8293 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,174 (5445) setting dataset 8292 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,190 (5445) setting dataset 8291 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,207 (5445) setting dataset 8290 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,228 (5445) setting dataset 8289 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:38:54,246 (5445) setting dataset 8288 state to ERROR
galaxy.jobs INFO 2018-03-20 15:38:54,532 Collecting metrics for Job 5445
galaxy.jobs DEBUG 2018-03-20 15:38:54,552 job 5445 ended (finish() executed in (528.849 ms))
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,568 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:38:54,569 Bug report plugin generated response None
94.125.130.125 - - [20/Mar/2018:15:38:54 +0000] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build?version=0.4.4.0&__identifer=3k6ebveaip7&tool_version=0.4.4.0 HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:54 +0000] "GET /api/webhooks/tool-menu/all HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:55 +0000] "GET /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/citations HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:57 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A38%3A52.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:57 +0000] "GET /api/histories/be8c8ac3dbd1dd54?keys=size%2Cnon_ready_jobs%2Ccontents_active%2Chid_counter HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:57 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:38:57 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:01 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
127.0.0.1 - - [20/Mar/2018:15:39:02 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:39:02 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
galaxy.tools DEBUG 2018-03-20 15:39:02,894 Validated and populated state for tool request (21.190 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:02,937 Handled output named assembly_graph for tool toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0 (15.656 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:02,952 Handled output named assembly for tool toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0 (14.576 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:02,956 Added output datasets to history (4.291 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:02,993 Verified access to datasets for Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0] (26.264 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:02,994 Setup for job Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0] complete, ready to flush (37.718 ms)
galaxy.tools.actions INFO 2018-03-20 15:39:03,030 Flushed transaction for job Job[id=5446,tool_id=toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0] (35.456 ms)
galaxy.tools.execute DEBUG 2018-03-20 15:39:03,030 Tool [toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0] created job [5446] (117.119 ms)
galaxy.tools.execute DEBUG 2018-03-20 15:39:03,036 Executed 1 job(s) for tool toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0 request: (142.213 ms)
94.125.130.125 - - [20/Mar/2018:15:39:02 +0000] "POST /api/tools HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:03 +0000] "GET /api/webhooks/tool HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:03 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A38%3A57.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
galaxy.jobs DEBUG 2018-03-20 15:39:04,028 (5446) Working directory for job is: /mnt/galaxy/tmp/job_working_directory/005/5446
galaxy.jobs.handler DEBUG 2018-03-20 15:39:04,032 (5446) Dispatching to slurm runner
galaxy.jobs DEBUG 2018-03-20 15:39:04,060 (5446) Persisting job destination (destination id: slurm_cluster)
galaxy.jobs.runners DEBUG 2018-03-20 15:39:04,066 Job [5446] queued (33.376 ms)
galaxy.jobs.handler INFO 2018-03-20 15:39:04,076 (5446) Job dispatched
galaxy.tools.deps DEBUG 2018-03-20 15:39:04,413 Using dependency unicycler version 0.4.4 of type conda
galaxy.jobs.command_factory INFO 2018-03-20 15:39:04,433 Built script [/mnt/galaxy/tmp/job_working_directory/005/5446/tool_script.sh] for tool command [[ "$CONDA_DEFAULT_ENV" = "/mnt/galaxy/tool_dependencies/_conda/envs/__unicycler@0.4.4" ] ||
MAX_TRIES=3
COUNT=0
while [ $COUNT -lt $MAX_TRIES ]; do
. /mnt/galaxy/tool_dependencies/_conda/bin/activate '/mnt/galaxy/tool_dependencies/_conda/envs/__unicycler@0.4.4' > conda_activate.log 2>&1
if [ $? -eq 0 ];then
break
else
let COUNT=COUNT+1
if [ $COUNT -eq $MAX_TRIES ];then
echo "Failed to activate conda environment! Error was:"
cat conda_activate.log
exit 1
fi
sleep 10s
fi
done ; ln -s '/mnt/galaxy/files/006/dataset_6736.dat' fq1.fastq && ln -s '/mnt/galaxy/files/006/dataset_6733.dat' fq2.fastq && pilon=`pilon --jar_dir` && unicycler -t "${GALAXY_SLOTS:-4}" -o ./ --verbosity 3 --pilon_path $pilon -1 'fq1.fastq' -2 'fq2.fastq' --mode 'normal' --min_fasta_length '100' --linear_seqs '0' --min_kmer_frac '0.2' --max_kmer_frac '0.95' --kmer_count '10' --depth_filter '0.25' --start_gene_id '90.0' --start_gene_cov '95.0' --min_polish_size '1000' --min_component_size '1000' --min_dead_end_size '1000' --scores '3,-6,-5,-2' --no_miniasm]
galaxy.tools.deps DEBUG 2018-03-20 15:39:04,593 Using dependency samtools version None of type conda
galaxy.tools.deps DEBUG 2018-03-20 15:39:04,593 Using dependency bcftools version 1.5 of type conda
galaxy.jobs.runners DEBUG 2018-03-20 15:39:04,598 (5446) command is: rm -rf working; mkdir -p working; cd working; /mnt/galaxy/tmp/job_working_directory/005/5446/tool_script.sh; return_code=$?; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5446/working/assembly.fasta ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5446/working/assembly.fasta /mnt/galaxy/files/008/dataset_8300.dat ; fi; if [ -f /mnt/galaxy/tmp/job_working_directory/005/5446/working/assembly.gfa ] ; then cp /mnt/galaxy/tmp/job_working_directory/005/5446/working/assembly.gfa /mnt/galaxy/files/008/dataset_8299.dat ; fi; cd '/mnt/galaxy/tmp/job_working_directory/005/5446';
[ "$GALAXY_VIRTUAL_ENV" = "None" ] && GALAXY_VIRTUAL_ENV="$_GALAXY_VIRTUAL_ENV"; _galaxy_setup_environment True
export PATH=$PATH:'/mnt/galaxy/tool_dependencies/_conda/envs/mulled-v1-eb2018fd3ce0fcbcee48a4bf89c57219add691c16729281b6c46b30f08339397/bin' ; export PATH=$PATH:'/mnt/galaxy/tool_dependencies/_conda/envs/mulled-v1-eb2018fd3ce0fcbcee48a4bf89c57219add691c16729281b6c46b30f08339397/bin' ; python "/mnt/galaxy/tmp/job_working_directory/005/5446/set_metadata_HqZ5RF.py" "/mnt/galaxy/tmp/job_working_directory/005/5446/registry.xml" "/mnt/galaxy/tmp/job_working_directory/005/5446/working/galaxy.json" "/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_in_HistoryDatasetAssociation_8883_hatPS_,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_kwds_HistoryDatasetAssociation_8883_KPMEsf,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_out_HistoryDatasetAssociation_8883_cJcX9V,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_results_HistoryDatasetAssociation_8883_leSpdp,/mnt/galaxy/files/008/dataset_8300.dat,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_override_HistoryDatasetAssociation_8883_5w3nvo" "/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_in_HistoryDatasetAssociation_8882_NTiJ5R,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_kwds_HistoryDatasetAssociation_8882_P_RgLc,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_out_HistoryDatasetAssociation_8882_dBg81E,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_results_HistoryDatasetAssociation_8882_uJUria,/mnt/galaxy/files/008/dataset_8299.dat,/mnt/galaxy/tmp/job_working_directory/005/5446/metadata_override_HistoryDatasetAssociation_8882_m62vAl" 5242880; sh -c "exit $return_code"
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:39:04,618 (5446) submitting file /mnt/galaxy/tmp/job_working_directory/005/5446/galaxy_5446.sh
galaxy.jobs.runners.drmaa INFO 2018-03-20 15:39:04,620 (5446) queued as 3
galaxy.jobs DEBUG 2018-03-20 15:39:04,621 (5446) Persisting job destination (destination id: slurm_cluster)
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:39:05,026 (5446/3) state change: job is running
94.125.130.125 - - [20/Mar/2018:15:39:07 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A39%3A03.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:07 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:07 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:11 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A39%3A07.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:15 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A39%3A11.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
127.0.0.1 - - [20/Mar/2018:15:39:17 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:39:17 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
galaxy.jobs.runners.drmaa DEBUG 2018-03-20 15:39:19,534 (5446/3) state change: job finished normally
galaxy.jobs.output_checker INFO 2018-03-20 15:39:19,563 Job 5446: Fatal error: Exit code 1 ()
galaxy.jobs.output_checker DEBUG 2018-03-20 15:39:19,563 Tool exit code indicates an error, failing job.
galaxy.jobs DEBUG 2018-03-20 15:39:19,601 (5446) setting dataset 8300 state to ERROR
galaxy.jobs DEBUG 2018-03-20 15:39:19,636 (5446) setting dataset 8299 state to ERROR
galaxy.jobs INFO 2018-03-20 15:39:19,746 Collecting metrics for Job 5446
galaxy.jobs DEBUG 2018-03-20 15:39:19,758 job 5446 ended (finish() executed in (199.099 ms))
galaxy.tools.error_reports DEBUG 2018-03-20 15:39:19,772 Bug report plugin generated response None
galaxy.tools.error_reports DEBUG 2018-03-20 15:39:19,772 Bug report plugin generated response None
94.125.130.125 - - [20/Mar/2018:15:39:20 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents?order=hid&v=dev&q=update_time-ge&q=deleted&q=purged&qv=2018-03-20T15%3A39%3A16.000Z&qv=False&qv=False HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:20 +0000] "GET /api/histories/be8c8ac3dbd1dd54?keys=size%2Cnon_ready_jobs%2Ccontents_active%2Chid_counter HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:20 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:20 +0000] "POST /api/tools/toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0/build HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:21 +0000] "GET /api/histories/be8c8ac3dbd1dd54/contents/datasets/1d31523b887125fc HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:26 +0000] "GET /datasets/1d31523b887125fc/show_params HTTP/1.0" 200 - "http://52.54.147.188/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Funicycler%2Funicycler%2F0.4.4.0&version=0.4.4.0&__identifer=3k6ebveaip7" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:26 +0000] "GET /api/webhooks/onload/all HTTP/1.0" 200 - "http://52.54.147.188/datasets/1d31523b887125fc/show_params" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:30 +0000] "GET /datasets/1d31523b887125fc/stderr HTTP/1.0" 200 - "http://52.54.147.188/datasets/1d31523b887125fc/show_params" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
94.125.130.125 - - [20/Mar/2018:15:39:33 +0000] "GET /api/webhooks/onload/all HTTP/1.0" 200 - "http://52.54.147.188/datasets/1d31523b887125fc/show_params" "Mozilla/5.0 (Windows NT 6.1; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/64.0.3282.186 Safari/537.36"
127.0.0.1 - - [20/Mar/2018:15:39:33 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:39:33 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:39:44 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:39:44 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:00 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:00 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:11 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:11 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:26 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:26 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:42 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:42 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:58 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:40:58 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:09 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:09 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:25 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:25 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:41 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:41 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:56 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:41:56 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:12 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:12 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:28 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:28 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:44 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:44 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:59 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:42:59 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:43:35 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:43:35 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:44:11 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:44:11 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:44:46 +0000] "GET / HTTP/1.1" 302 - "-" "Python-urllib/2.7"
127.0.0.1 - - [20/Mar/2018:15:44:46 +0000] "GET /root/login?redirect=%2F HTTP/1.1" 200 - "-" "Python-urllib/2.7"
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